Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold2044

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 679

Length: 1133
ACGTcount: A:0.24, C:0.22, G:0.25, T:0.29


Found at i:235 original size:21 final size:21

Alignment explanation


    Indices: 211--257  Score: 60
    Period size: 21  Copynumber: 2.2  Consensus size: 21

        201 CTTTGTCCAG

                *                 
        211 CTTCTGGCGGCGG-TTGTGGTT
          1 CTTCCGGCGG-GGATTGTGGTT

                           *     
        232 CTTCCGGCGGGGATTTTGGTT
          1 CTTCCGGCGGGGATTGTGGTT

                 
        253 CTTCC
          1 CTTCC

        258 AGTAGGGCAT


Statistics
Matches: 23,  Mismatches: 2, Indels: 2
        0.85            0.07        0.07

Matches are distributed among these distances:
  20    2  0.09
  21   21  0.91

ACGTcount: A:0.02, C:0.23, G:0.36, T:0.38


Consensus pattern (21 bp):   
CTTCCGGCGGGGATTGTGGTT
Done.