Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: scaffold200
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 883113
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 55997 characters in sequence are not A, C, G, or T
File 3 of 3
Found at i:609131 original size:39 final size:41
Alignment explanation
Indices: 609045--609171 Score: 118
Period size: 39 Copynumber: 3.1 Consensus size: 41
609035 ATTTTTCCTG
* * *
609045 AAATCGCGTCCACGTCAGCGCGATGTCAGGGGACGTGTCAGC
1 AAATCGCGTCCACGTCAGCGCGAT-TCAGCGGACGTGGCAAC
* **
609087 AAATCGCGTCCACGTCAGTGCGATT-A-CTTACGTGGCAAC
1 AAATCGCGTCCACGTCAGCGCGATTCAGCGGACGTGGCAAC
* * * *
609126 AAATCGTGTCCACGTAAGCGCGATT-TGCTGACGTGG-AAGC
1 AAATCGCGTCCACGTCAGCGCGATTCAGCGGACGTGGCAA-C
609166 AAATCG
1 AAATCG
609172 TGCTTACGTG
Statistics
Matches: 72, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
39 32 0.44
40 16 0.22
41 1 0.01
42 23 0.32
ACGTcount: A:0.25, C:0.26, G:0.28, T:0.20
Consensus pattern (41 bp):
AAATCGCGTCCACGTCAGCGCGATTCAGCGGACGTGGCAAC
Found at i:620527 original size:21 final size:21
Alignment explanation
Indices: 620503--620558 Score: 76
Period size: 21 Copynumber: 2.7 Consensus size: 21
620493 AACAACAGTG
* *
620503 GCGGTGAGATTAGTTACTGTA
1 GCGGTGAGATTAGATACTATA
*
620524 GCGGTGAGATTGGATACTATA
1 GCGGTGAGATTAGATACTATA
*
620545 GGGGTGAGATTAGA
1 GCGGTGAGATTAGA
620559 AATAATGGTG
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.27, C:0.07, G:0.38, T:0.29
Consensus pattern (21 bp):
GCGGTGAGATTAGATACTATA
Found at i:620815 original size:17 final size:18
Alignment explanation
Indices: 620782--620815 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
620772 CTTATAAATA
*
620782 AAAATTATAATTCTATTG
1 AAAATTATAATTATATTG
620800 AAAATTA-AATTATATT
1 AAAATTATAATTATATT
620816 AAATAATGAC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.50, C:0.03, G:0.03, T:0.44
Consensus pattern (18 bp):
AAAATTATAATTATATTG
Found at i:624417 original size:31 final size:31
Alignment explanation
Indices: 624382--624482 Score: 125
Period size: 31 Copynumber: 3.3 Consensus size: 31
624372 AATTTAGGTT
* *
624382 TTGAATTTGACAATTGTTTCCACATTGGTAC
1 TTGAACTTGACAATTGTTTCCACATTGGTGC
*
624413 TTGAACTTGACAACT-TTTCTCACATTAGG-GC
1 TTGAACTTGACAATTGTTTC-CACATT-GGTGC
* *
624444 CTAAACTTGACAATTGTTTCCACATTGGTGC
1 TTGAACTTGACAATTGTTTCCACATTGGTGC
624475 TTGAACTT
1 TTGAACTT
624483 TTGGGTTTTC
Statistics
Matches: 58, Mismatches: 8, Indels: 8
0.78 0.11 0.11
Matches are distributed among these distances:
30 6 0.10
31 46 0.79
32 6 0.10
ACGTcount: A:0.26, C:0.20, G:0.16, T:0.39
Consensus pattern (31 bp):
TTGAACTTGACAATTGTTTCCACATTGGTGC
Found at i:625027 original size:19 final size:19
Alignment explanation
Indices: 624999--625070 Score: 103
Period size: 19 Copynumber: 3.9 Consensus size: 19
624989 AGTATTACTT
624999 AATA-ATTTATTAAATTAA
1 AATAGATTTATTAAATTAA
* *
625017 AATAGATTTATTAAATGAG
1 AATAGATTTATTAAATTAA
625036 AATAG-TTTATTAAATTAA
1 AATAGATTTATTAAATTAA
*
625054 AATAGAGTTATTAAATT
1 AATAGATTTATTAAATT
625071 TTTTTTTTTT
Statistics
Matches: 47, Mismatches: 5, Indels: 3
0.85 0.09 0.05
Matches are distributed among these distances:
18 20 0.43
19 27 0.57
ACGTcount: A:0.50, C:0.00, G:0.08, T:0.42
Consensus pattern (19 bp):
AATAGATTTATTAAATTAA
Found at i:625046 original size:37 final size:37
Alignment explanation
Indices: 624999--625069 Score: 124
Period size: 37 Copynumber: 1.9 Consensus size: 37
624989 AGTATTACTT
*
624999 AATAATTTATTAAATTAAAATAGATTTATTAAATGAG
1 AATAATTTATTAAATTAAAATAGAGTTATTAAATGAG
*
625036 AATAGTTTATTAAATTAAAATAGAGTTATTAAAT
1 AATAATTTATTAAATTAAAATAGAGTTATTAAAT
625070 TTTTTTTTTT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 32 1.00
ACGTcount: A:0.51, C:0.00, G:0.08, T:0.41
Consensus pattern (37 bp):
AATAATTTATTAAATTAAAATAGAGTTATTAAATGAG
Found at i:625170 original size:29 final size:27
Alignment explanation
Indices: 625095--625191 Score: 151
Period size: 27 Copynumber: 3.5 Consensus size: 27
625085 TTTTTTTTAT
625095 ATATTTTGGTAAATAAAAAAAGTT-TA
1 ATATTTTGGTAAATAAAAAAAGTTGTA
625121 TATATTTTGGTAAATAAAAAAAGTTGTA
1 -ATATTTTGGTAAATAAAAAAAGTTGTA
625149 ATATTTTGGTAAATAAAAAAAAAGTTGTA
1 ATATTTTGGTAAAT--AAAAAAAGTTGTA
*
625178 ATATTTTAGTAAAT
1 ATATTTTGGTAAAT
625192 TTTTATTTTT
Statistics
Matches: 66, Mismatches: 1, Indels: 4
0.93 0.01 0.06
Matches are distributed among these distances:
27 38 0.58
28 2 0.03
29 26 0.39
ACGTcount: A:0.48, C:0.00, G:0.12, T:0.39
Consensus pattern (27 bp):
ATATTTTGGTAAATAAAAAAAGTTGTA
Found at i:629027 original size:40 final size:40
Alignment explanation
Indices: 628947--629075 Score: 145
Period size: 40 Copynumber: 3.2 Consensus size: 40
628937 AAACAAGCTT
* * * *
628947 TTAGCGGCGTTTTGACAAAAAACGCCACTAAAAATCGAGCA
1 TTAGCGGCGCTTT-ACATAAAACGCCGCTAAAAATTGAGCA
* * *
628988 TTAGCGGCGCTTTACGTAAAATGCCGCTAAAGATTGAGCA
1 TTAGCGGCGCTTTACATAAAACGCCGCTAAAAATTGAGCA
* *
629028 TTAGCGGCGCTTT-CCTGGAAACGCCGCTAAAAATT-AGCA
1 TTAGCGGCGCTTTACAT-AAAACGCCGCTAAAAATTGAGCA
629067 TTAGCGGCG
1 TTAGCGGCG
629076 TTTTTTGGAA
Statistics
Matches: 76, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
39 15 0.20
40 49 0.64
41 12 0.16
ACGTcount: A:0.31, C:0.22, G:0.24, T:0.22
Consensus pattern (40 bp):
TTAGCGGCGCTTTACATAAAACGCCGCTAAAAATTGAGCA
Found at i:629099 original size:39 final size:41
Alignment explanation
Indices: 628947--629099 Score: 138
Period size: 40 Copynumber: 3.8 Consensus size: 41
628937 AAACAAGCTT
** * * *
628947 TTAGCGGCGTTTTGA-CAAAAAACGCCACTAAAAATCGAGCA
1 TTAGCGGCGTTTT-ATGGAAAATCGCCGCTAAAAATTGAGCA
* * * *
628988 TTAGCGGCGCTTTACGTAAAAT-GCCGCTAAAGATTGAGCA
1 TTAGCGGCGTTTTATGGAAAATCGCCGCTAAAAATTGAGCA
**
629028 TTAGCGGCGCTTTCCTGG-AAA-CGCCGCTAAAAATT-AGCA
1 TTAGCGGCG-TTTTATGGAAAATCGCCGCTAAAAATTGAGCA
*
629067 TTAGCGGCGTTTTTTGGAAAATCGCCGC-AAAAA
1 TTAGCGGCGTTTTATGGAAAATCGCCGCTAAAAA
629100 GTCTAAGCAA
Statistics
Matches: 92, Mismatches: 15, Indels: 12
0.77 0.13 0.10
Matches are distributed among these distances:
38 6 0.07
39 21 0.23
40 46 0.50
41 19 0.21
ACGTcount: A:0.32, C:0.22, G:0.23, T:0.24
Consensus pattern (41 bp):
TTAGCGGCGTTTTATGGAAAATCGCCGCTAAAAATTGAGCA
Found at i:629117 original size:25 final size:25
Alignment explanation
Indices: 629084--629153 Score: 131
Period size: 25 Copynumber: 2.8 Consensus size: 25
629074 CGTTTTTTGG
*
629084 AAAATCGCCGCAAAAAGTCTAAGCA
1 AAAAACGCCGCAAAAAGTCTAAGCA
629109 AAAAACGCCGCAAAAAGTCTAAGCA
1 AAAAACGCCGCAAAAAGTCTAAGCA
629134 AAAAACGCCGCAAAAAGTCT
1 AAAAACGCCGCAAAAAGTCT
629154 TTAGCCCAAC
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
25 44 1.00
ACGTcount: A:0.50, C:0.24, G:0.16, T:0.10
Consensus pattern (25 bp):
AAAAACGCCGCAAAAAGTCTAAGCA
Found at i:629450 original size:41 final size:41
Alignment explanation
Indices: 629172--629449 Score: 452
Period size: 41 Copynumber: 6.8 Consensus size: 41
629162 ACGACATCGT
* *
629172 TCAGATCTTTAGCGGCGTTTTTAAAAAAAGCGACGCTAATGC
1 TCAGATCTTTAGCGGCGTTTTT-GAGAAAGCGACGCTAATGC
629214 TCAGATCTTTAGCGGCGTTTTTGAGAAAGCGACGCTAATGC
1 TCAGATCTTTAGCGGCGTTTTTGAGAAAGCGACGCTAATGC
*
629255 TCAGATCTTTAGCGGCGTTTTTGAGAAAGCGACGTTAATGC
1 TCAGATCTTTAGCGGCGTTTTTGAGAAAGCGACGCTAATGC
*
629296 TCAGATCTTTAGCAGCGTTTTTGAGAAAGCG-CTGCTAATGC
1 TCAGATCTTTAGCGGCGTTTTTGAGAAAGCGAC-GCTAATGC
629337 TCAGATCTTTAGCGGCGTTTTTGAGAAAGCGACGCTAATGC
1 TCAGATCTTTAGCGGCGTTTTTGAGAAAGCGACGCTAATGC
*
629378 TCAGATCTTTAGCGGCGTTTTTGAGAAAGCG-CAGTTAATGC
1 TCAGATCTTTAGCGGCGTTTTTGAGAAAGCGAC-GCTAATGC
* *
629419 ACAGATCTTTAGCGGCGTTTTTGAAAAAGCG
1 TCAGATCTTTAGCGGCGTTTTTGAGAAAGCG
629450 CCGCAAAAAC
Statistics
Matches: 224, Mismatches: 9, Indels: 7
0.93 0.04 0.03
Matches are distributed among these distances:
40 2 0.01
41 199 0.89
42 23 0.10
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.30
Consensus pattern (41 bp):
TCAGATCTTTAGCGGCGTTTTTGAGAAAGCGACGCTAATGC
Found at i:629790 original size:14 final size:14
Alignment explanation
Indices: 629760--629824 Score: 58
Period size: 14 Copynumber: 4.6 Consensus size: 14
629750 GGGTTGTGAT
* *
629760 TTAAGGTTTATGGG
1 TTAAGGGTTAGGGG
*
629774 TTAGGGGTTAGGGG
1 TTAAGGGTTAGGGG
* *
629788 TTAAGGGTTAGAGA
1 TTAAGGGTTAGGGG
* *
629802 TTAAGAGTTAGGGA
1 TTAAGGGTTAGGGG
*
629816 TTTAGGGTT
1 TTAAGGGTT
629825 TATAGATTCA
Statistics
Matches: 41, Mismatches: 10, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
14 41 1.00
ACGTcount: A:0.25, C:0.00, G:0.40, T:0.35
Consensus pattern (14 bp):
TTAAGGGTTAGGGG
Found at i:629841 original size:29 final size:28
Alignment explanation
Indices: 629780--629842 Score: 72
Period size: 29 Copynumber: 2.2 Consensus size: 28
629770 TGGGTTAGGG
*
629780 GTTAGGGGTTAAGGGTTAGAGATTAAGA
1 GTTAGGGATTAAGGGTTAGAGATTAAGA
* * * *
629808 GTTAGGGATTTAGGGTTTATAGATTCAGT
1 GTTAGGGATTAAGGG-TTAGAGATTAAGA
629837 GTTAGG
1 GTTAGG
629843 TTAGGGTTTA
Statistics
Matches: 29, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
28 13 0.45
29 16 0.55
ACGTcount: A:0.27, C:0.02, G:0.37, T:0.35
Consensus pattern (28 bp):
GTTAGGGATTAAGGGTTAGAGATTAAGA
Found at i:629967 original size:95 final size:95
Alignment explanation
Indices: 629841--630017 Score: 266
Period size: 95 Copynumber: 1.9 Consensus size: 95
629831 TTCAGTGTTA
** * *
629841 GGTTAGGGTTTAGGGTTTAGATTAATTAGTGTGTTTTAATTTATATATTAAATAATGTTTAGGGG
1 GGTTAGGGTTTAGAATTTAGATTAATTAGTGTGTTTTAATTTATATATTAAATAAGGTTTAGAGG
629906 TTA-TGGGTTAGGGGTTAGGGATTTGGGGTG
66 TTAGT-GGTTAGGGGTTAGGGATTTGGGGTG
* * *
629936 GGTTAGGGTTTATAATTTAGATTAATTAGTGTTTTTTAATTTCTATATTAAATAAGGTTTAGAGG
1 GGTTAGGGTTTAGAATTTAGATTAATTAGTGTGTTTTAATTTATATATTAAATAAGGTTTAGAGG
*
630001 TTAGTGGTTTGGGGTTA
66 TTAGTGGTTAGGGGTTA
630018 AGAGTTAGTG
Statistics
Matches: 73, Mismatches: 8, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
95 72 0.99
96 1 0.01
ACGTcount: A:0.25, C:0.01, G:0.29, T:0.45
Consensus pattern (95 bp):
GGTTAGGGTTTAGAATTTAGATTAATTAGTGTGTTTTAATTTATATATTAAATAAGGTTTAGAGG
TTAGTGGTTAGGGGTTAGGGATTTGGGGTG
Found at i:630016 original size:22 final size:22
Alignment explanation
Indices: 629991--630042 Score: 70
Period size: 21 Copynumber: 2.4 Consensus size: 22
629981 TATTAAATAA
* *
629991 GGTTTAGAGGTTAGTGGTTTGG
1 GGTTTAGAGGTTAGTGATTTAG
*
630013 GGTTAAGA-GTTAGTGATTTAG
1 GGTTTAGAGGTTAGTGATTTAG
630034 GGTTTAGAG
1 GGTTTAGAG
630043 ATTTGGGGTC
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
21 18 0.72
22 7 0.28
ACGTcount: A:0.21, C:0.00, G:0.40, T:0.38
Consensus pattern (22 bp):
GGTTTAGAGGTTAGTGATTTAG
Found at i:631835 original size:23 final size:21
Alignment explanation
Indices: 631793--631836 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 21
631783 CCCTTCCCTC
*
631793 CAAAACCCAAATTCCTTCAAA
1 CAAAACCCAAACTCCTTCAAA
631814 CAAAACCCAAACCCTCCTTCAAA
1 CAAAACCCAAA--CTCCTTCAAA
631837 TTATGCTCAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
21 11 0.55
23 9 0.45
ACGTcount: A:0.45, C:0.39, G:0.00, T:0.16
Consensus pattern (21 bp):
CAAAACCCAAACTCCTTCAAA
Found at i:632755 original size:43 final size:43
Alignment explanation
Indices: 632707--633059 Score: 439
Period size: 43 Copynumber: 8.3 Consensus size: 43
632697 TATATGTTTT
*
632707 TAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGATCTTGAGCTA
1 TAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGATCTTGATCTA
* * *
632750 TAGCGGCGTTTGTGGAAAAAGCGCCGCTAAA-AGTCATGACCTA
1 TAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGA-TCTTGATCTA
*
632793 TAGCGGCGTTTGTGGGAAAAGCGCCGCTAAA-AGTCATGATCTA
1 TAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGA-TCTTGATCTA
* *
632836 TAGCGGCGTTTGTGGGATAAGCGCCGCTAAAGGT-TCTGATCTA
1 TAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGATCT-TGATCTA
* **
632879 TAGCGGCGTTTGTGGGAAAAGCGCCGCTAAATATCTTGAGATA
1 TAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGATCTTGATCTA
* * *
632922 TAGCGGCGTTTGT-GTAAAAGAGCCGCTAAAGGTCTTGATCTA
1 TAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGATCTTGATCTA
* * **
632964 TAGCGGCGTTTGT-GTAAAAGCGCCGCTAAAGGTCCAGATCTA
1 TAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGATCTTGATCTA
* * *
633006 TAGCGGAGTTTGTGGGAAAAGCGCGGCTAAATG-TCATGATCTA
1 TAGCGGCGTTTGTGGGAAAAGCGCCGCTAAA-GATCTTGATCTA
*
633049 TAGCAGCGTTT
1 TAGCGGCGTTT
633060 ATTTCTAAAA
Statistics
Matches: 275, Mismatches: 29, Indels: 12
0.87 0.09 0.04
Matches are distributed among these distances:
42 75 0.27
43 198 0.72
44 2 0.01
ACGTcount: A:0.26, C:0.18, G:0.30, T:0.25
Consensus pattern (43 bp):
TAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGATCTTGATCTA
Found at i:633389 original size:19 final size:19
Alignment explanation
Indices: 633367--633406 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
633357 TTTAATTGTC
*
633367 AAAA-TACATTTGAATAACA
1 AAAACTACATTT-AAGAACA
633386 AAAACTACATTTAAGAACA
1 AAAACTACATTTAAGAACA
633405 AA
1 AA
633407 GTTAGACAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 12 0.63
20 7 0.37
ACGTcount: A:0.60, C:0.12, G:0.05, T:0.23
Consensus pattern (19 bp):
AAAACTACATTTAAGAACA
Found at i:637387 original size:30 final size:31
Alignment explanation
Indices: 637351--637413 Score: 119
Period size: 31 Copynumber: 2.1 Consensus size: 31
637341 TTTCATATAA
637351 TTAACATCCATC-AAAAAAAAAATTAAGGTT
1 TTAACATCCATCAAAAAAAAAAATTAAGGTT
637381 TTAACATCCATCAAAAAAAAAAATTAAGGTT
1 TTAACATCCATCAAAAAAAAAAATTAAGGTT
637412 TT
1 TT
637414 CTTTTTCGGT
Statistics
Matches: 32, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
30 12 0.38
31 20 0.62
ACGTcount: A:0.52, C:0.13, G:0.06, T:0.29
Consensus pattern (31 bp):
TTAACATCCATCAAAAAAAAAAATTAAGGTT
Found at i:649407 original size:17 final size:17
Alignment explanation
Indices: 649385--649421 Score: 74
Period size: 17 Copynumber: 2.2 Consensus size: 17
649375 ATTCATAAAG
649385 TATGTAAAATTGAATGA
1 TATGTAAAATTGAATGA
649402 TATGTAAAATTGAATGA
1 TATGTAAAATTGAATGA
649419 TAT
1 TAT
649422 TGATAGATAC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.46, C:0.00, G:0.16, T:0.38
Consensus pattern (17 bp):
TATGTAAAATTGAATGA
Found at i:650936 original size:87 final size:87
Alignment explanation
Indices: 650790--650976 Score: 259
Period size: 87 Copynumber: 2.1 Consensus size: 87
650780 GACCCAGAGT
*
650790 GAAACACGTGTCCAATGGGCCTAAAGCCCGCTTAGAATGTCAGTCCCAAGTATAGAGAGGACCAC
1 GAAACACGTGTCCAATGGGCCTAAAGCCCGCTTAGAATGTCAGCCCCAAGTATAGAGAGGACCAC
650855 GTACACTACAGGCGACCAAGGC
66 GTACACTACAGGCGACCAAGGC
* * * *
650877 GAAACATGTGTCCAGTGGGCCTAAAGCCCG-TTCAGAATGTCAGCCCCAGGTATAGAGAGGACTA
1 GAAACACGTGTCCAATGGGCCTAAAGCCCGCTT-AGAATGTCAGCCCCAAGTATAGAGAGGACCA
* * * *
650941 TGTACACTATAGGCAACCCAGGAC
65 CGTACACTACAGGCGACCAAGG-C
*
650965 AAAACACGTGTC
1 GAAACACGTGTC
650977 TAGCAGGCCT
Statistics
Matches: 87, Mismatches: 11, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
86 2 0.02
87 74 0.85
88 11 0.13
ACGTcount: A:0.32, C:0.26, G:0.25, T:0.17
Consensus pattern (87 bp):
GAAACACGTGTCCAATGGGCCTAAAGCCCGCTTAGAATGTCAGCCCCAAGTATAGAGAGGACCAC
GTACACTACAGGCGACCAAGGC
Found at i:652918 original size:21 final size:21
Alignment explanation
Indices: 652892--652943 Score: 86
Period size: 21 Copynumber: 2.5 Consensus size: 21
652882 TTATTATTAA
652892 GTCTCGAGACAACATGAACAT
1 GTCTCGAGACAACATGAACAT
*
652913 GTCTCGAGACAACATTAACAT
1 GTCTCGAGACAACATGAACAT
*
652934 GTCTCAAGAC
1 GTCTCGAGAC
652944 CACAAGAATG
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.37, C:0.25, G:0.17, T:0.21
Consensus pattern (21 bp):
GTCTCGAGACAACATGAACAT
Found at i:653608 original size:6 final size:6
Alignment explanation
Indices: 653597--653621 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
653587 TTAATAAAAA
653597 ATAATT ATAATT ATAATT ATAATT A
1 ATAATT ATAATT ATAATT ATAATT A
653622 ATATGTTTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (6 bp):
ATAATT
Found at i:655749 original size:18 final size:18
Alignment explanation
Indices: 655726--655840 Score: 87
Period size: 17 Copynumber: 6.4 Consensus size: 18
655716 TTTACCAAAA
*
655726 AAAGAAAGGAGATGAAAG
1 AAAGAAAGGAGAAGAAAG
*
655744 AAAGAAA-AAGAAGGAAAG
1 AAAGAAAGGAGAA-GAAAG
655762 AAAAGGAAAGGAGAAGAGAA-
1 -AAA-GAAAGGAGAAGA-AAG
*
655782 AAAAAAAGGAAGAAG-AAG
1 AAAGAAAGG-AGAAGAAAG
*
655800 -AGGAAAGGAGAAGAAA-
1 AAAGAAAGGAGAAGAAAG
* * *
655816 AAAGAAAGAAAAAGAAGG
1 AAAGAAAGGAGAAGAAAG
655834 AAAGAAA
1 AAAGAAA
655841 AGGAAAGGAG
Statistics
Matches: 77, Mismatches: 10, Indels: 20
0.72 0.09 0.19
Matches are distributed among these distances:
16 5 0.06
17 25 0.32
18 24 0.31
19 11 0.14
20 6 0.08
21 6 0.08
ACGTcount: A:0.69, C:0.00, G:0.30, T:0.01
Consensus pattern (18 bp):
AAAGAAAGGAGAAGAAAG
Found at i:655753 original size:10 final size:10
Alignment explanation
Indices: 655740--655836 Score: 52
Period size: 10 Copynumber: 9.1 Consensus size: 10
655730 AAAGGAGATG
655740 AAAGAAAGAA
1 AAAGAAAGAA
*
655750 AAAGAAGGAA
1 AAAGAAAGAA
*
655760 AGAA-AAGGAA
1 A-AAGAAAGAA
*
655770 AGGAGAAGAGAA
1 A-AAGAA-AGAA
*
655782 AAAAAAAGGAA
1 AAAGAAA-GAA
* *
655793 GAAGAAGAGGA
1 AAAGAA-AGAA
*
655804 AAGGAGAAGAAA
1 AAAGA-AAG-AA
655816 AAAGAAAGAA
1 AAAGAAAGAA
*
655826 AAAGAAGGAA
1 AAAGAAAGAA
655836 A
1 A
655837 GAAAAGGAAA
Statistics
Matches: 67, Mismatches: 13, Indels: 14
0.71 0.14 0.15
Matches are distributed among these distances:
10 32 0.48
11 24 0.36
12 11 0.16
ACGTcount: A:0.70, C:0.00, G:0.30, T:0.00
Consensus pattern (10 bp):
AAAGAAAGAA
Found at i:655785 original size:33 final size:31
Alignment explanation
Indices: 655748--655837 Score: 101
Period size: 33 Copynumber: 2.8 Consensus size: 31
655738 TGAAAGAAAG
655748 AAAAAGAAGGAAAGAAAAGGAAAGGAGAAGAGA
1 AAAAAGAAGGAAAGAAAAGGAAAGGAG-A-AGA
* *
655781 AAAAAAAAGGAAGAAGAAGAGGAAAGGAGAAGA
1 AAAAAGAAGG-A-AAGAAAAGGAAAGGAGAAGA
*
655814 AAAAAGAAAGAAA-AAGAAGGAAAG
1 AAAAAGAAGGAAAGAA-AAGGAAAG
655838 AAAAGGAAAG
Statistics
Matches: 49, Mismatches: 5, Indels: 8
0.79 0.08 0.13
Matches are distributed among these distances:
30 2 0.04
31 9 0.18
32 1 0.02
33 20 0.41
34 2 0.04
35 15 0.31
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (31 bp):
AAAAAGAAGGAAAGAAAAGGAAAGGAGAAGA
Found at i:655817 original size:30 final size:30
Alignment explanation
Indices: 655777--655877 Score: 91
Period size: 30 Copynumber: 3.4 Consensus size: 30
655767 GAAAGGAGAA
*
655777 GAGAAAAAAAAAGGAAGAAGAAGAGGAAAG
1 GAGAAGAAAAAAGGAAGAAGAAGAGGAAAG
* *
655807 GAGAAGAAAAAAGAAAGAAAAAGAAGGAAA-
1 GAGAAGAAAAAAGGAAGAAGAAG-AGGAAAG
* * * *
655837 GAAAAG-GAAAGGAGAAGAAGAAGAGGGAAG
1 GAGAAGAAAAAAG-GAAGAAGAAGAGGAAAG
*
655867 GA-AGGAAAAAA
1 GAGAAGAAAAAA
655878 AAAGAAAAAA
Statistics
Matches: 55, Mismatches: 12, Indels: 8
0.73 0.16 0.11
Matches are distributed among these distances:
29 11 0.20
30 38 0.69
31 6 0.11
ACGTcount: A:0.66, C:0.00, G:0.34, T:0.00
Consensus pattern (30 bp):
GAGAAGAAAAAAGGAAGAAGAAGAGGAAAG
Found at i:655840 original size:58 final size:58
Alignment explanation
Indices: 655758--655891 Score: 153
Period size: 60 Copynumber: 2.2 Consensus size: 58
655748 AAAAAGAAGG
* *
655758 AAAGAAAAGGAAAGGAGAAGAGAAAAAAAAAG-GAAGAAGAAGAGGAAAGGAGAAGAAAAAA
1 AAAGAAAA-AAAAGGA-AAGA-AAAGAAAAAGAGAAGAAGAAGAGGAAAGGA-AAGAAAAAA
* * * * *
655819 GAAAGAAAAAGAAGGAAAGAAAAGGAAAGGAGAAGAAGAAGAGGGAAGGAAGGAAAAAA
1 -AAAGAAAAAAAAGGAAAGAAAAGAAAAAGAGAAGAAGAAGAGGAAAGGAAAGAAAAAA
655878 AAAGAAAAAAAAGG
1 AAAGAAAAAAAAGG
655892 TAAATTTTTT
Statistics
Matches: 63, Mismatches: 8, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
58 13 0.21
59 15 0.24
60 22 0.35
61 5 0.08
62 8 0.13
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (58 bp):
AAAGAAAAAAAAGGAAAGAAAAGAAAAAGAGAAGAAGAAGAGGAAAGGAAAGAAAAAA
Found at i:656644 original size:27 final size:27
Alignment explanation
Indices: 656614--656669 Score: 85
Period size: 27 Copynumber: 2.1 Consensus size: 27
656604 AAAGAGGGTG
* *
656614 ATGGAGGGGAATAAAAAAGCGGCACCA
1 ATGGAGAGGAATAAAAAAGCGACACCA
*
656641 ATGGAGAGGAATAAAAAGGCGACACCA
1 ATGGAGAGGAATAAAAAAGCGACACCA
656668 AT
1 AT
656670 ATGTGGCTAA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.46, C:0.14, G:0.30, T:0.09
Consensus pattern (27 bp):
ATGGAGAGGAATAAAAAAGCGACACCA
Found at i:659258 original size:25 final size:25
Alignment explanation
Indices: 659224--659273 Score: 91
Period size: 25 Copynumber: 2.0 Consensus size: 25
659214 TTTAATGCAC
*
659224 TTTTTGTATAAATTTAATATTTCTA
1 TTTTTATATAAATTTAATATTTCTA
659249 TTTTTATATAAATTTAATATTTCTA
1 TTTTTATATAAATTTAATATTTCTA
659274 ATTTAATTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.34, C:0.04, G:0.02, T:0.60
Consensus pattern (25 bp):
TTTTTATATAAATTTAATATTTCTA
Found at i:662318 original size:3 final size:3
Alignment explanation
Indices: 662310--662345 Score: 63
Period size: 3 Copynumber: 12.0 Consensus size: 3
662300 CATCTTAAAC
*
662310 CAA CAA CAA CAA CAG CAA CAA CAA CAA CAA CAA CAA
1 CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA
662346 TAATAATAAT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.64, C:0.33, G:0.03, T:0.00
Consensus pattern (3 bp):
CAA
Found at i:667018 original size:9 final size:9
Alignment explanation
Indices: 667001--667038 Score: 60
Period size: 9 Copynumber: 4.3 Consensus size: 9
666991 CAATTAAAAA
667001 AATT-GAAT
1 AATTCGAAT
*
667009 AATTCAAAT
1 AATTCGAAT
667018 AATTCGAAT
1 AATTCGAAT
667027 AATTCGAAT
1 AATTCGAAT
667036 AAT
1 AAT
667039 AAATTTGTGT
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
8 4 0.15
9 23 0.85
ACGTcount: A:0.50, C:0.08, G:0.08, T:0.34
Consensus pattern (9 bp):
AATTCGAAT
Found at i:667138 original size:19 final size:19
Alignment explanation
Indices: 667116--667187 Score: 74
Period size: 20 Copynumber: 3.7 Consensus size: 19
667106 AAAAATACAA
*
667116 AAAAATTTAAAATAATTTT
1 AAAAATTCAAAATAATTTT
*
667135 AAAAAATTCAAAATACTTTT
1 -AAAAATTCAAAATAATTTT
*
667155 TAAAATTCAAAAT-ATTTAT
1 AAAAATTCAAAATAATTT-T
*
667174 ATAAATTCTAAAAT
1 AAAAATTC-AAAAT
667188 TTTATATTTT
Statistics
Matches: 44, Mismatches: 6, Indels: 4
0.81 0.11 0.07
Matches are distributed among these distances:
18 3 0.07
19 19 0.43
20 22 0.50
ACGTcount: A:0.56, C:0.06, G:0.00, T:0.39
Consensus pattern (19 bp):
AAAAATTCAAAATAATTTT
Found at i:667178 original size:20 final size:19
Alignment explanation
Indices: 667117--667193 Score: 79
Period size: 19 Copynumber: 4.1 Consensus size: 19
667107 AAAATACAAA
* *
667117 AAAATTTAAAATAATTTTAA
1 AAAATTCAAAAT-ATTTTAT
667137 AAAATTCAAAATACTTTT-T
1 AAAATTCAAAATA-TTTTAT
667156 AAAATTCAAAATA-TTTAT
1 AAAATTCAAAATATTTTAT
*
667174 ATAAATTCTAAA-ATTTTAT
1 A-AAATTCAAAATATTTTAT
667193 A
1 A
667194 TTTTTAAAAA
Statistics
Matches: 50, Mismatches: 3, Indels: 9
0.81 0.05 0.15
Matches are distributed among these distances:
17 3 0.06
18 3 0.06
19 29 0.58
20 15 0.30
ACGTcount: A:0.53, C:0.05, G:0.00, T:0.42
Consensus pattern (19 bp):
AAAATTCAAAATATTTTAT
Found at i:667545 original size:15 final size:15
Alignment explanation
Indices: 667527--667556 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
667517 ATGTTTTCAC
*
667527 TCGATTCAATTCGAT
1 TCGACTCAATTCGAT
667542 TCGACTCAATTCGAT
1 TCGACTCAATTCGAT
667557 CGAACAATCA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.27, C:0.23, G:0.13, T:0.37
Consensus pattern (15 bp):
TCGACTCAATTCGAT
Found at i:668672 original size:9 final size:9
Alignment explanation
Indices: 668650--668685 Score: 54
Period size: 9 Copynumber: 3.8 Consensus size: 9
668640 GGATAAAACA
668650 AATAATTAGTT
1 AATAA-TAG-T
668661 AATAATAGT
1 AATAATAGT
668670 AATAATAGT
1 AATAATAGT
668679 AATAATA
1 AATAATA
668686 ATTAAATTAA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
9 17 0.68
10 3 0.12
11 5 0.20
ACGTcount: A:0.56, C:0.00, G:0.08, T:0.36
Consensus pattern (9 bp):
AATAATAGT
Found at i:671513 original size:25 final size:24
Alignment explanation
Indices: 671476--671664 Score: 100
Period size: 25 Copynumber: 7.6 Consensus size: 24
671466 TCCTGTACAT
671476 GTATGCTCATACGAGCTCTGAATCG
1 GTATGCTCATACGAGCTCT-AATCG
* *
671501 GTATGCTCTTACGAGCTGTAATCG
1 GTATGCTCATACGAGCTCTAATCG
* * *
671525 GTAAGCTCATACAAGCTGAGTAAT-G
1 GTATGCTCATACGAGCT--CTAATCG
* * *
671550 GTAAGCTCATGCGAGCT-GAATAACG
1 GTATGCTCATACGAGCTCTAAT--CG
* *
671575 GTAAGCTCATACGAGCT-GAATGACG
1 GTATGCTCATACGAGCTCTAAT--CG
* * *
671600 GTAAGCTCATACAAGCT-GAATGACG
1 GTATGCTCATACGAGCTCTAAT--CG
* *
671625 GTAAGCTCATACGAGCT-AAATGACG
1 GTATGCTCATACGAGCTCTAAT--CG
*
671650 GTAAGCTCATACGAG
1 GTATGCTCATACGAG
671665 GTGAAATTGG
Statistics
Matches: 146, Mismatches: 13, Indels: 10
0.86 0.08 0.06
Matches are distributed among these distances:
22 3 0.02
24 19 0.13
25 119 0.82
26 5 0.03
ACGTcount: A:0.31, C:0.20, G:0.25, T:0.23
Consensus pattern (24 bp):
GTATGCTCATACGAGCTCTAATCG
Found at i:671586 original size:50 final size:50
Alignment explanation
Indices: 671480--671669 Score: 226
Period size: 50 Copynumber: 3.8 Consensus size: 50
671470 GTACATGTAT
* *
671480 GCTCATACGAGCTCTGAAT--CGGTATGCTCTTACGAGCTG--TAATCGGTAA
1 GCTCATACGAG--CTGAATGACGGTAAGCTCATACGAGCTGAATAA-CGGTAA
* * * * *
671529 GCTCATACAAGCTGAGTAATGGTAAGCTCATGCGAGCTGAATAACGGTAA
1 GCTCATACGAGCTGAATGACGGTAAGCTCATACGAGCTGAATAACGGTAA
* *
671579 GCTCATACGAGCTGAATGACGGTAAGCTCATACAAGCTGAATGACGGTAA
1 GCTCATACGAGCTGAATGACGGTAAGCTCATACGAGCTGAATAACGGTAA
* *
671629 GCTCATACGAGCTAAATGACGGTAAGCTCATACGAGGTGAA
1 GCTCATACGAGCTGAATGACGGTAAGCTCATACGAGCTGAA
671670 ATTGGTCACC
Statistics
Matches: 121, Mismatches: 16, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
47 5 0.04
49 26 0.21
50 87 0.72
51 3 0.02
ACGTcount: A:0.32, C:0.20, G:0.26, T:0.23
Consensus pattern (50 bp):
GCTCATACGAGCTGAATGACGGTAAGCTCATACGAGCTGAATAACGGTAA
Found at i:671628 original size:75 final size:73
Alignment explanation
Indices: 671499--671669 Score: 234
Period size: 75 Copynumber: 2.3 Consensus size: 73
671489 AGCTCTGAAT
* * * * *
671499 CGGTATGCTCTTACGAGCTGTAATCGGTAAGCTCATACAAGCTGAGTAATGGTAAGCTCATGCGA
1 CGGTAAGCTCATACGAGCTG-AATCGGTAAGCTCATACAAGCTGAATAACGGTAAGCTCATACGA
*
671564 GCTGAATAA
65 GCTAAATAA
*
671573 CGGTAAGCTCATACGAGCTGAATGACGGTAAGCTCATACAAGCTGAATGACGGTAAGCTCATACG
1 CGGTAAGCTCATACGAGCTGAAT--CGGTAAGCTCATACAAGCTGAATAACGGTAAGCTCATACG
*
671638 AGCTAAATGA
64 AGCTAAATAA
*
671648 CGGTAAGCTCATACGAGGTGAA
1 CGGTAAGCTCATACGAGCTGAA
671670 ATTGGTCACC
Statistics
Matches: 86, Mismatches: 9, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
73 3 0.03
74 18 0.21
75 65 0.76
ACGTcount: A:0.32, C:0.19, G:0.26, T:0.22
Consensus pattern (73 bp):
CGGTAAGCTCATACGAGCTGAATCGGTAAGCTCATACAAGCTGAATAACGGTAAGCTCATACGAG
CTAAATAA
Found at i:679430 original size:50 final size:51
Alignment explanation
Indices: 679337--679446 Score: 136
Period size: 50 Copynumber: 2.2 Consensus size: 51
679327 GGTATACTTT
* * *
679337 TACGAGCT--ATAATCGGTAAGCTTATACGAGATGAGTAACGGTAAGCTCA
1 TACGAGCTGAATAATCGGTAAGCTCATACGAGATAAATAACGGTAAGCTCA
* * *
679386 TACGAGCTGAATAAT-GGTAAGCTCATATGAGCTAAATAATGGTAAGCTCA
1 TACGAGCTGAATAATCGGTAAGCTCATACGAGATAAATAACGGTAAGCTCA
*
679436 TACAAGCTGAA
1 TACGAGCTGAA
679447 ATCGATAACC
Statistics
Matches: 52, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
49 8 0.15
50 39 0.75
51 5 0.10
ACGTcount: A:0.37, C:0.15, G:0.23, T:0.25
Consensus pattern (51 bp):
TACGAGCTGAATAATCGGTAAGCTCATACGAGATAAATAACGGTAAGCTCA
Found at i:679443 original size:25 final size:25
Alignment explanation
Indices: 679337--679448 Score: 120
Period size: 25 Copynumber: 4.5 Consensus size: 25
679327 GGTATACTTT
*
679337 TACGAGCT--ATAATCGGTAAGCTTA
1 TACGAGCTAAATAAT-GGTAAGCTCA
* * * *
679361 TACGAGATGAGTAACGGTAAGCTCA
1 TACGAGCTAAATAATGGTAAGCTCA
*
679386 TACGAGCTGAATAATGGTAAGCTCA
1 TACGAGCTAAATAATGGTAAGCTCA
*
679411 TATGAGCTAAATAATGGTAAGCTCA
1 TACGAGCTAAATAATGGTAAGCTCA
*
679436 TACAAGCTGAAAT
1 TACGAGCT-AAAT
679449 CGATAACCCT
Statistics
Matches: 74, Mismatches: 11, Indels: 4
0.83 0.12 0.04
Matches are distributed among these distances:
24 7 0.09
25 60 0.81
26 7 0.09
ACGTcount: A:0.38, C:0.15, G:0.22, T:0.25
Consensus pattern (25 bp):
TACGAGCTAAATAATGGTAAGCTCA
Found at i:687573 original size:28 final size:28
Alignment explanation
Indices: 687536--687605 Score: 104
Period size: 28 Copynumber: 2.5 Consensus size: 28
687526 TGGTTATACA
* *
687536 TATATTATATATATGAATGGCTTTATTT
1 TATATAATATATATGAATGACTTTATTT
*
687564 TATATAATATATATGCATGACTTTATTT
1 TATATAATATATATGAATGACTTTATTT
*
687592 CATATAATATATAT
1 TATATAATATATAT
687606 TAATAGATTT
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
28 38 1.00
ACGTcount: A:0.37, C:0.06, G:0.07, T:0.50
Consensus pattern (28 bp):
TATATAATATATATGAATGACTTTATTT
Found at i:695974 original size:27 final size:27
Alignment explanation
Indices: 695932--696226 Score: 401
Period size: 27 Copynumber: 10.9 Consensus size: 27
695922 TTAACTTTAT
* *
695932 CGAAATACCCTTGATGGATAAAATTAC
1 CGAAATACCCTCGATGGGTAAAATTAC
*
695959 CGAAATACCCCCGATGGGTAAAATTAC
1 CGAAATACCCTCGATGGGTAAAATTAC
*
695986 CGAAATACCCTCGATAGGTAAAATTAC
1 CGAAATACCCTCGATGGGTAAAATTAC
*
696013 TGAAATACCCTCGATGGGTAAAATTAC
1 CGAAATACCCTCGATGGGTAAAATTAC
** *
696040 TAAAATACCCTTGATGGGTAAAATTAC
1 CGAAATACCCTCGATGGGTAAAATTAC
**
696067 TAAAATACCCTCGATGGGTAAAATTAC
1 CGAAATACCCTCGATGGGTAAAATTAC
* * * *
696094 CAAAATACCTTCGATAGGTAAAATTAT
1 CGAAATACCCTCGATGGGTAAAATTAC
* *
696121 CGAAATACCCTCGATAGGTAAAATTAT
1 CGAAATACCCTCGATGGGTAAAATTAC
*
696148 CGAAATACCCTCAATGGGTAAAATTAC
1 CGAAATACCCTCGATGGGTAAAATTAC
* * *
696175 TGAAATACCCTCGATCGGTAAAATTAT
1 CGAAATACCCTCGATGGGTAAAATTAC
*
696202 CGAAATACCTTCGATGGGTAAAATT
1 CGAAATACCCTCGATGGGTAAAATT
696227 GACTATTATG
Statistics
Matches: 242, Mismatches: 26, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 242 1.00
ACGTcount: A:0.40, C:0.19, G:0.16, T:0.26
Consensus pattern (27 bp):
CGAAATACCCTCGATGGGTAAAATTAC
Found at i:703001 original size:26 final size:24
Alignment explanation
Indices: 702972--703064 Score: 82
Period size: 26 Copynumber: 3.8 Consensus size: 24
702962 AAACTCACTA
*
702972 CAGCTGGTATGAGCTTACCGATATAT
1 CAGCTCGTATGAGCTTACCGAT-T-T
* *
702998 CAGCACATATGAGCTTACC-ATTT
1 CAGCTCGTATGAGCTTACCGATTT
*
703021 CAGCTCG-ATAGAGCTTACCGTTCTT
1 CAGCTCGTAT-GAGCTTACCGAT-TT
*
703046 CAGCTCGGAATGAGCTTAC
1 CAGCTC-GTATGAGCTTAC
703065 TGATCATGGC
Statistics
Matches: 56, Mismatches: 6, Indels: 10
0.78 0.08 0.14
Matches are distributed among these distances:
22 2 0.04
23 15 0.27
24 2 0.04
25 10 0.18
26 25 0.45
27 2 0.04
ACGTcount: A:0.26, C:0.25, G:0.20, T:0.29
Consensus pattern (24 bp):
CAGCTCGTATGAGCTTACCGATTT
Found at i:703034 original size:23 final size:26
Alignment explanation
Indices: 702979--703040 Score: 78
Period size: 23 Copynumber: 2.5 Consensus size: 26
702969 CTACAGCTGG
702979 TATGAGCTTACCGATATATCAGCACA
1 TATGAGCTTACCGATATATCAGCACA
*
703005 TATGAGCTTACC-AT-T-TCAGCTCGA
1 TATGAGCTTACCGATATATCAGCAC-A
703029 TA-GAGCTTACCG
1 TATGAGCTTACCG
703041 TTCTTCAGCT
Statistics
Matches: 33, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
23 15 0.45
24 4 0.12
25 2 0.06
26 12 0.36
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (26 bp):
TATGAGCTTACCGATATATCAGCACA
Found at i:712402 original size:56 final size:54
Alignment explanation
Indices: 712324--712669 Score: 314
Period size: 50 Copynumber: 6.6 Consensus size: 54
712314 GGGGATGAGA
* **
712324 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATTATTGAGGTTATGAGAGG
1 TCCCACGTAAGACCATGTCTGGGACATGGCATTGGCA-TACCGAGG-TATGAGAGG
**
712380 TCCCACGTAAGACCATGTCTGGGACATGGCATTGGCATTATTGAGGTTATGAGAGG
1 TCCCACGTAAGACCATGTCTGGGACATGGCATTGGCA-TACCGAGG-TATGAGAGG
* **
712436 TCCCACGTAAGACCATGTCTGGGACATGGCATGGGC--ACCGA--TATGAGAAC
1 TCCCACGTAAGACCATGTCTGGGACATGGCATTGGCATACCGAGGTATGAGAGG
* * * * **
712486 TCCCATGTAAGACCATATCTGGGATATGGCATTGGTAGTA-C-AGG-A--A-ACA
1 TCCCACGTAAGACCATGTCTGGGACATGGCATTGGCA-TACCGAGGTATGAGAGG
* *
712535 TCCTATGTAAGACCATGTCTGGGACATGGCATTGGC--ACCGA-G-ATGAGAGG
1 TCCCACGTAAGACCATGTCTGGGACATGGCATTGGCATACCGAGGTATGAGAGG
* * **
712585 TCCCCCGTAAGACCATGTCTGGGACATGGCATGGGC--ACCGA--TATGAGAAC
1 TCCCACGTAAGACCATGTCTGGGACATGGCATTGGCATACCGAGGTATGAGAGG
* * *
712635 TCCCATGTAAGACCATATCTGGGATATGGCATTGG
1 TCCCACGTAAGACCATGTCTGGGACATGGCATTGG
712670 TAGTACAGGA
Statistics
Matches: 249, Mismatches: 30, Indels: 28
0.81 0.10 0.09
Matches are distributed among these distances:
46 1 0.00
47 3 0.01
48 1 0.00
49 34 0.14
50 113 0.45
51 1 0.00
52 2 0.01
53 4 0.02
56 90 0.36
ACGTcount: A:0.27, C:0.21, G:0.29, T:0.24
Consensus pattern (54 bp):
TCCCACGTAAGACCATGTCTGGGACATGGCATTGGCATACCGAGGTATGAGAGG
Found at i:712410 original size:50 final size:49
Alignment explanation
Indices: 712324--712713 Score: 175
Period size: 50 Copynumber: 7.6 Consensus size: 49
712314 GGGGATGAGA
* *
712324 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATTATTGAGGTTATGAGAGG
1 TCCCACGTAAGACCATGTCTGGG--A---CA-TGGCATTAGTGA-GTTATGAGAGG
*
712380 TCCCACGTAAGACCATGTCTGGGACATGGCATTGGCATTATTGAGGTTATGAGAGG
1 TCCCACGTAAGACCATGTCTGGG--A---CA-TGGCATTAGTGA-GTTATGAGAGG
* * **
712436 TCCCACGTAAGACCATGTCTGGGACATGGCA-T-GGGCACCGATATGAGAAC
1 TCCCACGTAAGACCATGTCTGGGACATGGCATTAGTG-A--GTTATGAGAGG
* * * * * * * **
712486 TCCCATGTAAGACCATATCTGGGATATGGCATTGGT-AGTACAGGAAACA
1 TCCCACGTAAGACCATGTCTGGGACATGGCATTAGTGAGT-TATGAGAGG
* * **
712535 TCCTATGTAAGACCATGTCTGGGACATGGCATT-G-GCACCGAGATGAGAGG
1 TCCCACGTAAGACCATGTCTGGGACATGGCATTAGTG-A--GTTATGAGAGG
* * * **
712585 TCCCCCGTAAGACCATGTCTGGGACATGGCA-T-GGGCACCGATATGAGAAC
1 TCCCACGTAAGACCATGTCTGGGACATGGCATTAGTG-A--GTTATGAGAGG
* * * * * * * **
712635 TCCCATGTAAGACCATATCTGGGATATGGCATTGGT-AGTACAGGAAACA
1 TCCCACGTAAGACCATGTCTGGGACATGGCATTAGTGAGT-TATGAGAGG
* *
712684 TCCTATGTAAGACCATGTCTGGGACATGGC
1 TCCCACGTAAGACCATGTCTGGGACATGGC
712714 TTTGGCATGT
Statistics
Matches: 275, Mismatches: 46, Indels: 33
0.78 0.13 0.09
Matches are distributed among these distances:
48 4 0.01
49 70 0.25
50 115 0.42
51 5 0.02
52 2 0.01
54 1 0.00
56 78 0.28
ACGTcount: A:0.27, C:0.21, G:0.28, T:0.24
Consensus pattern (49 bp):
TCCCACGTAAGACCATGTCTGGGACATGGCATTAGTGAGTTATGAGAGG
Found at i:712581 original size:99 final size:99
Alignment explanation
Indices: 712324--712669 Score: 300
Period size: 99 Copynumber: 3.4 Consensus size: 99
712314 GGGGATGAGA
** **
712324 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATTATTGAGGTTATGAGAGGTCCCACGTA
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGC---ACCGA-G--ATGAGAACTCCCACGTA
* * ** * *
712389 AGACCATGTCTGGGACATGGCATTGGCATTATTGAGGTTATGAGAGG
60 AGACCATATCTGGGACATGGCATGGGCACGA--CAGG--A-GA-A-C
* * * *
712436 TCCCACGTAAGACCATGTCTGGGACATGGCATGGGCACCGATATGAGAACTCCCATGTAAGACCA
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAACTCCCACGTAAGACCA
* * *
712501 TATCTGGGATATGGCATTGGTA-GTACAGGA-AAC
66 TATCTGGGACATGGCATGGGCACG-ACAGGAGAAC
* ** *
712534 ATCCTATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGGTCCCCCGTAAGACC
1 -TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAACTCCCACGTAAGACC
* * *
712599 ATGTCTGGGACATGGCATGGGCACCGATATGAGAAC
65 ATATCTGGGACATGGCATGGGCA-CGACAGGAGAAC
* *
712635 TCCCATGTAAGACCATATCTGGGATATGGCATTGG
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGG
712670 TAGTACAGGA
Statistics
Matches: 198, Mismatches: 31, Indels: 22
0.79 0.12 0.09
Matches are distributed among these distances:
99 76 0.38
100 37 0.19
101 4 0.02
102 1 0.01
104 3 0.02
106 40 0.20
109 3 0.02
112 34 0.17
ACGTcount: A:0.27, C:0.21, G:0.29, T:0.24
Consensus pattern (99 bp):
TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAACTCCCACGTAAGACCA
TATCTGGGACATGGCATGGGCACGACAGGAGAAC
Found at i:712662 original size:149 final size:151
Alignment explanation
Indices: 712386--712720 Score: 584
Period size: 149 Copynumber: 2.2 Consensus size: 151
712376 GAGGTCCCAC
**
712386 GTAAGACCATGTCTGGGACATGGCATTGGCATTATTGAGGTTATGAGAGGTCCCACGTAAGACCA
1 GTAAGACCATGTCTGGGACATGGCATTGGC---ACCGAGG-TATGAGAGGTCCCACGTAAGACCA
712451 TGTCTGGGACATGGCATGGGCACCGATATGAGAACTCCCATGTAAGACCATATCTGGGATATGGC
62 TGTCTGGGACATGGCATGGGCACCGATATGAGAACTCCCATGTAAGACCATATCTGGGATATGGC
712516 ATTGGTAGTACAGGAAACATCCTAT
127 ATTGGTAGTACAGGAAACATCCTAT
*
712541 GTAAGACCATGTCTGGGACATGGCATTGGCACCGA-G-ATGAGAGGTCCCCCGTAAGACCATGTC
1 GTAAGACCATGTCTGGGACATGGCATTGGCACCGAGGTATGAGAGGTCCCACGTAAGACCATGTC
712604 TGGGACATGGCATGGGCACCGATATGAGAACTCCCATGTAAGACCATATCTGGGATATGGCATTG
66 TGGGACATGGCATGGGCACCGATATGAGAACTCCCATGTAAGACCATATCTGGGATATGGCATTG
712669 GTAGTACAGGAAACATCCTAT
131 GTAGTACAGGAAACATCCTAT
*
712690 GTAAGACCATGTCTGGGACATGGCTTTGGCA
1 GTAAGACCATGTCTGGGACATGGCATTGGCA
712721 TGTTATTATC
Statistics
Matches: 176, Mismatches: 4, Indels: 6
0.95 0.02 0.03
Matches are distributed among these distances:
149 142 0.81
151 1 0.01
152 3 0.02
155 30 0.17
ACGTcount: A:0.28, C:0.21, G:0.28, T:0.23
Consensus pattern (151 bp):
GTAAGACCATGTCTGGGACATGGCATTGGCACCGAGGTATGAGAGGTCCCACGTAAGACCATGTC
TGGGACATGGCATGGGCACCGATATGAGAACTCCCATGTAAGACCATATCTGGGATATGGCATTG
GTAGTACAGGAAACATCCTAT
Found at i:712947 original size:20 final size:20
Alignment explanation
Indices: 712922--712970 Score: 66
Period size: 20 Copynumber: 2.5 Consensus size: 20
712912 TGAGTTATTT
712922 AAGTAAGCAAGTAAGTAAAC
1 AAGTAAGCAAGTAAGTAAAC
*
712942 AAGTAAG-AGAGTAAGTAAAG
1 AAGTAAGCA-AGTAAGTAAAC
712962 AAG-AAGCAA
1 AAGTAAGCAA
712971 AGACCATGAT
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
19 5 0.19
20 21 0.81
ACGTcount: A:0.57, C:0.06, G:0.24, T:0.12
Consensus pattern (20 bp):
AAGTAAGCAAGTAAGTAAAC
Found at i:717433 original size:20 final size:20
Alignment explanation
Indices: 717408--717448 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
717398 GATAGCTTAA
717408 TTTTTGCTATGGAAAGAAAT
1 TTTTTGCTATGGAAAGAAAT
717428 TTTTTGCTATGGAAAGAAAT
1 TTTTTGCTATGGAAAGAAAT
717448 T
1 T
717449 AGGCAATAAG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.34, C:0.05, G:0.20, T:0.41
Consensus pattern (20 bp):
TTTTTGCTATGGAAAGAAAT
Found at i:734736 original size:36 final size:36
Alignment explanation
Indices: 734684--734789 Score: 140
Period size: 36 Copynumber: 2.9 Consensus size: 36
734674 AGTAAACTCT
* *
734684 ATTCAGTTCAGTAGCCTTCCAGATCTATTCTGACTA
1 ATTCAGTTCAGCAGCCTTTCAGATCTATTCTGACTA
* * * * *
734720 ATTCAGTCCAGCAGCCTTTCAGATCTATTTTAATTG
1 ATTCAGTTCAGCAGCCTTTCAGATCTATTCTGACTA
*
734756 ATTCAGTTCAGCAGCCTTTCGGATCTATTCTGAC
1 ATTCAGTTCAGCAGCCTTTCAGATCTATTCTGAC
734790 CGATGCACTC
Statistics
Matches: 58, Mismatches: 12, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
36 58 1.00
ACGTcount: A:0.24, C:0.25, G:0.15, T:0.37
Consensus pattern (36 bp):
ATTCAGTTCAGCAGCCTTTCAGATCTATTCTGACTA
Found at i:747362 original size:16 final size:16
Alignment explanation
Indices: 747341--747376 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
747331 TAGAGTGGAA
* *
747341 AAAATTGGAAGGGTGG
1 AAAATTGAAAGGGTAG
747357 AAAATTGAAAGGGTAG
1 AAAATTGAAAGGGTAG
747373 AAAA
1 AAAA
747377 CTAGAATGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.50, C:0.00, G:0.33, T:0.17
Consensus pattern (16 bp):
AAAATTGAAAGGGTAG
Found at i:747570 original size:22 final size:22
Alignment explanation
Indices: 747545--747587 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
747535 CATATACCTC
747545 TCTCTCATT-TTTTCTCTTCTCA
1 TCTCTC-TTATTTTCTCTTCTCA
*
747567 TCTCTCTTATTTTCTTTTCTC
1 TCTCTCTTATTTTCTCTTCTC
747588 TCACTTTTCT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 2 0.11
22 17 0.89
ACGTcount: A:0.07, C:0.30, G:0.00, T:0.63
Consensus pattern (22 bp):
TCTCTCTTATTTTCTCTTCTCA
Found at i:749783 original size:3 final size:3
Alignment explanation
Indices: 749775--749825 Score: 102
Period size: 3 Copynumber: 17.0 Consensus size: 3
749765 TTTTTTACCC
749775 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
749823 TTA
1 TTA
749826 GTACTATGAT
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 48 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:749965 original size:24 final size:24
Alignment explanation
Indices: 749926--749974 Score: 64
Period size: 24 Copynumber: 2.0 Consensus size: 24
749916 CTAGCATGAC
* *
749926 ATTTTTTATTTCATCTTTTATTTT
1 ATTTTTTATTTCATCTATCATTTT
749950 ATTTATTTATTT-ATCTATCATTTT
1 ATTT-TTTATTTCATCTATCATTTT
749974 A
1 A
749975 ATATCATCAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
24 15 0.68
25 7 0.32
ACGTcount: A:0.22, C:0.08, G:0.00, T:0.69
Consensus pattern (24 bp):
ATTTTTTATTTCATCTATCATTTT
Found at i:751248 original size:31 final size:32
Alignment explanation
Indices: 751188--751248 Score: 79
Period size: 31 Copynumber: 1.9 Consensus size: 32
751178 TTGGTGCAAT
* *
751188 TATACATACGAAACTTTGATTGTGGTTCAAATG
1 TATACATA-GAAACTTTAATTGTGATTCAAATG
*
751221 TATACAT-GAAACTTTAATTTTGATTCAA
1 TATACATAGAAACTTTAATTGTGATTCAA
751249 TCATACACAT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
31 18 0.72
33 7 0.28
ACGTcount: A:0.36, C:0.11, G:0.13, T:0.39
Consensus pattern (32 bp):
TATACATAGAAACTTTAATTGTGATTCAAATG
Found at i:751685 original size:18 final size:18
Alignment explanation
Indices: 751662--751699 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
751652 AAACAAATTT
*
751662 TTATAAAGGTTATATATA
1 TTATAAAAGTTATATATA
*
751680 TTATAAAATTTATATATA
1 TTATAAAAGTTATATATA
751698 TT
1 TT
751700 GACTTCATTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.45, C:0.00, G:0.05, T:0.50
Consensus pattern (18 bp):
TTATAAAAGTTATATATA
Found at i:757298 original size:41 final size:40
Alignment explanation
Indices: 757242--757680 Score: 317
Period size: 40 Copynumber: 10.9 Consensus size: 40
757232 AGATGCATAA
* *
757242 CAGGGGCACCAAAGTGCAATCAAGAGCATGA-ATGTGCGA-T
1 CAGGGGCACCAAAGTGCAAACAAGAGCA-CATATGTGC-ATT
* *
757282 CAGGGGGCGCCAAAGTGCAAACAAGGGCACATATGTGCATT
1 CA-GGGGCACCAAAGTGCAAACAAGAGCACATATGTGCATT
* * *
757323 CAGGGGCACCAAAGTGCAAATAGGGGCACATATGTGCATT
1 CAGGGGCACCAAAGTGCAAACAAGAGCACATATGTGCATT
* * * * * *
757363 TAGGGGTACCGAAGTACAAACAAGGGCACAAATGTGCATT
1 CAGGGGCACCAAAGTGCAAACAAGAGCACATATGTGCATT
* * * * * *
757403 CAGGGGTATCGAAGTGCAAACAGGGGCACAAATGTGCATT
1 CAGGGGCACCAAAGTGCAAACAAGAGCACATATGTGCATT
* * * * * *
757443 CAGGGGTACCGAAGTACAAACAGGGGCACAAATGTGCATT
1 CAGGGGCACCAAAGTGCAAACAAGAGCACATATGTGCATT
* * * * * *
757483 CAGGGGTATCGAAGTGCAAACAGGGGCACAAATGTGCATT
1 CAGGGGCACCAAAGTGCAAACAAGAGCACATATGTGCATT
* * * * * *
757523 CAGGGGTACCGAAGTACAAACAGGGGCACAAATGTGCATT
1 CAGGGGCACCAAAGTGCAAACAAGAGCACATATGTGCATT
* * * * * *
757563 CAGGGGTATCGAAGTGCAAACAGGGGCACAAATGTGCATT
1 CAGGGGCACCAAAGTGCAAACAAGAGCACATATGTGCATT
* * * * * * * *
757603 CAGGGGTACCGAAGTACAAATAGGGGAACAGATGTGCATT
1 CAGGGGCACCAAAGTGCAAACAAGAGCACATATGTGCATT
* * * * *
757643 TAGGGGTACCGAAGTACAAACAAGGGCAC-TGATGTGCA
1 CAGGGGCACCAAAGTGCAAACAAGAGCACAT-ATGTGCA
757681 AATAAGGGCA
Statistics
Matches: 359, Mismatches: 36, Indels: 8
0.89 0.09 0.02
Matches are distributed among these distances:
40 327 0.91
41 32 0.09
ACGTcount: A:0.34, C:0.19, G:0.31, T:0.16
Consensus pattern (40 bp):
CAGGGGCACCAAAGTGCAAACAAGAGCACATATGTGCATT
Found at i:757319 original size:20 final size:20
Alignment explanation
Indices: 757296--757600 Score: 111
Period size: 20 Copynumber: 15.2 Consensus size: 20
757286 GGGCGCCAAA
*
757296 GTGCAAACAAGGGCACATAT
1 GTGCAAACAGGGGCACATAT
** *
757316 GTGCATTCAGGGGCACCA-AA
1 GTGCAAACAGGGGCA-CATAT
*
757336 GTGCAAATAGGGGCACATAT
1 GTGCAAACAGGGGCACATAT
*** * ** *
757356 GTGCATTTAGGGGTACCGAA
1 GTGCAAACAGGGGCACATAT
* * *
757376 GTACAAACAAGGGCACAAAT
1 GTGCAAACAGGGGCACATAT
** *
757396 GTGCATTCAGGGGTATCGA-A-
1 GTGCAAACAGGGGCA-C-ATAT
*
757416 GTGCAAACAGGGGCACAAAT
1 GTGCAAACAGGGGCACATAT
** * ** *
757436 GTGCATTCAGGGGTACCGAA
1 GTGCAAACAGGGGCACATAT
* *
757456 GTACAAACAGGGGCACAAAT
1 GTGCAAACAGGGGCACATAT
** *
757476 GTGCATTCAGGGGTATCGA-A-
1 GTGCAAACAGGGGCA-C-ATAT
*
757496 GTGCAAACAGGGGCACAAAT
1 GTGCAAACAGGGGCACATAT
** * ** *
757516 GTGCATTCAGGGGTACCGAA
1 GTGCAAACAGGGGCACATAT
* *
757536 GTACAAACAGGGGCACAAAT
1 GTGCAAACAGGGGCACATAT
** *
757556 GTGCATTCAGGGGTATCGA-A-
1 GTGCAAACAGGGGCA-C-ATAT
*
757576 GTGCAAACAGGGGCACAAAT
1 GTGCAAACAGGGGCACATAT
757596 GTGCA
1 GTGCA
757601 TTCAGGGGTA
Statistics
Matches: 200, Mismatches: 71, Indels: 28
0.67 0.24 0.09
Matches are distributed among these distances:
18 3 0.01
19 8 0.04
20 178 0.89
21 8 0.04
22 3 0.01
ACGTcount: A:0.34, C:0.19, G:0.30, T:0.17
Consensus pattern (20 bp):
GTGCAAACAGGGGCACATAT
Found at i:757342 original size:40 final size:40
Alignment explanation
Indices: 757294--757680 Score: 567
Period size: 40 Copynumber: 9.7 Consensus size: 40
757284 GGGGGCGCCA
* * * *
757294 AAGTGCAAACAAGGGCACATATGTGCATTCAGGGGCACCA
1 AAGTGCAAACAGGGGCACAAATGTGCATTCAGGGGTACCG
* * *
757334 AAGTGCAAATAGGGGCACATATGTGCATTTAGGGGTACCG
1 AAGTGCAAACAGGGGCACAAATGTGCATTCAGGGGTACCG
* * *
757374 AAGTACAAACAAGGGCACAAATGTGCATTCAGGGGTATCG
1 AAGTGCAAACAGGGGCACAAATGTGCATTCAGGGGTACCG
757414 AAGTGCAAACAGGGGCACAAATGTGCATTCAGGGGTACCG
1 AAGTGCAAACAGGGGCACAAATGTGCATTCAGGGGTACCG
* *
757454 AAGTACAAACAGGGGCACAAATGTGCATTCAGGGGTATCG
1 AAGTGCAAACAGGGGCACAAATGTGCATTCAGGGGTACCG
757494 AAGTGCAAACAGGGGCACAAATGTGCATTCAGGGGTACCG
1 AAGTGCAAACAGGGGCACAAATGTGCATTCAGGGGTACCG
* *
757534 AAGTACAAACAGGGGCACAAATGTGCATTCAGGGGTATCG
1 AAGTGCAAACAGGGGCACAAATGTGCATTCAGGGGTACCG
757574 AAGTGCAAACAGGGGCACAAATGTGCATTCAGGGGTACCG
1 AAGTGCAAACAGGGGCACAAATGTGCATTCAGGGGTACCG
* * * * *
757614 AAGTACAAATAGGGGAACAGATGTGCATTTAGGGGTACCG
1 AAGTGCAAACAGGGGCACAAATGTGCATTCAGGGGTACCG
* * **
757654 AAGTACAAACAAGGGCACTGATGTGCA
1 AAGTGCAAACAGGGGCACAAATGTGCA
757681 AATAAGGGCA
Statistics
Matches: 316, Mismatches: 31, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
40 316 1.00
ACGTcount: A:0.34, C:0.18, G:0.30, T:0.17
Consensus pattern (40 bp):
AAGTGCAAACAGGGGCACAAATGTGCATTCAGGGGTACCG
Found at i:757627 original size:20 final size:20
Alignment explanation
Indices: 757604--757662 Score: 64
Period size: 20 Copynumber: 3.0 Consensus size: 20
757594 ATGTGCATTC
757604 AGGGGTACCGAAGTACAAAT
1 AGGGGTACCGAAGTACAAAT
* * * * **
757624 AGGGGAACAGATGTGCATTT
1 AGGGGTACCGAAGTACAAAT
757644 AGGGGTACCGAAGTACAAA
1 AGGGGTACCGAAGTACAAA
757663 CAAGGGCACT
Statistics
Matches: 27, Mismatches: 12, Indels: 0
0.69 0.31 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.37, C:0.14, G:0.32, T:0.17
Consensus pattern (20 bp):
AGGGGTACCGAAGTACAAAT
Found at i:762437 original size:38 final size:37
Alignment explanation
Indices: 762362--762442 Score: 87
Period size: 38 Copynumber: 2.2 Consensus size: 37
762352 AAGTATAAAA
* *
762362 ATAAAATTAAACTTAAAATATTAAAATTAAAAGAAATT
1 ATAAAATTAAACTTAAAATA-TAAAACTAAAAAAAATT
762400 ATAAAATTAGAA-TTAAAATA-AAAACTAAAACTAAAATT
1 ATAAAATTA-AACTTAAAATATAAAACTAAAA--AAAATT
762438 A-AAAA
1 ATAAAA
762443 GTGGCTTTAA
Statistics
Matches: 38, Mismatches: 2, Indels: 7
0.81 0.04 0.15
Matches are distributed among these distances:
36 9 0.24
37 4 0.11
38 23 0.61
39 2 0.05
ACGTcount: A:0.67, C:0.04, G:0.02, T:0.27
Consensus pattern (37 bp):
ATAAAATTAAACTTAAAATATAAAACTAAAAAAAATT
Found at i:762714 original size:24 final size:25
Alignment explanation
Indices: 762686--762733 Score: 80
Period size: 25 Copynumber: 2.0 Consensus size: 25
762676 TGGGCCATTC
762686 TCCAAAA-TATTATTGTATGTAATT
1 TCCAAAACTATTATTGTATGTAATT
*
762710 TCCAAAACTTTTATTGTATGTAAT
1 TCCAAAACTATTATTGTATGTAAT
762734 AGGCAATTCT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
24 7 0.32
25 15 0.68
ACGTcount: A:0.35, C:0.10, G:0.08, T:0.46
Consensus pattern (25 bp):
TCCAAAACTATTATTGTATGTAATT
Found at i:763257 original size:24 final size:24
Alignment explanation
Indices: 763230--763275 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
763220 TCAAAGAAAT
*
763230 TTGAGTCGTATTTTGAGTTGTGTA
1 TTGAGTCGTATTTAGAGTTGTGTA
* *
763254 TTGAGTTGTCTTTAGAGTTGTG
1 TTGAGTCGTATTTAGAGTTGTG
763276 CTTGTCACGC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.15, C:0.04, G:0.30, T:0.50
Consensus pattern (24 bp):
TTGAGTCGTATTTAGAGTTGTGTA
Found at i:767357 original size:34 final size:34
Alignment explanation
Indices: 767309--767469 Score: 159
Period size: 34 Copynumber: 4.7 Consensus size: 34
767299 AGCATGAGAT
* * *
767309 TTGCTACTGAATTGAAT-TGATATAACCATATTAA
1 TTGCTACCGTATTG-ATCTGATATAAGCATATTAA
*
767343 GTGCTACCGTATTGATCTG-TCATAAGCATATTAA
1 TTGCTACCGTATTGATCTGAT-ATAAGCATATTAA
*
767377 TTAG-TACCGTATTGATCT-ATTATGAGCATATTAA
1 TT-GCTACCGTATTGATCTGA-TATAAGCATATTAA
* * *
767411 TTGCTATCGTATTGATCTGTTATAAGAATATTAA
1 TTGCTACCGTATTGATCTGATATAAGCATATTAA
* * *
767445 TTGCTACCTTAATGATCTGTTATAA
1 TTGCTACCGTATTGATCTGATATAA
767470 ACATGTCATA
Statistics
Matches: 107, Mismatches: 13, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
33 4 0.04
34 101 0.94
35 2 0.02
ACGTcount: A:0.32, C:0.13, G:0.14, T:0.40
Consensus pattern (34 bp):
TTGCTACCGTATTGATCTGATATAAGCATATTAA
Found at i:767391 original size:68 final size:68
Alignment explanation
Indices: 767329--767469 Score: 185
Period size: 68 Copynumber: 2.1 Consensus size: 68
767319 ATTGAATTGA
*
767329 TATAACCATATTAAGTGCTACCGTATTGATCTGTCATAAGCATATTAATTAGTACCGTATTGATC
1 TATAACCATATTAAGTGCTACCGTATTGATCTGTCATAAGAATATTAATTAGTACCGTATTGATC
767394 TAT
66 TAT
* * * * * * *
767397 TATGAGCATATTAATTGCTATCGTATTGATCTGTTATAAGAATATTAATT-GCTACCTTAATGAT
1 TATAACCATATTAAGTGCTACCGTATTGATCTGTCATAAGAATATTAATTAG-TACCGTATTGAT
*
767461 CTGT
65 CTAT
767465 TATAA
1 TATAA
767470 ACATGTCATA
Statistics
Matches: 62, Mismatches: 10, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
67 1 0.02
68 61 0.98
ACGTcount: A:0.33, C:0.13, G:0.13, T:0.40
Consensus pattern (68 bp):
TATAACCATATTAAGTGCTACCGTATTGATCTGTCATAAGAATATTAATTAGTACCGTATTGATC
TAT
Found at i:767654 original size:44 final size:44
Alignment explanation
Indices: 767589--767706 Score: 146
Period size: 44 Copynumber: 2.7 Consensus size: 44
767579 ATTTGTTTTT
* * * *
767589 TATCCACAGCCGGAGGTAGATTTTATCTGCGAGATTTTTCTGTC
1 TATCCACAGCCAGAGGTAGATTTTATCTACGAGATTTTGCTATC
* * * *
767633 TATCCATAGCCAGAGGCAGATTCTATCTACGAGATTTTGCTATG
1 TATCCACAGCCAGAGGTAGATTTTATCTACGAGATTTTGCTATC
**
767677 TATCCACAGTTAGAGGTAGATTTTATCTAC
1 TATCCACAGCCAGAGGTAGATTTTATCTAC
767707 AAGGTTATGT
Statistics
Matches: 61, Mismatches: 13, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
44 61 1.00
ACGTcount: A:0.25, C:0.19, G:0.20, T:0.35
Consensus pattern (44 bp):
TATCCACAGCCAGAGGTAGATTTTATCTACGAGATTTTGCTATC
Found at i:772459 original size:59 final size:59
Alignment explanation
Indices: 772386--772503 Score: 227
Period size: 59 Copynumber: 2.0 Consensus size: 59
772376 ATTTCACTAA
772386 TCCTATGCCAATTTTTGTCCATCAACTAACTAATGGTCTAATTACCACATAAAGACCTC
1 TCCTATGCCAATTTTTGTCCATCAACTAACTAATGGTCTAATTACCACATAAAGACCTC
*
772445 TCCTATGCCCATTTTTGTCCATCAACTAACTAATGGTCTAATTACCACATAAAGACCTC
1 TCCTATGCCAATTTTTGTCCATCAACTAACTAATGGTCTAATTACCACATAAAGACCTC
772504 CAATTTAAAA
Statistics
Matches: 58, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
59 58 1.00
ACGTcount: A:0.31, C:0.28, G:0.08, T:0.32
Consensus pattern (59 bp):
TCCTATGCCAATTTTTGTCCATCAACTAACTAATGGTCTAATTACCACATAAAGACCTC
Found at i:777597 original size:116 final size:117
Alignment explanation
Indices: 777444--777679 Score: 393
Period size: 116 Copynumber: 2.0 Consensus size: 117
777434 CACCTAATTC
* * * *
777444 CATGCATAAAAATCAATCCCATTATGTGCGTATCCACAACATAAAGACCTAATTCAAACACCTAC
1 CATGCATAAAAACCAATCCCATTATGTGCCTATCCACAACATAAACACCTAATTCAAACACCTAA
*
777509 CAAATCATACCGCATTTATCACTTTCAAGCCATTACAAGTATACCATAACAA
66 CAAATCATACCGCATTTATCACTTTCAAGCCATTACAAGCATACCATAACAA
* *
777561 CATGCATAAAAACCAAT-CCATTGTGTGCCTATCCACAACATAAACACTTAATTCAAACACCTAA
1 CATGCATAAAAACCAATCCCATTATGTGCCTATCCACAACATAAACACCTAATTCAAACACCTAA
*
777625 CTAATCATACCGCATTTATCACTTTCAAGCCATTACAAGCATACCATAACAA
66 CAAATCATACCGCATTTATCACTTTCAAGCCATTACAAGCATACCATAACAA
777677 CAT
1 CAT
777680 ACATTTCAAT
Statistics
Matches: 111, Mismatches: 8, Indels: 1
0.93 0.07 0.01
Matches are distributed among these distances:
116 95 0.86
117 16 0.14
ACGTcount: A:0.41, C:0.28, G:0.06, T:0.25
Consensus pattern (117 bp):
CATGCATAAAAACCAATCCCATTATGTGCCTATCCACAACATAAACACCTAATTCAAACACCTAA
CAAATCATACCGCATTTATCACTTTCAAGCCATTACAAGCATACCATAACAA
Found at i:780746 original size:29 final size:29
Alignment explanation
Indices: 780694--780799 Score: 72
Period size: 29 Copynumber: 3.6 Consensus size: 29
780684 CAATTTTCAT
** ** *
780694 AAAAGGAAACCTTTGTGGCTATCTTTGTA
1 AAAAGGAAGTCTTTGTGGAAATCTATGTA
* *
780723 AAAAGGATGTCTTTGTGGAAATCTATGTT
1 AAAAGGAAGTCTTTGTGGAAATCTATGTA
* * **
780752 TAAAGGAAGTCTTTATGGCAGTCTCTAT-TA
1 AAAAGGAAGTCTTTGTGG-A-AATCTATGTA
780782 AAAAGGAAG-CATTTGTGG
1 AAAAGGAAGTC-TTTGTGG
780800 CGATTTCTGT
Statistics
Matches: 59, Mismatches: 15, Indels: 5
0.75 0.19 0.06
Matches are distributed among these distances:
29 38 0.64
30 16 0.27
31 5 0.08
ACGTcount: A:0.32, C:0.10, G:0.24, T:0.34
Consensus pattern (29 bp):
AAAAGGAAGTCTTTGTGGAAATCTATGTA
Found at i:782204 original size:400 final size:401
Alignment explanation
Indices: 781455--782253 Score: 1591
Period size: 400 Copynumber: 2.0 Consensus size: 401
781445 ACGAACTTAC
781455 AAAAGTTGTTTCTATTTTTAGGTCTATAAAGGAATATGCATCGAGAGACGATGCTAGGGCTACGC
1 AAAAGTTGTTTCTATTTTTAGGTCTATAAAGGAATATGCATCGAGAGACGATGCTAGGGCTACGC
781520 CAAAGAAGTGATGTGCTGGGCTGTTATGCATACAGAGGAAGTCAGATGGCATGTTGAGTCTGCGT
66 CAAAGAAGTGATGTGCTGGGCTGTTATGCATACAGAGGAAGTCAGATGGCATGTTGAGTCTGCGT
781585 TAAAGTTCACTAAGTAGTACCCCAAAGTATATCCAGAAGACTAAGAGATAAAGTAGGAAAGTTTG
131 TAAAGTTCACTAAGTAGTACCCCAAAGTATATCCAGAAGACTAAGAGATAAAGTAGGAAAGTTTG
781650 AAGTTTTATTGAGTTGAAATAATAACCATACATTGTATTTTGACAAAAAAACTTATAGTAACCAT
196 AAGTTTTATTGAGTTGAAATAATAACCATACATTGTATTTTGACAAAAAAACTTATAGTAACCAT
781715 TGATAGTAGCTTGTACATAGGCAAAATGTAAATGTACACCAATAAAAGATTCTATACACTCATAG
261 TGATAGTAGCTTGTACATAGGCAAAATGTAAATGTACACCAATAAAAGATTCTATACACTCATAG
781780 ATAGACTTTTACATAGATAAATAATAAAAAGAAATTTCAAGTTACATGTGTAAGAATGATGTAAC
326 ATAGACTTTTACATAGATAAATAATAAAAAGAAATTTCAAGTTACATGTGTAAGAATGATGTAAC
781845 ACCCGAGATCA
391 ACCCGAGATCA
781856 AAAAGTTG-TTCTATTTTTAGGTCTATAAAGGAATATGCATCGAGAGACGATGCTAGGGCTACGC
1 AAAAGTTGTTTCTATTTTTAGGTCTATAAAGGAATATGCATCGAGAGACGATGCTAGGGCTACGC
781920 CAAAGAAGTGATGTGCTGGGCTGTTATGCATACAGAGGAAGTCAGATGGCATGTTGAGTCTGCGT
66 CAAAGAAGTGATGTGCTGGGCTGTTATGCATACAGAGGAAGTCAGATGGCATGTTGAGTCTGCGT
781985 TAAAGTTCACTAAGTAGTACCCCAAAGTATATCCAGAAGACTAAGAGATAAAGTAGGAAAGTTTG
131 TAAAGTTCACTAAGTAGTACCCCAAAGTATATCCAGAAGACTAAGAGATAAAGTAGGAAAGTTTG
782050 AAGTTTTATTGAGTTGAAATAATAACCATACATTGTATTTTGACAAAAAAACTTATAGTAACCAT
196 AAGTTTTATTGAGTTGAAATAATAACCATACATTGTATTTTGACAAAAAAACTTATAGTAACCAT
782115 TGATAGTAGCTTGTACATAGGCAAAATGTAAATGTACACCAATAAAAGATTCTATACACTCATAG
261 TGATAGTAGCTTGTACATAGGCAAAATGTAAATGTACACCAATAAAAGATTCTATACACTCATAG
782180 ATAGACTTTTACATAGATAAATAATAAAAAGAAATTTCAAGTTACATGTGTAAGAATGATGTAAC
326 ATAGACTTTTACATAGATAAATAATAAAAAGAAATTTCAAGTTACATGTGTAAGAATGATGTAAC
782245 ACCCGAGAT
391 ACCCGAGAT
782254 TTGGATCCAG
Statistics
Matches: 398, Mismatches: 0, Indels: 1
1.00 0.00 0.00
Matches are distributed among these distances:
400 390 0.98
401 8 0.02
ACGTcount: A:0.39, C:0.13, G:0.20, T:0.28
Consensus pattern (401 bp):
AAAAGTTGTTTCTATTTTTAGGTCTATAAAGGAATATGCATCGAGAGACGATGCTAGGGCTACGC
CAAAGAAGTGATGTGCTGGGCTGTTATGCATACAGAGGAAGTCAGATGGCATGTTGAGTCTGCGT
TAAAGTTCACTAAGTAGTACCCCAAAGTATATCCAGAAGACTAAGAGATAAAGTAGGAAAGTTTG
AAGTTTTATTGAGTTGAAATAATAACCATACATTGTATTTTGACAAAAAAACTTATAGTAACCAT
TGATAGTAGCTTGTACATAGGCAAAATGTAAATGTACACCAATAAAAGATTCTATACACTCATAG
ATAGACTTTTACATAGATAAATAATAAAAAGAAATTTCAAGTTACATGTGTAAGAATGATGTAAC
ACCCGAGATCA
Found at i:791513 original size:998 final size:998
Alignment explanation
Indices: 789579--791559 Score: 3800
Period size: 998 Copynumber: 2.0 Consensus size: 998
789569 TGGAAGTGAT
* *
789579 ACCATTTCCTTACTTGTATTGATGTTATTAAATATTGTAATCAAATCCTAATGTTAATGGATAGG
1 ACCATTTCCTTACTTGTATTGATGCTATTAAATATTGTAACCAAATCCTAATGTTAATGGATAGG
* *
789644 TAAAATGAATATATTAATCATGAAATTGCTTGCAAAAATGTCAATGTCATGTGTGCATAGGTATT
66 TAAAATGAATAGATTAATCATGAAATTGCTTGCAAAAATGTCAATGTCATGTGTGCACAGGTATT
789709 GAAATTCTATTTAACTATAAGCATATAATGTTCACTTGGAAAGTTTGTAACAAATGTTGGATTTG
131 GAAATTCTATTTAACTATAAGCATATAATGTTCACTTGGAAAGTTTGTAACAAATGTTGGATTTG
789774 GTATGATTGATGAGTGTCTATTTAGGTTGATTTGTTAATTGGTATATGCATCATGTTGTATCAAT
196 GTATGATTGATGAGTGTCTATTTAGGTTGATTTGTTAATTGGTATATGCATCATGTTGTATCAAT
* *
789839 GTAGCTATGCTTTTATATCTTGAATCATGAAAGTACTAGTGCTTAACAACCCATTTTTCAGTTGT
261 GTAGCTATGCTTTTATATCTTGAATCATGAAAGTACTAGTGCCTAACAACCCATTTTTCAGTGGT
* * *
789904 GTCGAAAATAGTGGTTTCTAGACCAAAATACCAACAAGACAGTCCATAGATATATTTAATTAATA
326 GTCAAAAATAGTGGTTTCGAGACCAAAATACCAACAAGACAGTCCATAGATATATTTAACTAATA
789969 TTTATGAGTTAAATATAGTGTAATATTGAATCATGATTTAATAGAATTTATTAATTGGCCAGTTG
391 TTTATGAGTTAAATATAGTGTAATATTGAATCATGATTTAATAGAATTTATTAATTGGCCAGTTG
790034 GTCAAGGTAGAAGTGGTGCGTATTAAAAGTCAAGTGGTTTCGAAAAATGAGGTTTTGAGACATCG
456 GTCAAGGTAGAAGTGGTGCGTATTAAAAGTCAAGTGGTTTCGAAAAATGAGGTTTTGAGACATCG
790099 TTTCTGTAAATCGAGCCCGTAAATATTTTTATTAAATATTCATGAAGCTGTTATATAGGTGAATT
521 TTTCTGTAAATCGAGCCCGTAAATATTTTTATTAAATATTCATGAAGCTGTTATATAGGTGAATT
790164 GAAGTTTGGTCCAAAAATTTTGATGATTTGATAGTTAATTATGAAAAAAGGACTAAACCGTAAAC
586 GAAGTTTGGTCCAAAAATTTTGATGATTTGATAGTTAATTATGAAAAAAGGACTAAACCGTAAAC
790229 TTAGTAAAAGTTAATTGATATTGGTTTTCATTTGTTAAAAGGCTAGATTAATTAATGTTAAGTGT
651 TTAGTAAAAGTTAATTGATATTGGTTTTCATTTGTTAAAAGGCTAGATTAATTAATGTTAAGTGT
790294 TTTAAGTTGCAAATTACCCTATTTATAGCTAGTGGCCAATTAGTATATATTTATTTGAAATTTTA
716 TTTAAGTTGCAAATTACCCTATTTATAGCTAGTGGCCAATTAGTATATATTTATTTGAAATTTTA
790359 TAATTTAAAATTTAATTAAATTAAGTGAAAATAATATAATAAAGTTTAAAATATAAAACAAAAGA
781 TAATTTAAAATTTAATTAAATTAAGTGAAAATAATATAATAAAGTTTAAAATATAAAACAAAAGA
*
790424 AATCATCATCATTGTAATGTCCGTCCTATATCCGATCCGAGCTATAAGATATTAAAAGTATAAAA
846 AATCATCATCATTGTAATGTCCGTCCTATATCCGATCCGAGCTATAAGATATGAAAAGTATAAAA
* * *
790489 ATTTAAAATCATTCACAATTTAATAAAAAAATTATCAAAAAATTCAATTGCAATAGTTTCTATGC
911 ATTTAAAATCATTCACAATTTAATAAAAAAATAACCAAAAAATTCAATTGCAATAATTTCTATGC
790554 TATGCAATAATTTAAAATCATTC
976 TATGCAATAATTTAAAATCATTC
790577 ACCATTTCCTTACTTGTATTGATGCTATTAAATATTGTAACCAAATCCTAATGTTAATGGATAGG
1 ACCATTTCCTTACTTGTATTGATGCTATTAAATATTGTAACCAAATCCTAATGTTAATGGATAGG
790642 TAAAATGAATAGATTAATCATGAAATTGCTTGCAAAAATGTCAATGTCATGTGTGCACAGGTATT
66 TAAAATGAATAGATTAATCATGAAATTGCTTGCAAAAATGTCAATGTCATGTGTGCACAGGTATT
* *
790707 GAAATTCTATTTGATTATAAGCATATAATGTTCACTTGGAAAGTTTGTAACAAATGTTGGATTTG
131 GAAATTCTATTTAACTATAAGCATATAATGTTCACTTGGAAAGTTTGTAACAAATGTTGGATTTG
790772 GTATGATTGATGAGTGTCTATTTAGGTTGATTTGTTAATTGGTATATGCATCATGTTGTATCAAT
196 GTATGATTGATGAGTGTCTATTTAGGTTGATTTGTTAATTGGTATATGCATCATGTTGTATCAAT
790837 GTAGCTATGCTTTTATATCTTGAATCATGAAAGTACTAGTGCCTAACAACCCATTTTTCAGTGGT
261 GTAGCTATGCTTTTATATCTTGAATCATGAAAGTACTAGTGCCTAACAACCCATTTTTCAGTGGT
*
790902 GTCAAAAATAGTGGTTTCGAGACCAAAATACCAACAAGAGAGTCCATAGATATATTTAACTAATA
326 GTCAAAAATAGTGGTTTCGAGACCAAAATACCAACAAGACAGTCCATAGATATATTTAACTAATA
790967 TTTATGAGTTAAATATAGTGTAATATTGAATCATGATTTAATAGAATTTATTAATTGGCCAGTTG
391 TTTATGAGTTAAATATAGTGTAATATTGAATCATGATTTAATAGAATTTATTAATTGGCCAGTTG
791032 GTCAAGGTAGAAGTGGTGCGTATTAAAAGTCAAGTGGTTTCGAAAAATGAGGTTTTGAGACATCG
456 GTCAAGGTAGAAGTGGTGCGTATTAAAAGTCAAGTGGTTTCGAAAAATGAGGTTTTGAGACATCG
791097 TTTCTGTAAATCGAGCCCGTAAATATTTTTATTAAATATTCATGAAGCTGTTATATAGGTGAATT
521 TTTCTGTAAATCGAGCCCGTAAATATTTTTATTAAATATTCATGAAGCTGTTATATAGGTGAATT
791162 GAAGTTTGGTCCAAAAATTTTGATGATTTGATAGTTAATTATGAAAAAAGGACTAAACCGTAAAC
586 GAAGTTTGGTCCAAAAATTTTGATGATTTGATAGTTAATTATGAAAAAAGGACTAAACCGTAAAC
791227 TTAGTAAAAGTTAATTGATATTGGTTTTCATTTGTTAAAAGGCTAGATTAATTAATGTTAAGTGT
651 TTAGTAAAAGTTAATTGATATTGGTTTTCATTTGTTAAAAGGCTAGATTAATTAATGTTAAGTGT
791292 TTTAAGTTGCAAATTACCCTATTTATAGCTAGTGGCCAATTAGTATATATTTATTTGAAATTTTA
716 TTTAAGTTGCAAATTACCCTATTTATAGCTAGTGGCCAATTAGTATATATTTATTTGAAATTTTA
791357 TAATTTAAAATTTAATTAAATTAAGTGAAAATAATATAATAAAGTTTAAAATATAAAACAAAAGA
781 TAATTTAAAATTTAATTAAATTAAGTGAAAATAATATAATAAAGTTTAAAATATAAAACAAAAGA
791422 AATCATCATCATTGTAATGTCCGTCCTATATCCGATCCGAGCTATAAGATATGAAAAGTATAAAA
846 AATCATCATCATTGTAATGTCCGTCCTATATCCGATCCGAGCTATAAGATATGAAAAGTATAAAA
*
791487 ATTTAAAATCATTCACAATTTAATAAAAAAATAACCAAAAAATTCAGTTGCAATAATTTCTATGC
911 ATTTAAAATCATTCACAATTTAATAAAAAAATAACCAAAAAATTCAATTGCAATAATTTCTATGC
*
791552 TATTCAAT
976 TATGCAAT
791560 CAAAACGGGA
Statistics
Matches: 965, Mismatches: 18, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
998 965 1.00
ACGTcount: A:0.37, C:0.10, G:0.16, T:0.37
Consensus pattern (998 bp):
ACCATTTCCTTACTTGTATTGATGCTATTAAATATTGTAACCAAATCCTAATGTTAATGGATAGG
TAAAATGAATAGATTAATCATGAAATTGCTTGCAAAAATGTCAATGTCATGTGTGCACAGGTATT
GAAATTCTATTTAACTATAAGCATATAATGTTCACTTGGAAAGTTTGTAACAAATGTTGGATTTG
GTATGATTGATGAGTGTCTATTTAGGTTGATTTGTTAATTGGTATATGCATCATGTTGTATCAAT
GTAGCTATGCTTTTATATCTTGAATCATGAAAGTACTAGTGCCTAACAACCCATTTTTCAGTGGT
GTCAAAAATAGTGGTTTCGAGACCAAAATACCAACAAGACAGTCCATAGATATATTTAACTAATA
TTTATGAGTTAAATATAGTGTAATATTGAATCATGATTTAATAGAATTTATTAATTGGCCAGTTG
GTCAAGGTAGAAGTGGTGCGTATTAAAAGTCAAGTGGTTTCGAAAAATGAGGTTTTGAGACATCG
TTTCTGTAAATCGAGCCCGTAAATATTTTTATTAAATATTCATGAAGCTGTTATATAGGTGAATT
GAAGTTTGGTCCAAAAATTTTGATGATTTGATAGTTAATTATGAAAAAAGGACTAAACCGTAAAC
TTAGTAAAAGTTAATTGATATTGGTTTTCATTTGTTAAAAGGCTAGATTAATTAATGTTAAGTGT
TTTAAGTTGCAAATTACCCTATTTATAGCTAGTGGCCAATTAGTATATATTTATTTGAAATTTTA
TAATTTAAAATTTAATTAAATTAAGTGAAAATAATATAATAAAGTTTAAAATATAAAACAAAAGA
AATCATCATCATTGTAATGTCCGTCCTATATCCGATCCGAGCTATAAGATATGAAAAGTATAAAA
ATTTAAAATCATTCACAATTTAATAAAAAAATAACCAAAAAATTCAATTGCAATAATTTCTATGC
TATGCAATAATTTAAAATCATTC
Found at i:803400 original size:44 final size:45
Alignment explanation
Indices: 803343--803436 Score: 163
Period size: 44 Copynumber: 2.1 Consensus size: 45
803333 TTCAAGAGTA
*
803343 AGAACAACTGACTCTAGGTTGATTAATGGAAATCTCTTTCTAATT
1 AGAACAACTGACTCTAGGTTCATTAATGGAAATCTCTTTCTAATT
*
803388 AGAA-AACTGACTCTAGGTTCATTAATTGAAATCTCTTTCTAATT
1 AGAACAACTGACTCTAGGTTCATTAATGGAAATCTCTTTCTAATT
803432 AGAAC
1 AGAAC
803437 CCCTATCGTC
Statistics
Matches: 46, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
44 42 0.91
45 4 0.09
ACGTcount: A:0.35, C:0.16, G:0.14, T:0.35
Consensus pattern (45 bp):
AGAACAACTGACTCTAGGTTCATTAATGGAAATCTCTTTCTAATT
Found at i:826079 original size:22 final size:22
Alignment explanation
Indices: 826050--826099 Score: 66
Period size: 22 Copynumber: 2.3 Consensus size: 22
826040 TCTATGATTC
826050 AGGGTTTAAGGGA-TATGGGTTA
1 AGGGTTTAA-GGATTATGGGTTA
* *
826072 GGGGTTTAAGGATTATGGTTTA
1 AGGGTTTAAGGATTATGGGTTA
826094 AGGGTT
1 AGGGTT
826100 GGGGTTTAAG
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
21 3 0.12
22 21 0.88
ACGTcount: A:0.24, C:0.00, G:0.40, T:0.36
Consensus pattern (22 bp):
AGGGTTTAAGGATTATGGGTTA
Found at i:826146 original size:8 final size:7
Alignment explanation
Indices: 826073--826379 Score: 80
Period size: 7 Copynumber: 43.9 Consensus size: 7
826063 TATGGGTTAG
826073 GGGTTTA
1 GGGTTTA
* *
826080 AGGATTA
1 GGGTTTA
*
826087 TGGTTTAA
1 GGGTTT-A
*
826095 GGG-TTG
1 GGGTTTA
826101 GGGTTTA
1 GGGTTTA
*
826108 AGGTTTA
1 GGGTTTA
*
826115 GGTGTTGA
1 GG-GTTTA
* *
826123 AGGTTAA
1 GGGTTTA
826130 GGG-TTA
1 GGGTTTA
826136 GGGGTTTA
1 -GGGTTTA
826144 GGGTTTA
1 GGGTTTA
**
826151 TAGTTTA
1 GGGTTTA
**
826158 TAGTTTA
1 GGGTTTA
* *
826165 TGTTTTA
1 GGGTTTA
* * *
826172 TGATTCA
1 GGGTTTA
*
826179 AGGTTTA
1 GGGTTTA
*
826186 GGG--GA
1 GGGTTTA
*
826191 GGGATTA
1 GGGTTTA
*
826198 TGGTTT-
1 GGGTTTA
826204 GTGGTTTA
1 G-GGTTTA
*
826212 CGGTTTAA
1 GGGTTT-A
*
826220 GGG-TTG
1 GGGTTTA
826226 GGGTTTA
1 GGGTTTA
*
826233 AGGTTTA
1 GGGTTTA
826240 -GGTGTTA
1 GGGT-TTA
*
826247 GGGGTTAA
1 -GGGTTTA
*
826255 AGGTTTA
1 GGGTTTA
**
826262 TAGTTTA
1 GGGTTTA
826269 GGGTTTA
1 GGGTTTA
*
826276 GGGGTTA
1 GGGTTTA
826283 GGGTTTA
1 GGGTTTA
*
826290 AGGTTTA
1 GGGTTTA
*
826297 -GGTGGTA
1 GGGT-TTA
*
826304 GGGGTTAA
1 -GGGTTTA
* *
826312 GGG-ATG
1 GGGTTTA
826318 GGGTTTA
1 GGGTTTA
*
826325 GGGGTTA
1 GGGTTTA
**
826332 TTGTTTA
1 GGGTTTA
826339 GGGTTTAA
1 GGGTTT-A
826347 GGG-TT-
1 GGGTTTA
826352 GGTGTTTA
1 GG-GTTTA
*
826360 AGGTTTA
1 GGGTTTA
826367 GGGTCTT-
1 GGGT-TTA
826374 GGGTTT
1 GGGTTT
826380 TTAAGATAGG
Statistics
Matches: 217, Mismatches: 60, Indels: 47
0.67 0.19 0.15
Matches are distributed among these distances:
5 6 0.03
6 20 0.09
7 161 0.74
8 24 0.11
9 6 0.03
ACGTcount: A:0.19, C:0.01, G:0.39, T:0.41
Consensus pattern (7 bp):
GGGTTTA
Found at i:826148 original size:21 final size:21
Alignment explanation
Indices: 826051--826148 Score: 63
Period size: 21 Copynumber: 4.6 Consensus size: 21
826041 CTATGATTCA
* *
826051 GGGTTTAAGGGATATGGGTTAG
1 GGGTTT-AGGGTTAAGGGTTAG
* * * *
826073 GGGTTTAAGGATTATGGTTTAA
1 GGGTTT-AGGGTTAAGGGTTAG
* *
826095 GGG-TTGGGGTTTAAGGTTTAG
1 GGGTTTAGGG-TTAAGGGTTAG
* * *
826116 GTGTTGAAGGTTAAGGGTTAG
1 GGGTTTAGGGTTAAGGGTTAG
826137 GGGTTTAGGGTT
1 GGGTTTAGGGTT
826149 TATAGTTTAT
Statistics
Matches: 58, Mismatches: 16, Indels: 5
0.73 0.20 0.06
Matches are distributed among these distances:
20 2 0.03
21 32 0.55
22 24 0.41
ACGTcount: A:0.20, C:0.00, G:0.43, T:0.37
Consensus pattern (21 bp):
GGGTTTAGGGTTAAGGGTTAG
Found at i:826268 original size:36 final size:35
Alignment explanation
Indices: 826228--826296 Score: 102
Period size: 36 Copynumber: 1.9 Consensus size: 35
826218 AAGGGTTGGG
*
826228 GTTTAAGGTTTAGGTGTTAGGGGTTAAAGGTTTATA
1 GTTTAAGGTTTAGGGGTTA-GGGTTAAAGGTTTATA
* *
826264 GTTTAGGGTTTAGGGGTTAGGGTTTAAGGTTTA
1 GTTTAAGGTTTAGGGGTTAGGGTTAAAGGTTTA
826297 GGTGGTAGGG
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
35 13 0.43
36 17 0.57
ACGTcount: A:0.22, C:0.00, G:0.36, T:0.42
Consensus pattern (35 bp):
GTTTAAGGTTTAGGGGTTAGGGTTAAAGGTTTATA
Found at i:826269 original size:22 final size:22
Alignment explanation
Indices: 826213--826271 Score: 68
Period size: 22 Copynumber: 2.7 Consensus size: 22
826203 TGTGGTTTAC
* *
826213 GGTTTAAGGGTT-GGGGTTTAA
1 GGTTTAAGTGTTAGGGGTTAAA
*
826234 GGTTTAGGTGTTAGGGGTTAAA
1 GGTTTAAGTGTTAGGGGTTAAA
826256 GGTTTATAGT-TTAGGG
1 GGTTTA-AGTGTTAGGG
826272 TTTAGGGGTT
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
21 10 0.31
22 20 0.62
23 2 0.06
ACGTcount: A:0.20, C:0.00, G:0.41, T:0.39
Consensus pattern (22 bp):
GGTTTAAGTGTTAGGGGTTAAA
Found at i:828767 original size:29 final size:29
Alignment explanation
Indices: 828734--828841 Score: 127
Period size: 29 Copynumber: 3.9 Consensus size: 29
828724 GTTTATTCGG
828734 TTTAATGTGAATAAATTATCAATTTTTGA-
1 TTTAAT-TGAATAAATTATCAATTTTTGAT
*
828763 TTTAATTGAATAAA-T-T--ATGTTTGAT
1 TTTAATTGAATAAATTATCAATTTTTGAT
* *
828788 TTTAAGTGAATAAATTATCAATTTTTTAT
1 TTTAATTGAATAAATTATCAATTTTTGAT
* *
828817 TTTAATTTAATAAATTATCGATTTT
1 TTTAATTGAATAAATTATCAATTTT
828842 ATATTTGATT
Statistics
Matches: 67, Mismatches: 7, Indels: 10
0.80 0.08 0.12
Matches are distributed among these distances:
24 7 0.10
25 13 0.19
26 2 0.03
27 2 0.03
28 8 0.12
29 35 0.52
ACGTcount: A:0.37, C:0.03, G:0.08, T:0.52
Consensus pattern (29 bp):
TTTAATTGAATAAATTATCAATTTTTGAT
Found at i:828785 original size:24 final size:25
Alignment explanation
Indices: 828758--828805 Score: 80
Period size: 25 Copynumber: 2.0 Consensus size: 25
828748 ATTATCAATT
*
828758 TTTGA-TTTAATTGAATAAATTATG
1 TTTGATTTTAAGTGAATAAATTATG
828782 TTTGATTTTAAGTGAATAAATTAT
1 TTTGATTTTAAGTGAATAAATTAT
828806 CAATTTTTTA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
24 5 0.23
25 17 0.77
ACGTcount: A:0.38, C:0.00, G:0.12, T:0.50
Consensus pattern (25 bp):
TTTGATTTTAAGTGAATAAATTATG
Found at i:832140 original size:122 final size:123
Alignment explanation
Indices: 831909--832156 Score: 480
Period size: 122 Copynumber: 2.0 Consensus size: 123
831899 ACCTTATTGG
831909 GGATCTTCATTCATAATCTGGTTGAAGACAGAAGTTGGATACATTTCTTAGAATGTTATACATAC
1 GGATCTTCATTCA-AATCTGGTTGAAGACAGAAGTTGGATACATTTCTTAGAATGTTATACATAC
831974 CGATTCTTAGACTGTCTTTGGCGATTGTCAAAATGCTGGTCACCTCGTATCTTCAAGTC
65 CGATTCTTAGACTGTCTTTGGCGATTGTCAAAATGCTGGTCACCTCGTATCTTCAAGTC
832033 GGATCTTCATTC-AATCTGGTTGAAGACAGAAGTTGGATACATTTCTTAGAATGTTATACATACC
1 GGATCTTCATTCAAATCTGGTTGAAGACAGAAGTTGGATACATTTCTTAGAATGTTATACATACC
832097 GATTCTTAGACTGTCTTTGGCGATTGTCAAAATGCTGGTCACCTCGTATCTTCAAGTC
66 GATTCTTAGACTGTCTTTGGCGATTGTCAAAATGCTGGTCACCTCGTATCTTCAAGTC
832155 GG
1 GG
832157 TCCAGACAAC
Statistics
Matches: 124, Mismatches: 0, Indels: 2
0.98 0.00 0.02
Matches are distributed among these distances:
122 112 0.90
124 12 0.10
ACGTcount: A:0.26, C:0.19, G:0.20, T:0.35
Consensus pattern (123 bp):
GGATCTTCATTCAAATCTGGTTGAAGACAGAAGTTGGATACATTTCTTAGAATGTTATACATACC
GATTCTTAGACTGTCTTTGGCGATTGTCAAAATGCTGGTCACCTCGTATCTTCAAGTC
Found at i:871291 original size:19 final size:19
Alignment explanation
Indices: 871269--871321 Score: 61
Period size: 19 Copynumber: 2.7 Consensus size: 19
871259 TGCAAAATGT
871269 AAATATTAAATTAAAACAA
1 AAATATTAAATTAAAACAA
* * *
871288 AAATATAAAAATAAAATAA
1 AAATATTAAATTAAAACAA
*
871307 AAATGTCTAAATTAA
1 AAATAT-TAAATTAA
871322 TAGAAATAAA
Statistics
Matches: 27, Mismatches: 6, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
19 21 0.78
20 6 0.22
ACGTcount: A:0.68, C:0.04, G:0.02, T:0.26
Consensus pattern (19 bp):
AAATATTAAATTAAAACAA
Found at i:871304 original size:25 final size:25
Alignment explanation
Indices: 871262--871309 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 25
871252 AAGAAAATGC
* * * *
871262 AAAATGTAAATATTAAATTAAAACA
1 AAAATATAAAAATAAAATAAAAACA
871287 AAAATATAAAAATAAAATAAAAA
1 AAAATATAAAAATAAAATAAAAA
871310 TGTCTAAATT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 19 1.00
ACGTcount: A:0.73, C:0.02, G:0.02, T:0.23
Consensus pattern (25 bp):
AAAATATAAAAATAAAATAAAAACA
Found at i:872653 original size:31 final size:31
Alignment explanation
Indices: 872617--872681 Score: 78
Period size: 31 Copynumber: 2.1 Consensus size: 31
872607 TAGATATATA
*
872617 TTATTTCTAAAATATAAAAA-AATTTTAAAAT
1 TTATTTCTAAAAT-TAAAAACAATTTAAAAAT
* * *
872648 TTATTTTTCAAATTAAAAACTATTTAAAAAT
1 TTATTTCTAAAATTAAAAACAATTTAAAAAT
872679 TTA
1 TTA
872682 GTTTTCATAA
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
30 6 0.21
31 23 0.79
ACGTcount: A:0.51, C:0.05, G:0.00, T:0.45
Consensus pattern (31 bp):
TTATTTCTAAAATTAAAAACAATTTAAAAAT
Found at i:873094 original size:43 final size:43
Alignment explanation
Indices: 873030--873112 Score: 112
Period size: 43 Copynumber: 1.9 Consensus size: 43
873020 CCATATTTCT
** * **
873030 AGACCGTGTACAATTTGAAATAGGGTTACACGGCCATGTCGCC
1 AGACCGTGTACAATTCAAAATAGGGTCACACAACCATGTCGCC
*
873073 AGACCGTGTGCAATTCAAAATAGGGTCACACAACCATGTC
1 AGACCGTGTACAATTCAAAATAGGGTCACACAACCATGTC
873113 TCTGAACATG
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
43 34 1.00
ACGTcount: A:0.31, C:0.24, G:0.23, T:0.22
Consensus pattern (43 bp):
AGACCGTGTACAATTCAAAATAGGGTCACACAACCATGTCGCC
Found at i:874209 original size:45 final size:45
Alignment explanation
Indices: 873955--874272 Score: 289
Period size: 45 Copynumber: 7.0 Consensus size: 45
873945 TGTCAAAGGA
* * * * *
873955 TGCCATAGCGTCTTTCAGCTATGGTCATAGTTC-TAATT-ATAATGA
1 TGCCATAGCGTCTTTCAGCTATGGTCTTA-CTCAT-TTTAATCATGT
* * * * * *** * *
874000 TGCCATTGCGTCTTTCAACCATGGTCTTACTAACTTCCTTTATGA
1 TGCCATAGCGTCTTTCAGCTATGGTCTTACTCATTTTAATCATGT
* *
874045 TGCCATAGCATCTTTTAGCTATGGTCTTACTCATTTTAATTCATGT
1 TGCCATAGCGTCTTTCAGCTATGGTCTTACTCATTTTAA-TCATGT
* * *
874091 TGCCATAACATCTTTCAGCTATGGTCTTACTCATTTTAATTCTTGT
1 TGCCATAGCGTCTTTCAGCTATGGTCTTACTCATTTTAA-TCATGT
* * * *
874137 TACCATAACGTCTTTCAGCTATAGTCTTACTCAATTTAATCATGT
1 TGCCATAGCGTCTTTCAGCTATGGTCTTACTCATTTTAATCATGT
* * * * *
874182 TGCCATAGCGTCTTCCAACTATGGTCTTACTCGTTTTAACCATAT
1 TGCCATAGCGTCTTTCAGCTATGGTCTTACTCATTTTAATCATGT
* ** *
874227 TGCCATAGTGTCTTTCAGCTATATTCTTACCCATTTTAATCATGT
1 TGCCATAGCGTCTTTCAGCTATGGTCTTACTCATTTTAATCATGT
874272 T
1 T
874273 TACGATAACA
Statistics
Matches: 221, Mismatches: 49, Indels: 6
0.80 0.18 0.02
Matches are distributed among these distances:
44 2 0.01
45 137 0.62
46 82 0.37
ACGTcount: A:0.23, C:0.22, G:0.13, T:0.42
Consensus pattern (45 bp):
TGCCATAGCGTCTTTCAGCTATGGTCTTACTCATTTTAATCATGT
Found at i:880894 original size:46 final size:45
Alignment explanation
Indices: 880813--880955 Score: 169
Period size: 45 Copynumber: 3.2 Consensus size: 45
880803 TTAGCCATTA
* * * * *
880813 TCTTACTTAATTTCATCATGATGCCATAGCATCTTTCAACTATAG
1 TCTTACTTATTTTAATCATGTTGCCATAACGTCTTTCAACTATAG
*
880858 TCTTACTTATTTTAATTCATGTTGCCATAACGTCTTTCAACTGTAG
1 TCTTACTTATTTTAA-TCATGTTGCCATAACGTCTTTCAACTATAG
* * * * * *
880904 TCTTACTTGTTTTAATCATGTTTCCATAATGTTTTTCAGCTATGG
1 TCTTACTTATTTTAATCATGTTGCCATAACGTCTTTCAACTATAG
880949 TCTTACT
1 TCTTACT
880956 CGTTTTACTC
Statistics
Matches: 84, Mismatches: 13, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
45 44 0.52
46 40 0.48
ACGTcount: A:0.24, C:0.20, G:0.10, T:0.46
Consensus pattern (45 bp):
TCTTACTTATTTTAATCATGTTGCCATAACGTCTTTCAACTATAG
Found at i:880960 original size:23 final size:23
Alignment explanation
Indices: 880934--881006 Score: 62
Period size: 23 Copynumber: 3.2 Consensus size: 23
880924 TTTCCATAAT
880934 GTTTTTCAGCTATGGTCTTACTC
1 GTTTTTCAGCTATGGTCTTACTC
* *
880957 GTTTTACTCA--TATTGTCATA-TC
1 GTTTT--TCAGCTATGGTCTTACTC
* * *
880979 ATTTTTCAGCTTTGGTGTTACTC
1 GTTTTTCAGCTATGGTCTTACTC
881002 GTTTT
1 GTTTT
881007 AATCTTGTTT
Statistics
Matches: 37, Mismatches: 8, Indels: 10
0.67 0.15 0.18
Matches are distributed among these distances:
20 3 0.08
22 12 0.32
23 19 0.51
25 3 0.08
ACGTcount: A:0.15, C:0.18, G:0.15, T:0.52
Consensus pattern (23 bp):
GTTTTTCAGCTATGGTCTTACTC
Found at i:880961 original size:45 final size:45
Alignment explanation
Indices: 880846--881016 Score: 148
Period size: 45 Copynumber: 3.8 Consensus size: 45
880836 CCATAGCATC
** * * *
880846 TTTCAACTATAGTCTTACTTATTTTAATTCATGTTGCCATAACGTC
1 TTTCAACTATAGTCTTACTCGTTTTAA-TCATGTTTCCATAATGTT
* *
880892 TTTCAACTGTAGTCTTACTTGTTTTAATCATGTTTCCATAATGTT
1 TTTCAACTATAGTCTTACTCGTTTTAATCATGTTTCCATAATGTT
* * * * *
880937 TTTCAGCTATGGTCTTACTCGTTTTACTCATATTGT-CAT-ATCATT
1 TTTCAACTATAGTCTTACTCGTTTTAATCATGTT-TCCATAAT-GTT
* * * * *
880982 TTTCAGCTTTGGTGTTACTCGTTTTAATCTTGTTT
1 TTTCAACTATAGTCTTACTCGTTTTAATCATGTTT
881017 ACGATAACAT
Statistics
Matches: 106, Mismatches: 17, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
44 3 0.03
45 77 0.73
46 26 0.25
ACGTcount: A:0.20, C:0.18, G:0.12, T:0.50
Consensus pattern (45 bp):
TTTCAACTATAGTCTTACTCGTTTTAATCATGTTTCCATAATGTT
Done.