Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold2862

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 499

Length: 833
ACGTcount: A:0.37, C:0.15, G:0.11, T:0.36


Found at i:11 original size:6 final size:6

Alignment explanation


    Indices: 1--53  Score: 70
    Period size: 6  Copynumber: 8.8  Consensus size: 6

                                               *      *      *     
          1 TAATTC TAATTC TAATTC TAATTC TAATTC CAATTC CAATTC CAATTC
          1 TAATTC TAATTC TAATTC TAATTC TAATTC TAATTC TAATTC TAATTC

            *    
         49 CAATT
          1 TAATT

         54 TGAGTTTGAA


Statistics
Matches: 46,  Mismatches: 1, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
   6   46  1.00

ACGTcount: A:0.34, C:0.23, G:0.00, T:0.43


Consensus pattern (6 bp):   
TAATTC

Found at i:24 original size:18 final size:18

Alignment explanation


    Indices: 1--53  Score: 79
    Period size: 18  Copynumber: 2.9  Consensus size: 18

                        *     
          1 TAATTCTAATTCTAATTC
          1 TAATTCTAATTCCAATTC

                              
         19 TAATTCTAATTCCAATTC
          1 TAATTCTAATTCCAATTC

            *     *          
         37 CAATTCCAATTCCAATT
          1 TAATTCTAATTCCAATT

         54 TGAGTTTGAA


Statistics
Matches: 32,  Mismatches: 3, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
  18   32  1.00

ACGTcount: A:0.34, C:0.23, G:0.00, T:0.43


Consensus pattern (18 bp):   
TAATTCTAATTCCAATTC
Done.