Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold2614

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 538

Length: 897
ACGTcount: A:0.47, C:0.06, G:0.15, T:0.32


Found at i:527 original size:3 final size:3

Alignment explanation


    Indices: 521--549  Score: 58
    Period size: 3  Copynumber: 9.7  Consensus size: 3

        511 GATAAGTAAC

                                                  
        521 AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
          1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AA

        550 CAAAATTACT


Statistics
Matches: 26,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   26  1.00

ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31


Consensus pattern (3 bp):   
AAT

Found at i:811 original size:14 final size:15

Alignment explanation


    Indices: 786--814  Score: 51
    Period size: 14  Copynumber: 2.0  Consensus size: 15

        776 AGTAAGATGA

                           
        786 AAAATATATACATAT
          1 AAAATATATACATAT

                           
        801 AAAAT-TATACATAT
          1 AAAATATATACATAT

        815 TTTAATACGT


Statistics
Matches: 14,  Mismatches: 0, Indels: 1
        0.93            0.00        0.07

Matches are distributed among these distances:
  14    9  0.64
  15    5  0.36

ACGTcount: A:0.59, C:0.07, G:0.00, T:0.34


Consensus pattern (15 bp):   
AAAATATATACATAT
Done.