Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold3233

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 468

Length: 780
ACGTcount: A:0.46, C:0.05, G:0.19, T:0.31


Found at i:20 original size:8 final size:8

Alignment explanation


    Indices: 9--40  Score: 55
    Period size: 8  Copynumber: 4.0  Consensus size: 8

          1 TGTTATTA

                    
          9 TATTATAT
          1 TATTATAT

                   *
         17 TATTATAA
          1 TATTATAT

                    
         25 TATTATAT
          1 TATTATAT

                    
         33 TATTATAT
          1 TATTATAT

         41 ATATATAACA


Statistics
Matches: 22,  Mismatches: 2, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
   8   22  1.00

ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59


Consensus pattern (8 bp):   
TATTATAT

Found at i:27 original size:16 final size:16

Alignment explanation


    Indices: 3--44  Score: 66
    Period size: 16  Copynumber: 2.6  Consensus size: 16

          1 TG

                *           
          3 TTATTATATTATATTA
          1 TTATAATATTATATTA

                            
         19 TTATAATATTATATTA
          1 TTATAATATTATATTA

                      
         35 TTATATATAT
          1 TTATA-ATAT

         45 ATAACAAAAG


Statistics
Matches: 24,  Mismatches: 1, Indels: 1
        0.92            0.04        0.04

Matches are distributed among these distances:
  16   20  0.83
  17    4  0.17

ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60


Consensus pattern (16 bp):   
TTATAATATTATATTA

Done.