genome.fa.s1440.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold424
Parameters: 2 7 7 80 10 50 1000
Length:  270792

Tables:   1   

This is table  1  of  1  ( 93 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
953--985	15	2.3	15	89	5	50	51	0	12	36	1.39
1027--1063	17	2.2	17	90	0	56	51	5	2	40	1.39
1151--1218	30	2.3	29	82	7	75	72	5	2	19	1.19
1628--1666	15	2.6	15	95	0	69	51	17	0	30	1.46
4043--4085	21	2.0	22	86	4	61	55	23	13	6	1.62
5243--5665	51	8.8	50	77	12	388	30	17	16	35	1.93
5238--5713	96	5.0	95	86	1	621	29	17	16	35	1.92
5243--5842	44	12.9	45	75	12	435	30	17	16	35	1.93
5238--5713	191	2.5	191	90	1	740	29	17	16	35	1.92
15729--15765	17	2.2	17	90	0	56	51	5	2	40	1.39
15871--15930	30	2.0	29	87	9	86	75	3	1	20	1.04
16007--16041	12	2.9	12	86	0	52	71	5	2	20	1.19
15976--16258	141	2.0	142	98	0	550	51	4	14	29	1.61
16148--16182	12	2.9	12	86	0	52	71	5	2	20	1.19
16631--16662	9	3.6	9	95	0	55	90	0	3	6	0.53
18949--19010	29	2.1	30	82	8	74	48	0	3	48	1.17
18961--19020	30	2.1	28	81	6	66	50	0	1	48	1.11
22063--22653	44	13.1	44	75	9	168	29	19	17	33	1.95
21898--22438	233	2.3	233	85	2	737	30	20	16	32	1.95
22062--22653	88	6.6	88	75	8	474	29	19	17	33	1.95
22320--22693	132	2.8	131	82	5	432	29	19	17	32	1.95
34161--34201	19	2.0	21	86	9	59	51	9	0	39	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34214--34251	20	1.9	20	84	10	51	65	5	5	23	1.34
34385--34442	29	2.0	30	82	3	73	60	12	6	20	1.54
38535--38592	11	5.1	11	74	13	55	74	0	8	17	1.06
40016--40469	94	4.8	95	81	6	480	30	19	18	31	1.96
40015--40418	186	2.2	187	82	6	471	30	19	18	31	1.96
65582--65618	2	18.5	2	100	0	74	0	0	51	48	1.00
65923--65950	6	4.7	6	100	0	56	14	0	0	85	0.59
68289--68327	11	3.5	11	82	6	51	64	5	2	28	1.28
68607--68689	11	7.2	11	71	12	51	67	2	6	24	1.25
82571--82630	20	3.2	19	75	15	61	58	0	5	36	1.20
82706--82731	2	13.0	2	100	0	52	50	0	0	50	1.00
83599--83630	5	6.8	5	92	7	50	81	0	0	18	0.70
89753--89928	87	2.0	88	98	1	345	37	25	15	21	1.93
96123--96158	6	5.7	6	87	12	54	16	5	0	77	0.94
99496--99534	19	2.1	19	90	0	60	30	0	15	53	1.42
107107--107258	3	50.7	3	100	0	304	66	0	0	33	0.92
107906--107942	15	2.5	14	87	12	56	16	8	0	75	1.02
108234--108266	17	1.9	17	100	0	66	66	3	0	30	1.06
108245--108287	21	2.0	21	81	0	50	58	6	0	34	1.25
110506--111043	44	12.1	44	74	5	355	33	17	19	29	1.95
110451--111066	88	6.9	89	73	6	379	32	17	19	29	1.95
110556--111043	132	3.7	131	76	5	431	33	17	19	29	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
113054--113093	12	3.5	11	84	15	55	22	5	0	72	1.04
114060--114096	19	1.9	19	88	0	56	59	0	8	32	1.27
120500--120524	13	1.9	13	100	0	50	32	0	0	68	0.90
121137--121163	2	13.5	2	100	0	54	48	0	0	51	1.00
124182--124305	50	2.5	50	77	6	126	30	18	19	31	1.96
124283--125263	89	10.8	90	76	9	715	30	21	15	33	1.94
124432--125213	184	4.3	183	77	9	468	30	20	14	34	1.93
124337--125223	140	6.5	133	75	9	531	30	20	15	33	1.94
124177--125263	44	23.7	47	73	11	568	30	20	15	33	1.94
128828--128928	33	3.1	33	94	0	184	15	24	12	46	1.81
133284--133326	19	2.2	20	87	4	61	44	6	18	30	1.76
135479--135522	23	1.9	23	86	9	63	75	2	2	20	1.03
135519--137077	66	23.6	66	100	0	3118	47	5	3	43	1.43
141214--141487	131	2.1	132	99	0	541	43	4	12	40	1.62
144524--144574	21	2.4	21	90	3	75	25	0	5	68	1.12
147328--147368	6	6.8	6	97	0	73	53	0	12	34	1.38
150547--150911	46	8.0	46	78	7	278	33	4	23	38	1.75
150573--150903	23	14.4	23	72	10	212	32	4	23	38	1.75
150817--150925	46	2.4	46	85	3	139	33	7	23	35	1.83
153570--154385	44	18.7	42	71	12	383	26	22	20	29	1.99
153558--154341	217	3.6	217	87	2	1022	26	22	20	29	1.98
153563--154385	89	9.4	88	69	14	418	26	22	20	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
153829--154387	261	2.1	258	85	5	734	27	22	20	28	1.99
178765--178796	15	2.2	15	94	5	57	50	0	0	50	1.00
197751--197810	16	3.8	16	78	8	59	70	0	5	25	1.08
199452--199610	45	3.6	45	78	5	180	27	25	15	30	1.96
199620--199871	132	1.9	132	85	1	353	28	23	17	29	1.97
199854--200521	50	13.4	50	70	3	448	25	24	19	30	1.98
199854--200540	100	6.9	100	93	0	1054	26	23	19	29	1.98
199854--200540	299	2.3	300	92	1	1135	26	23	19	29	1.98
201783--201824	7	6.0	7	79	20	52	11	16	0	71	1.14
201783--201824	21	2.0	21	90	9	68	11	16	0	71	1.14
211701--211868	86	2.0	84	89	4	257	46	9	5	38	1.61
212354--212405	22	2.3	20	76	20	50	55	7	0	36	1.29
213087--213163	31	2.5	31	91	4	120	45	9	16	28	1.78
213334--213376	15	2.8	15	80	16	52	46	2	2	48	1.27
213458--213935	238	2.0	239	99	0	949	39	11	12	35	1.80
218235--218324	39	2.4	37	74	18	94	33	1	0	65	1.00
220687--220745	31	1.9	31	89	6	93	52	10	10	27	1.67
225648--225673	9	2.9	9	100	0	52	80	7	11	0	0.89
225645--225694	15	3.3	15	78	10	57	76	4	18	2	1.04
225644--225695	9	5.4	9	80	13	50	73	3	21	1	1.10
230289--230327	20	2.0	20	85	10	53	61	5	0	33	1.18
230929--231088	85	1.9	85	84	0	212	38	16	16	28	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
233263--233315	26	2.0	26	89	7	81	47	1	0	50	1.12
241333--241400	31	2.2	31	89	0	100	42	4	14	38	1.66
245068--245100	17	1.9	17	93	0	57	60	0	0	39	0.97
252239--252293	28	2.0	28	92	0	92	27	25	20	27	1.99
262843--262897	25	2.2	25	96	0	101	34	0	9	56	1.31

Tables:   1

The End!