Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold4429

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 320

Length: 534
ACGTcount: A:0.36, C:0.12, G:0.16, T:0.37


Found at i:194 original size:25 final size:25

Alignment explanation


    Indices: 160--210  Score: 93
    Period size: 25  Copynumber: 2.0  Consensus size: 25

        150 TAATTAACAA

                                     
        160 AATAATAAAGATTCATAACAGGGTT
          1 AATAATAAAGATTCATAACAGGGTT

                              *      
        185 AATAATAAAGATTCATAATAGGGTT
          1 AATAATAAAGATTCATAACAGGGTT

             
        210 A
          1 A

        211 GTTGGTATAG


Statistics
Matches: 25,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  25   25  1.00

ACGTcount: A:0.49, C:0.06, G:0.16, T:0.29


Consensus pattern (25 bp):   
AATAATAAAGATTCATAACAGGGTT

Found at i:518 original size:17 final size:19

Alignment explanation


    Indices: 486--520  Score: 56
    Period size: 17  Copynumber: 1.9  Consensus size: 19

        476 GTCGATTAGG

                               
        486 TTAATTTAGATTTAATAAT
          1 TTAATTTAGATTTAATAAT

                              
        505 TTAA-TTAG-TTTAATAA
          1 TTAATTTAGATTTAATAA

        521 ATCTATTATT


Statistics
Matches: 16,  Mismatches: 0, Indels: 2
        0.89            0.00        0.11

Matches are distributed among these distances:
  17    8  0.50
  18    4  0.25
  19    4  0.25

ACGTcount: A:0.43, C:0.00, G:0.06, T:0.51


Consensus pattern (19 bp):   
TTAATTTAGATTTAATAAT
Done.