Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: scaffold23
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 3824748
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 177433 characters in sequence are not A, C, G, or T
File 6 of 14
Found at i:1381468 original size:27 final size:27
Alignment explanation
Indices: 1381367--1381469 Score: 82
Period size: 27 Copynumber: 3.5 Consensus size: 27
1381357 GTTTTTTTAT
*
1381367 ATATTTTGGTAAAT-AAAAAAATTATA
1 ATATTTTGGTAAATAAAAAAAATTGTA
1381393 TATATTTTGGTAAATAAAAAAAAGTTATAAGTTGTA
1 -ATATTTTGGTAAAT---AAAAA---A-AA-TTGTA
* **
1381429 CTATTTTAATAAATAAAAAAAATTGTA
1 ATATTTTGGTAAATAAAAAAAATTGTA
1381456 ATATTTTGGTAAAT
1 ATATTTTGGTAAAT
1381470 TTTTATTTTT
Statistics
Matches: 60, Mismatches: 7, Indels: 18
0.71 0.08 0.21
Matches are distributed among these distances:
27 30 0.50
28 2 0.03
29 1 0.02
31 4 0.07
32 5 0.08
34 1 0.02
35 13 0.22
36 4 0.07
ACGTcount: A:0.50, C:0.01, G:0.10, T:0.40
Consensus pattern (27 bp):
ATATTTTGGTAAATAAAAAAAATTGTA
Found at i:1384131 original size:18 final size:19
Alignment explanation
Indices: 1384108--1384147 Score: 73
Period size: 19 Copynumber: 2.2 Consensus size: 19
1384098 TATAAGCCAC
1384108 ATGAGATTTT-TTAAAGAA
1 ATGAGATTTTCTTAAAGAA
1384126 ATGAGATTTTCTTAAAGAA
1 ATGAGATTTTCTTAAAGAA
1384145 ATG
1 ATG
1384148 TCATATAATC
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 10 0.48
19 11 0.52
ACGTcount: A:0.42, C:0.03, G:0.17, T:0.38
Consensus pattern (19 bp):
ATGAGATTTTCTTAAAGAA
Found at i:1385591 original size:11 final size:11
Alignment explanation
Indices: 1385575--1385617 Score: 51
Period size: 11 Copynumber: 4.4 Consensus size: 11
1385565 AAAGTTAGAC
1385575 TTTATAATTAA
1 TTTATAATTAA
1385586 TTTATAATT--
1 TTTATAATTAA
1385595 TTT-TAA--AA
1 TTTATAATTAA
1385603 TTTATAATTAA
1 TTTATAATTAA
1385614 TTTA
1 TTTA
1385618 ATTAAGAAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 10
0.73 0.00 0.27
Matches are distributed among these distances:
8 6 0.22
9 6 0.22
11 15 0.56
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (11 bp):
TTTATAATTAA
Found at i:1385794 original size:40 final size:42
Alignment explanation
Indices: 1385739--1385819 Score: 112
Period size: 40 Copynumber: 2.0 Consensus size: 42
1385729 ACAAACGGGG
** *
1385739 AAAGTGCTTCCTCAAGGAAGCG-CTT-TGTCCACGTGGACAC
1 AAAGTGCGCCCTCAAGGAAGCGTCTTCTGTCCACGTAGACAC
*
1385779 AAAGTGCGCCCTCAAGGAAGCGTTTTCTGTCCACGTAGACA
1 AAAGTGCGCCCTCAAGGAAGCGTCTTCTGTCCACGTAGACA
1385820 AAGCGCTTCC
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
40 20 0.57
41 2 0.06
42 13 0.37
ACGTcount: A:0.26, C:0.27, G:0.25, T:0.22
Consensus pattern (42 bp):
AAAGTGCGCCCTCAAGGAAGCGTCTTCTGTCCACGTAGACAC
Found at i:1387672 original size:39 final size:39
Alignment explanation
Indices: 1387609--1387743 Score: 135
Period size: 40 Copynumber: 3.4 Consensus size: 39
1387599 GCGTTATACT
* * *
1387609 TTCTATTTGGCGTGATTCGGGTGGATCAGCTCTTACGAGC
1 TTCTA-TTGGTGTGTTTCGGGTGGATCAGCTCTTATGAGC
* *
1387649 TTCTATTGGTGTGTTTTGGGTGGACCAGCTCTTATGAGC
1 TTCTATTGGTGTGTTTCGGGTGGATCAGCTCTTATGAGC
* * *** *
1387688 TTCTGTTTGGTGTATTTCAATTGGATAAGCTCTTATGAGC
1 TTCT-ATTGGTGTGTTTCGGGTGGATCAGCTCTTATGAGC
*
1387728 TTCTGTCTGGTGTGTT
1 TTCTAT-TGGTGTGTT
1387744 CGGTCTATTT
Statistics
Matches: 78, Mismatches: 15, Indels: 4
0.80 0.15 0.04
Matches are distributed among these distances:
39 34 0.44
40 44 0.56
ACGTcount: A:0.14, C:0.16, G:0.28, T:0.42
Consensus pattern (39 bp):
TTCTATTGGTGTGTTTCGGGTGGATCAGCTCTTATGAGC
Found at i:1388011 original size:40 final size:39
Alignment explanation
Indices: 1387964--1388073 Score: 114
Period size: 40 Copynumber: 2.8 Consensus size: 39
1387954 GCGTTTGAAT
1387964 AAAAAATGCCGCTAAAAATCGAGCATTAGCGACGCATTGC
1 AAAAAATGCCGCTAAAAATCGAGCATTAGCGACG-ATTGC
** ** * * * *
1388004 GTAAAATGCTACTAAAGATCGAGCATTAGCGGCGTTTTC
1 AAAAAATGCCGCTAAAAATCGAGCATTAGCGACGATTGC
*
1388043 AAAAAAGAGCCGCTAAAAAT-GAGCATTAGCG
1 AAAAAA-TGCCGCTAAAAATCGAGCATTAGCG
1388074 GCGTTTTTTG
Statistics
Matches: 55, Mismatches: 14, Indels: 3
0.76 0.19 0.04
Matches are distributed among these distances:
39 18 0.33
40 37 0.67
ACGTcount: A:0.39, C:0.19, G:0.22, T:0.20
Consensus pattern (39 bp):
AAAAAATGCCGCTAAAAATCGAGCATTAGCGACGATTGC
Found at i:1388101 original size:40 final size:39
Alignment explanation
Indices: 1388024--1388101 Score: 104
Period size: 39 Copynumber: 2.0 Consensus size: 39
1388014 ACTAAAGATC
* *
1388024 GAGCATTAGCGGCGTTTTCAAAAAAGAGCCGCTAAAAAT
1 GAGCATTAGCGGCGTTTTCAAAAAACAGCCGCAAAAAAT
*
1388063 GAGCATTAGCGGCGTTTTTTGAAAAAACA-CCGCAAAAAA
1 GAGCATTAGCGGCG--TTTTCAAAAAACAGCCGCAAAAAA
1388102 CCTAAGCCCA
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
39 14 0.41
40 9 0.26
41 11 0.32
ACGTcount: A:0.40, C:0.18, G:0.22, T:0.21
Consensus pattern (39 bp):
GAGCATTAGCGGCGTTTTCAAAAAACAGCCGCAAAAAAT
Found at i:1402178 original size:45 final size:45
Alignment explanation
Indices: 1402092--1402257 Score: 217
Period size: 45 Copynumber: 3.7 Consensus size: 45
1402082 CAGAGGATTC
* * * *
1402092 CATAGAGTCTTTCAGCTATTGTCTTAGTCCTTTTTACCATGATGT
1 CATAGAGTCTTTCAGCTATGGTCTTACTCATTTTTATCATGATGT
* ** *
1402137 CATAGAGTCTTTCAGCTATGGTATTACTCATTTTCGTCATGATGC
1 CATAGAGTCTTTCAGCTATGGTCTTACTCATTTTTATCATGATGT
** *
1402182 CATATTGTCTTTCAGCTATGGTCTTACTCATTTTTATCATGACGT
1 CATAGAGTCTTTCAGCTATGGTCTTACTCATTTTTATCATGATGT
1402227 CATAGCA-TCTTTCAGCTATGGTCTTACTCAT
1 CATAG-AGTCTTTCAGCTATGGTCTTACTCAT
1402258 CTTGGCGTAT
Statistics
Matches: 103, Mismatches: 17, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
45 103 1.00
ACGTcount: A:0.21, C:0.21, G:0.15, T:0.43
Consensus pattern (45 bp):
CATAGAGTCTTTCAGCTATGGTCTTACTCATTTTTATCATGATGT
Found at i:1410900 original size:21 final size:20
Alignment explanation
Indices: 1410871--1410912 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 20
1410861 ACAAACACAC
*
1410871 ACCATAATCTCAT-TTTATAAA
1 ACCAAAATC-CATATTTA-AAA
1410892 ACCAAAATCCATATTTAAAA
1 ACCAAAATCCATATTTAAAA
1410912 A
1 A
1410913 TAAAAAATTT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
20 7 0.37
21 12 0.63
ACGTcount: A:0.50, C:0.19, G:0.00, T:0.31
Consensus pattern (20 bp):
ACCAAAATCCATATTTAAAA
Found at i:1414262 original size:109 final size:109
Alignment explanation
Indices: 1413921--1414326 Score: 706
Period size: 109 Copynumber: 3.7 Consensus size: 109
1413911 TATTTTGGCA
1413921 ATTTGGTTTAATC-AGAAAAATCGACACCCAGCACCTTAGGGCATGTTTTCTCGAATTTCCAAAC
1 ATTTGGTTTAA-CGAGAAAAATCGACACCCAGCACCTTAGGGCATGTTTTCTCGAATTTCCAAAC
*
1413985 GCAAAACATTGCCTTATTTTGAAATTTTTAAAAGGATATTAAGCC
65 GCAAAACATTGCCTTATTTTAAAATTTTTAAAAGGATATTAAGCC
1414030 ATTTGGTTTAACGAGAAAAATCGACACCCAGCACCTTAGGGCATGTTTTCTCGAATTTCCCAAAC
1 ATTTGGTTTAACGAGAAAAATCGACACCCAGCACCTTAGGGCATGTTTTCTCGAATTT-CCAAAC
*
1414095 GCAAAACATTGCCTTATTTTAAAATTTTTAAAATGATATTAAGCC
65 GCAAAACATTGCCTTATTTTAAAATTTTTAAAAGGATATTAAGCC
* * * * *
1414140 ATTTGGTTGAACGAGAAAAATTGACACCCAACACCTTAGGGCATATTTTCTCGAATTTCTAAACG
1 ATTTGGTTTAACGAGAAAAATCGACACCCAGCACCTTAGGGCATGTTTTCTCGAATTTCCAAACG
*
1414205 CAAAACATTGCCTTATTTTAAAATCTTTAAAAGGATATTAAGCC
66 CAAAACATTGCCTTATTTTAAAATTTTTAAAAGGATATTAAGCC
1414249 ATTTGGTTTAACGAGAAAAATCGACACCCAGCACCTTAGGGCATGTTTTCTCGAATTTCCAAACG
1 ATTTGGTTTAACGAGAAAAATCGACACCCAGCACCTTAGGGCATGTTTTCTCGAATTTCCAAACG
*
1414314 CAAAATATTGCCT
66 CAAAACATTGCCT
1414327 CAATTTGAAA
Statistics
Matches: 280, Mismatches: 15, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
108 1 0.00
109 176 0.63
110 103 0.37
ACGTcount: A:0.34, C:0.20, G:0.15, T:0.31
Consensus pattern (109 bp):
ATTTGGTTTAACGAGAAAAATCGACACCCAGCACCTTAGGGCATGTTTTCTCGAATTTCCAAACG
CAAAACATTGCCTTATTTTAAAATTTTTAAAAGGATATTAAGCC
Found at i:1414300 original size:219 final size:218
Alignment explanation
Indices: 1413921--1414326 Score: 715
Period size: 219 Copynumber: 1.9 Consensus size: 218
1413911 TATTTTGGCA
* * *
1413921 ATTTGGTTTAATCAGAAAAATCGACACCCAGCACCTTAGGGCATGTTTTCTCGAATTTCCAAACG
1 ATTTGGTTGAATCAGAAAAATCGACACCCAACACCTTAGGGCATATTTTCTCGAATTTCCAAACG
* *
1413986 CAAAACATTGCCTTATTTTGAAATTTTTAAAAGGATATTAAGCCATTTGGTTTAACGAGAAAAAT
66 CAAAACATTGCCTTATTTTAAAATCTTTAAAAGGATATTAAGCCATTTGGTTTAACGAGAAAAAT
1414051 CGACACCCAGCACCTTAGGGCATGTTTTCTCGAATTTCCCAAACGCAAAACATTGCCTTATTTTA
131 CGACACCCAGCACCTTAGGGCATGTTTTCTCGAATTT-CCAAACGCAAAACATTGCCTTATTTTA
1414116 AAATTTTTAAAATGATATTAAGCC
195 AAATTTTTAAAATGATATTAAGCC
* *
1414140 ATTTGGTTGAA-CGAGAAAAATTGACACCCAACACCTTAGGGCATATTTTCTCGAATTTCTAAAC
1 ATTTGGTTGAATC-AGAAAAATCGACACCCAACACCTTAGGGCATATTTTCTCGAATTTCCAAAC
1414204 GCAAAACATTGCCTTATTTTAAAATCTTTAAAAGGATATTAAGCCATTTGGTTTAACGAGAAAAA
65 GCAAAACATTGCCTTATTTTAAAATCTTTAAAAGGATATTAAGCCATTTGGTTTAACGAGAAAAA
*
1414269 TCGACACCCAGCACCTTAGGGCATGTTTTCTCGAATTTCCAAACGCAAAATATTGCCT
130 TCGACACCCAGCACCTTAGGGCATGTTTTCTCGAATTTCCAAACGCAAAACATTGCCT
1414327 CAATTTGAAA
Statistics
Matches: 178, Mismatches: 8, Indels: 3
0.94 0.04 0.02
Matches are distributed among these distances:
218 20 0.11
219 158 0.89
ACGTcount: A:0.34, C:0.20, G:0.15, T:0.31
Consensus pattern (218 bp):
ATTTGGTTGAATCAGAAAAATCGACACCCAACACCTTAGGGCATATTTTCTCGAATTTCCAAACG
CAAAACATTGCCTTATTTTAAAATCTTTAAAAGGATATTAAGCCATTTGGTTTAACGAGAAAAAT
CGACACCCAGCACCTTAGGGCATGTTTTCTCGAATTTCCAAACGCAAAACATTGCCTTATTTTAA
AATTTTTAAAATGATATTAAGCC
Found at i:1414461 original size:4 final size:4
Alignment explanation
Indices: 1414452--1414512 Score: 56
Period size: 4 Copynumber: 16.0 Consensus size: 4
1414442 ATACCATAGC
* ** *
1414452 AAAT AAAT AAAT AAAT AAAT AAAT AAA- ACAT -AA- AAAT GGAT ATAT
1 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT
*
1414497 AAAT AAAT ACAT AAAT
1 AAAT AAAT AAAT AAAT
1414513 GAACATAAAA
Statistics
Matches: 45, Mismatches: 9, Indels: 6
0.75 0.15 0.10
Matches are distributed among these distances:
3 5 0.11
4 40 0.89
ACGTcount: A:0.69, C:0.03, G:0.03, T:0.25
Consensus pattern (4 bp):
AAAT
Found at i:1414669 original size:3 final size:3
Alignment explanation
Indices: 1414661--1414695 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
1414651 ATATAAAAGC
1414661 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1414696 CACTAAAATA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:1415890 original size:100 final size:99
Alignment explanation
Indices: 1415540--1416162 Score: 851
Period size: 99 Copynumber: 6.3 Consensus size: 99
1415530 ACCGAAGAAA
* * * * * ** *
1415540 TAAGATTCGCCGTTGCGGCTTCAATC-TTT-AGTTGTAATGTCGGGAAAGCAAGATTCGCCATCG
1 TAAGATTCGCCGTTGTGGCTTCGATCTTTTGAATTGCAATGTCGGGGAAGTGAGATTCACCATCG
1415603 TAGCTTCAATCTGTTCCGCTGCATCGCCTGGAAG
66 TAGCTTCAATCTGTTCCGCTGCATCGCCTGGAAG
* * *
1415637 TAAGATTCGCCGTTGTAGCCTCGATCTTTTAAACTT-CAATGTCGGGGAAGTGAGATTCGACGC-
1 TAAGATTCGCCGTTGTGGCTTCGATCTTTTGAA-TTGCAATGTCGGGGAAGTGAGATTC-AC-CA
*
1415700 -CGTAGCTTCAATCTGTTTCGCTGCATCGCCTGGAAG
63 TCGTAGCTTCAATCTGTTCCGCTGCATCGCCTGGAAG
* *
1415736 TAAGATTCACCGTTGTGGCTTCGATCTTTTGAATTGCAATGTCGGGGAAGTGAGATTCGCCATCG
1 TAAGATTCGCCGTTGTGGCTTCGATCTTTTGAATTGCAATGTCGGGGAAGTGAGATTCACCATCG
* *
1415801 TAGCTTCAATCTGTTCCACTGCATCGCCAGGGAAG
66 TAGCTTCAATCTGTTCCGCTGCATCGCC-TGGAAG
* * * * * **
1415836 TAAGATTTGCCATTGTGGCATCGATCTTTTGAATTACAATGTCGGGGAATTGAGATTCACCGCCG
1 TAAGATTCGCCGTTGTGGCTTCGATCTTTTGAATTGCAATGTCGGGGAAGTGAGATTCACCATCG
1415901 TAGCTTCAATCTGTTCCGCTGCATCGCCTGGAAG
66 TAGCTTCAATCTGTTCCGCTGCATCGCCTGGAAG
*
1415935 TAAGATTCGCCGTTGTGGCTTCGATCTTTTGAATTGCAATGTCGGGGAAGTGAGATTCACCATTG
1 TAAGATTCGCCGTTGTGGCTTCGATCTTTTGAATTGCAATGTCGGGGAAGTGAGATTCACCATCG
* *
1416000 TAGCTTCAATCTGTTCCACTGCATCGCCAGAGAAG
66 TAGCTTCAATCTGTTCCGCTGCATCGCCTG-GAAG
* * * * *
1416035 TAAGACTCGCCGTTGTGGCTTCGATCTTTTGAACTGCACTGTCGGGGAAGTAAGATTCACCGTCG
1 TAAGATTCGCCGTTGTGGCTTCGATCTTTTGAATTGCAATGTCGGGGAAGTGAGATTCACCATCG
*
1416100 TAGCTTCAATCTGTTCCGCTGCATCGCTTGGAAG
66 TAGCTTCAATCTGTTCCGCTGCATCGCCTGGAAG
* * *
1416134 TAAGATTCACCGTTGTGGCCTCAATCTTT
1 TAAGATTCGCCGTTGTGGCTTCGATCTTT
1416163 CAATTTGCAA
Statistics
Matches: 463, Mismatches: 53, Indels: 18
0.87 0.10 0.03
Matches are distributed among these distances:
97 23 0.05
98 6 0.01
99 252 0.54
100 181 0.39
101 1 0.00
ACGTcount: A:0.22, C:0.23, G:0.25, T:0.31
Consensus pattern (99 bp):
TAAGATTCGCCGTTGTGGCTTCGATCTTTTGAATTGCAATGTCGGGGAAGTGAGATTCACCATCG
TAGCTTCAATCTGTTCCGCTGCATCGCCTGGAAG
Found at i:1415914 original size:199 final size:198
Alignment explanation
Indices: 1415540--1416162 Score: 912
Period size: 199 Copynumber: 3.1 Consensus size: 198
1415530 ACCGAAGAAA
* * * * * **
1415540 TAAGATTCGCCGTTGCGGCTTCAATC-TTT-AGTTGTAATGTCGGGAAAGCAAGATTCGCCATCG
1 TAAGATTCACCGTTGTGGCTTCAATCTTTTGAATTGCAATGTCGGGGAAGTGAGATTCGCCATCG
* * * *
1415603 TAGCTTCAATCTGTTCCGCTGCATCGCC-TGGAAGTAAGATTCGCCGTTGTAGCCTCGATCTTTT
66 TAGCTTCAATCTGTTCCACTGCATCGCCAGGGAAGTAAGATTCGCCGTTGTGGCATCGATCTTTT
* *
1415667 AAACTTCAATGTCGGGGAAGTGAGATTCGA-CGCCGTAGCTTCAATCTGTTTCGCTGCATCGCCT
131 GAA-TTCAATGTCGGGGAAGTGAGATTC-ACCGCCGTAGCTTCAATCTGTTCCGCTGCATCGCCT
1415731 GGAAG
194 GGAAG
*
1415736 TAAGATTCACCGTTGTGGCTTCGATCTTTTGAATTGCAATGTCGGGGAAGTGAGATTCGCCATCG
1 TAAGATTCACCGTTGTGGCTTCAATCTTTTGAATTGCAATGTCGGGGAAGTGAGATTCGCCATCG
* *
1415801 TAGCTTCAATCTGTTCCACTGCATCGCCAGGGAAGTAAGATTTGCCATTGTGGCATCGATCTTTT
66 TAGCTTCAATCTGTTCCACTGCATCGCCAGGGAAGTAAGATTCGCCGTTGTGGCATCGATCTTTT
*
1415866 GAATTACAATGTCGGGGAATTGAGATTCACCGCCGTAGCTTCAATCTGTTCCGCTGCATCGCCTG
131 GAATT-CAATGTCGGGGAAGTGAGATTCACCGCCGTAGCTTCAATCTGTTCCGCTGCATCGCCTG
1415931 GAAG
195 GAAG
* * * *
1415935 TAAGATTCGCCGTTGTGGCTTCGATCTTTTGAATTGCAATGTCGGGGAAGTGAGATTCACCATTG
1 TAAGATTCACCGTTGTGGCTTCAATCTTTTGAATTGCAATGTCGGGGAAGTGAGATTCGCCATCG
* * *
1416000 TAGCTTCAATCTGTTCCACTGCATCGCCAGAGAAGTAAGACTCGCCGTTGTGGCTTCGATCTTTT
66 TAGCTTCAATCTGTTCCACTGCATCGCCAGGGAAGTAAGATTCGCCGTTGTGGCATCGATCTTTT
* * * * *
1416065 GAACTGCACTGTCGGGGAAGTAAGATTCACCGTCGTAGCTTCAATCTGTTCCGCTGCATCGCTTG
131 GAA-TTCAATGTCGGGGAAGTGAGATTCACCGCCGTAGCTTCAATCTGTTCCGCTGCATCGCCTG
1416130 GAAG
195 GAAG
*
1416134 TAAGATTCACCGTTGTGGCCTCAATCTTT
1 TAAGATTCACCGTTGTGGCTTCAATCTTT
1416163 CAATTTGCAA
Statistics
Matches: 387, Mismatches: 34, Indels: 9
0.90 0.08 0.02
Matches are distributed among these distances:
196 23 0.06
197 3 0.01
198 59 0.15
199 301 0.78
200 1 0.00
ACGTcount: A:0.22, C:0.23, G:0.25, T:0.31
Consensus pattern (198 bp):
TAAGATTCACCGTTGTGGCTTCAATCTTTTGAATTGCAATGTCGGGGAAGTGAGATTCGCCATCG
TAGCTTCAATCTGTTCCACTGCATCGCCAGGGAAGTAAGATTCGCCGTTGTGGCATCGATCTTTT
GAATTCAATGTCGGGGAAGTGAGATTCACCGCCGTAGCTTCAATCTGTTCCGCTGCATCGCCTGG
AAG
Found at i:1428025 original size:43 final size:43
Alignment explanation
Indices: 1427964--1428047 Score: 159
Period size: 43 Copynumber: 2.0 Consensus size: 43
1427954 ATTAAGCCAT
*
1427964 TTGGTTGAACGAGAAAAATCGACACCCAGCACCTTAGGGCACG
1 TTGGTTGAACGAGAAAAATCGACACCCAACACCTTAGGGCACG
1428007 TTGGTTGAACGAGAAAAATCGACACCCAACACCTTAGGGCA
1 TTGGTTGAACGAGAAAAATCGACACCCAACACCTTAGGGCA
1428048 TGTTTTCTCG
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 40 1.00
ACGTcount: A:0.35, C:0.25, G:0.24, T:0.17
Consensus pattern (43 bp):
TTGGTTGAACGAGAAAAATCGACACCCAACACCTTAGGGCACG
Found at i:1428280 original size:109 final size:109
Alignment explanation
Indices: 1428083--1428338 Score: 422
Period size: 109 Copynumber: 2.3 Consensus size: 109
1428073 AACATTGCCT
* * *
1428083 TAAGGTGTTGGGTGTCGATTTTTCTCGTTCAACCAAATGGCTTAATTTCCTTTTAAAAATTTTAA
1 TAAGGTGCTGGGTGTCGATTTTTCTCGTTCAACCAAATGGCTTAATATCCTTTTAAAAATTTCAA
* * *
1428148 AATAAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAATGTGCAC
66 AATAAGGCAATGTTTTACATTTGGAAATTCGAGAAAATATGCAC
*
1428192 TAAGGTGCTGGGTGTCGATTTTTCTTGTTCAACCAAATGGCTTAATATCCTTTTAAAAATTTCAA
1 TAAGGTGCTGGGTGTCGATTTTTCTCGTTCAACCAAATGGCTTAATATCCTTTTAAAAATTTCAA
*
1428257 AATAAGGCAATGTTTTACATTTGGAAATTCGAGAAAATATGCCC
66 AATAAGGCAATGTTTTACATTTGGAAATTCGAGAAAATATGCAC
* *
1428301 TAAGGTGCTGGGTGTCGATTTTTCTCATTAAACCAAAT
1 TAAGGTGCTGGGTGTCGATTTTTCTCGTTCAACCAAAT
1428339 TGCCAAAATA
Statistics
Matches: 136, Mismatches: 11, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
109 136 1.00
ACGTcount: A:0.30, C:0.14, G:0.19, T:0.37
Consensus pattern (109 bp):
TAAGGTGCTGGGTGTCGATTTTTCTCGTTCAACCAAATGGCTTAATATCCTTTTAAAAATTTCAA
AATAAGGCAATGTTTTACATTTGGAAATTCGAGAAAATATGCAC
Found at i:1428959 original size:22 final size:24
Alignment explanation
Indices: 1428921--1428968 Score: 73
Period size: 23 Copynumber: 2.1 Consensus size: 24
1428911 AAAATATTTT
*
1428921 AAATGTTATAAATTTTTT-TAGAA
1 AAATATTATAAATTTTTTATAGAA
1428944 AAATATTAT-AATTTTTTATAGAA
1 AAATATTATAAATTTTTTATAGAA
1428967 AA
1 AA
1428969 TTTATTGAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 8 0.35
23 15 0.65
ACGTcount: A:0.48, C:0.00, G:0.06, T:0.46
Consensus pattern (24 bp):
AAATATTATAAATTTTTTATAGAA
Found at i:1429285 original size:41 final size:41
Alignment explanation
Indices: 1429228--1429310 Score: 130
Period size: 41 Copynumber: 2.0 Consensus size: 41
1429218 TTATGGACCG
* * *
1429228 ATCCAATTTACTATTCAATAATTTAAAATATTTAGAAACTA
1 ATCCAATTCACTATTCAATAATTAAAAATATCTAGAAACTA
*
1429269 ATCCAATTCAGTATTCAATAATTAAAAATATCTAGAAACTA
1 ATCCAATTCACTATTCAATAATTAAAAATATCTAGAAACTA
1429310 A
1 A
1429311 GTTTATTTTA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
41 38 1.00
ACGTcount: A:0.48, C:0.13, G:0.04, T:0.35
Consensus pattern (41 bp):
ATCCAATTCACTATTCAATAATTAAAAATATCTAGAAACTA
Found at i:1430915 original size:15 final size:15
Alignment explanation
Indices: 1430895--1430924 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
1430885 TACCCCAGTC
1430895 ACAGATACAGAAATA
1 ACAGATACAGAAATA
*
1430910 ACAGATACAGTAATA
1 ACAGATACAGAAATA
1430925 TCATGCATAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.57, C:0.13, G:0.13, T:0.17
Consensus pattern (15 bp):
ACAGATACAGAAATA
Found at i:1432390 original size:29 final size:30
Alignment explanation
Indices: 1432353--1432424 Score: 69
Period size: 29 Copynumber: 2.4 Consensus size: 30
1432343 AGGATAGATG
*
1432353 TTAACTATAATTTTAAAAT-ATT-TTATTTT
1 TTAAATAT-ATTTTAAAATGATTCTTATTTT
* * *
1432382 TTAATTATA-TTTAAAGTGATTCTTTTTTT
1 TTAAATATATTTTAAAATGATTCTTATTTT
1432411 TTAAATATGATTTT
1 TTAAATAT-ATTTT
1432425 TTCTATTAAT
Statistics
Matches: 35, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
27 7 0.20
28 4 0.11
29 20 0.57
30 1 0.03
31 3 0.09
ACGTcount: A:0.33, C:0.03, G:0.04, T:0.60
Consensus pattern (30 bp):
TTAAATATATTTTAAAATGATTCTTATTTT
Found at i:1432394 original size:27 final size:30
Alignment explanation
Indices: 1432364--1432423 Score: 72
Period size: 29 Copynumber: 2.1 Consensus size: 30
1432354 TAACTATAAT
*
1432364 TTTAAAAT-ATT-TTATTTTTTAATTAT-A
1 TTTAAAATGATTCTTATTTTTTAAATATGA
* *
1432391 TTTAAAGTGATTCTTTTTTTTTAAATATGA
1 TTTAAAATGATTCTTATTTTTTAAATATGA
1432421 TTT
1 TTT
1432424 TTTCTATTAA
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
27 7 0.26
28 3 0.11
29 13 0.48
30 4 0.15
ACGTcount: A:0.32, C:0.02, G:0.05, T:0.62
Consensus pattern (30 bp):
TTTAAAATGATTCTTATTTTTTAAATATGA
Found at i:1432670 original size:19 final size:20
Alignment explanation
Indices: 1432646--1432687 Score: 59
Period size: 19 Copynumber: 2.1 Consensus size: 20
1432636 AAAACTATTA
1432646 TTTTTACTATTTC-TGCTAT
1 TTTTTACTATTTCTTGCTAT
* *
1432665 TTTTTATTTTTTCTTGCTAT
1 TTTTTACTATTTCTTGCTAT
1432685 TTT
1 TTT
1432688 CTTGTCGTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
19 11 0.55
20 9 0.45
ACGTcount: A:0.12, C:0.12, G:0.05, T:0.71
Consensus pattern (20 bp):
TTTTTACTATTTCTTGCTAT
Found at i:1433720 original size:115 final size:115
Alignment explanation
Indices: 1433523--1433755 Score: 349
Period size: 115 Copynumber: 2.0 Consensus size: 115
1433513 AAGTAAATTC
* * * *
1433523 AATATTCAAAGTCCATCCTTCTTCCTTCCATTTTATGCGTGTATGAAGGCGGTAAAAGTACCATG
1 AATATTCAAAGTCCATCATTCTTCCTTCCATTTTATGCATGTATGAAGACGGTAAAAGTACCATA
** * * *
1433588 GAGACCCTTGTACAAGGAGTTGGATTGCATTTTGTCTCATCTATTCAAAA
66 GAGACCCTTGTACAAGGAAATGGATTGCATTTTGCCCCATCTACTCAAAA
* *
1433638 AATATTCAAAGTCCATCATTCTTCCTTCCATTTTATGTATGTATGAAGATGGTAAAAGTACCATA
1 AATATTCAAAGTCCATCATTCTTCCTTCCATTTTATGCATGTATGAAGACGGTAAAAGTACCATA
* *
1433703 GAGACCCTTGTAGAAGGAAATGGATTGGATTTTGCCCCATCTACTCAAAA
66 GAGACCCTTGTACAAGGAAATGGATTGCATTTTGCCCCATCTACTCAAAA
1433753 AAT
1 AAT
1433756 GGTAAATTAG
Statistics
Matches: 105, Mismatches: 13, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
115 105 1.00
ACGTcount: A:0.31, C:0.19, G:0.17, T:0.33
Consensus pattern (115 bp):
AATATTCAAAGTCCATCATTCTTCCTTCCATTTTATGCATGTATGAAGACGGTAAAAGTACCATA
GAGACCCTTGTACAAGGAAATGGATTGCATTTTGCCCCATCTACTCAAAA
Found at i:1434500 original size:13 final size:13
Alignment explanation
Indices: 1434484--1434508 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1434474 ATCATTAAAG
1434484 ATTCTCAAGGGAT
1 ATTCTCAAGGGAT
1434497 ATTCTCAAGGGA
1 ATTCTCAAGGGA
1434509 AAATATACCA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.24, T:0.28
Consensus pattern (13 bp):
ATTCTCAAGGGAT
Found at i:1438400 original size:16 final size:18
Alignment explanation
Indices: 1438371--1438403 Score: 52
Period size: 16 Copynumber: 1.9 Consensus size: 18
1438361 TAGTTTTCAT
1438371 TATTATATTATATTTTAC
1 TATTATATTATATTTTAC
1438389 TATTAT-TT-TATTTTA
1 TATTATATTATATTTTA
1438404 ATAATATTGA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.47
17 2 0.13
18 6 0.40
ACGTcount: A:0.30, C:0.03, G:0.00, T:0.67
Consensus pattern (18 bp):
TATTATATTATATTTTAC
Found at i:1450630 original size:19 final size:20
Alignment explanation
Indices: 1450595--1450634 Score: 57
Period size: 19 Copynumber: 2.0 Consensus size: 20
1450585 TAAACAACCT
1450595 ACAAACTAAAAAGAAATTAA
1 ACAAACTAAAAAGAAATTAA
1450615 ACAAA-TAAACAA-AAATTAA
1 ACAAACTAAA-AAGAAATTAA
1450634 A
1 A
1450635 AATAAAAGAA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 12 0.63
20 7 0.37
ACGTcount: A:0.72, C:0.10, G:0.03, T:0.15
Consensus pattern (20 bp):
ACAAACTAAAAAGAAATTAA
Found at i:1454027 original size:65 final size:65
Alignment explanation
Indices: 1453923--1454059 Score: 265
Period size: 65 Copynumber: 2.1 Consensus size: 65
1453913 ACCAAGTGGA
1453923 ATTCAATGGAAATGATCAACCTCATCCACTAACATTTAATTTATGGCTAAATTATATTTAAGGCC
1 ATTCAATGGAAATGATCAACCTCATCCACTAACATTTAATTTATGGCTAAATTATATTTAAGGCC
1453988 ATTCAATGGAAATGATCAACCTCATCCACTAACATTTAATTTATGGCTAAATTATATTTAAGGCC
1 ATTCAATGGAAATGATCAACCTCATCCACTAACATTTAATTTATGGCTAAATTATATTTAAGGCC
1454053 ATGTCAA
1 AT-TCAA
1454060 ATTACTTAAT
Statistics
Matches: 71, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
65 67 0.94
66 4 0.06
ACGTcount: A:0.37, C:0.18, G:0.11, T:0.34
Consensus pattern (65 bp):
ATTCAATGGAAATGATCAACCTCATCCACTAACATTTAATTTATGGCTAAATTATATTTAAGGCC
Found at i:1455841 original size:105 final size:106
Alignment explanation
Indices: 1455658--1455868 Score: 415
Period size: 105 Copynumber: 2.0 Consensus size: 106
1455648 GAAAGAGGAC
1455658 CAAAGCAGAATTTTTCCAAGATTAATTAGCTGAAATTTTTGTTGACTTAGTGGGAGATTATGTAG
1 CAAAGCAGAATTTTTCCAAGATTAATTAGCTGAAATTTTTGTTGACTTAGTGGGAGATTATGTAG
1455723 GGATTTTTAATATTTTATTCCTTGATTTTCTATACTAGTTG
66 GGATTTTTAATATTTTATTCCTTGATTTTCTATACTAGTTG
1455764 CAAAGCAGAA-TTTTCCAAGATTAATTAGCTGAAATTTTTGTTGACTTAGTGGGAGATTATGTAG
1 CAAAGCAGAATTTTTCCAAGATTAATTAGCTGAAATTTTTGTTGACTTAGTGGGAGATTATGTAG
1455828 GGATTTTTAATATTTTATTCCTTGATTTTCTATACTAGTTG
66 GGATTTTTAATATTTTATTCCTTGATTTTCTATACTAGTTG
1455869 GCTCTTAATT
Statistics
Matches: 105, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
105 95 0.90
106 10 0.10
ACGTcount: A:0.28, C:0.09, G:0.18, T:0.44
Consensus pattern (106 bp):
CAAAGCAGAATTTTTCCAAGATTAATTAGCTGAAATTTTTGTTGACTTAGTGGGAGATTATGTAG
GGATTTTTAATATTTTATTCCTTGATTTTCTATACTAGTTG
Found at i:1457758 original size:8 final size:8
Alignment explanation
Indices: 1457745--1457779 Score: 61
Period size: 8 Copynumber: 4.2 Consensus size: 8
1457735 CTTTTTGAAA
1457745 AAAAAAAG
1 AAAAAAAG
1457753 AAAAAAAG
1 AAAAAAAG
1457761 AAAAAAAAG
1 -AAAAAAAG
1457770 AAAAAAAG
1 AAAAAAAG
1457778 AA
1 AA
1457780 GAAATGAATA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
8 18 0.69
9 8 0.31
ACGTcount: A:0.89, C:0.00, G:0.11, T:0.00
Consensus pattern (8 bp):
AAAAAAAG
Found at i:1457758 original size:9 final size:9
Alignment explanation
Indices: 1457744--1457776 Score: 59
Period size: 9 Copynumber: 3.8 Consensus size: 9
1457734 TCTTTTTGAA
1457744 AAAAAAAAG
1 AAAAAAAAG
1457753 -AAAAAAAG
1 AAAAAAAAG
1457761 AAAAAAAAG
1 AAAAAAAAG
1457770 AAAAAAA
1 AAAAAAA
1457777 GAAGAAATGA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
8 8 0.35
9 15 0.65
ACGTcount: A:0.91, C:0.00, G:0.09, T:0.00
Consensus pattern (9 bp):
AAAAAAAAG
Found at i:1457766 original size:17 final size:17
Alignment explanation
Indices: 1457744--1457779 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
1457734 TCTTTTTGAA
1457744 AAAAAAAAGAAAAAAAG
1 AAAAAAAAGAAAAAAAG
1457761 AAAAAAAAGAAAAAAAG
1 AAAAAAAAGAAAAAAAG
1457778 AA
1 AA
1457780 GAAATGAATA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.89, C:0.00, G:0.11, T:0.00
Consensus pattern (17 bp):
AAAAAAAAGAAAAAAAG
Found at i:1464843 original size:18 final size:18
Alignment explanation
Indices: 1464820--1464856 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
1464810 CTTAATATTA
1464820 AGGTTCGCACAACAACAT
1 AGGTTCGCACAACAACAT
* *
1464838 AGGTTCGCATAATAACAT
1 AGGTTCGCACAACAACAT
1464856 A
1 A
1464857 CAATATGGGT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.41, C:0.22, G:0.16, T:0.22
Consensus pattern (18 bp):
AGGTTCGCACAACAACAT
Found at i:1468279 original size:32 final size:31
Alignment explanation
Indices: 1468234--1468329 Score: 174
Period size: 31 Copynumber: 3.1 Consensus size: 31
1468224 CTTAGATAAT
1468234 TTTAAAGAGTTTTATTAGGATTCAATTACTC
1 TTTAAAGAGTTTTATTAGGATTCAATTACTC
1468265 TTTAAAGAGTTTTTATTAGGATTCAATTACTC
1 TTTAAAGAG-TTTTATTAGGATTCAATTACTC
*
1468297 TTGAAAGAGTTTTATTAGGATTCAATTACTC
1 TTTAAAGAGTTTTATTAGGATTCAATTACTC
1468328 TT
1 TT
1468330 GTAATTTGCC
Statistics
Matches: 63, Mismatches: 1, Indels: 2
0.95 0.02 0.03
Matches are distributed among these distances:
31 33 0.52
32 30 0.48
ACGTcount: A:0.31, C:0.09, G:0.14, T:0.46
Consensus pattern (31 bp):
TTTAAAGAGTTTTATTAGGATTCAATTACTC
Found at i:1469260 original size:24 final size:24
Alignment explanation
Indices: 1469227--1469274 Score: 78
Period size: 24 Copynumber: 2.0 Consensus size: 24
1469217 TCATTCTGTG
*
1469227 GCAAATGATGAATTGACGATAAAT
1 GCAAAGGATGAATTGACGATAAAT
*
1469251 GCAAAGGATGAATTGACGGTAAAT
1 GCAAAGGATGAATTGACGATAAAT
1469275 TACCCAAGTA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.44, C:0.08, G:0.25, T:0.23
Consensus pattern (24 bp):
GCAAAGGATGAATTGACGATAAAT
Found at i:1469437 original size:42 final size:42
Alignment explanation
Indices: 1469374--1469514 Score: 192
Period size: 42 Copynumber: 3.4 Consensus size: 42
1469364 GTTTCTGTTC
* * *
1469374 AACCCTAATGGGTTTTTGTTCAGCTCTTTTAAGCTTTAGTTT
1 AACCCTTATGGGTTTTCGTTCAGCTCTTTTAAGCTTCAGTTT
*
1469416 AACCCTTACGGGTTTTCGTTCAGCTCTTTTAAGCTTCAGTTT
1 AACCCTTATGGGTTTTCGTTCAGCTCTTTTAAGCTTCAGTTT
* * ** * *
1469458 AACCTTTATGGGTTTCCGTTCAGCTCTTACAAGCTTCCGTTC
1 AACCCTTATGGGTTTTCGTTCAGCTCTTTTAAGCTTCAGTTT
1469500 AACCCTTATGGGTTT
1 AACCCTTATGGGTTT
1469515 CCATTTAGTT
Statistics
Matches: 87, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 87 1.00
ACGTcount: A:0.18, C:0.23, G:0.17, T:0.43
Consensus pattern (42 bp):
AACCCTTATGGGTTTTCGTTCAGCTCTTTTAAGCTTCAGTTT
Found at i:1469516 original size:21 final size:21
Alignment explanation
Indices: 1469458--1469516 Score: 55
Period size: 21 Copynumber: 2.8 Consensus size: 21
1469448 GCTTCAGTTT
*
1469458 AACCTTTATGGGTTTCCGTTC
1 AACCCTTATGGGTTTCCGTTC
* * *** *
1469479 AGCTCTTACAAGCTTCCGTTC
1 AACCCTTATGGGTTTCCGTTC
1469500 AACCCTTATGGGTTTCC
1 AACCCTTATGGGTTTCC
1469517 ATTTAGTTCT
Statistics
Matches: 25, Mismatches: 13, Indels: 0
0.66 0.34 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.17, C:0.29, G:0.17, T:0.37
Consensus pattern (21 bp):
AACCCTTATGGGTTTCCGTTC
Found at i:1470940 original size:19 final size:20
Alignment explanation
Indices: 1470916--1470961 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 20
1470906 TGCAATGTTG
1470916 AAAATTTT-AAAATTTTTGA
1 AAAATTTTCAAAATTTTTGA
** *
1470935 AAAATTTTCTGAGTTTTTGA
1 AAAATTTTCAAAATTTTTGA
1470955 AAAATTT
1 AAAATTT
1470962 GTTTCTAGTG
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
19 8 0.35
20 15 0.65
ACGTcount: A:0.41, C:0.02, G:0.09, T:0.48
Consensus pattern (20 bp):
AAAATTTTCAAAATTTTTGA
Found at i:1477781 original size:2 final size:2
Alignment explanation
Indices: 1477774--1477803 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
1477764 TAAAAATGGA
1477774 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1477804 GAATTAAAAG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:1480306 original size:34 final size:36
Alignment explanation
Indices: 1480258--1480329 Score: 105
Period size: 36 Copynumber: 2.1 Consensus size: 36
1480248 TTTTTTAAAT
1480258 TTATTTACTTCCATCA-T-TTATTATTATTGTTATA
1 TTATTTACTTCCATCATTATTATTATTATTGTTATA
*
1480292 TTATTTA-TTACCATCATTATTATTATTATTTTTATA
1 TTATTTACTT-CCATCATTATTATTATTATTGTTATA
1480328 TT
1 TT
1480330 TGTACATACG
Statistics
Matches: 34, Mismatches: 1, Indels: 4
0.87 0.03 0.10
Matches are distributed among these distances:
33 2 0.06
34 13 0.38
35 1 0.03
36 18 0.53
ACGTcount: A:0.28, C:0.10, G:0.01, T:0.61
Consensus pattern (36 bp):
TTATTTACTTCCATCATTATTATTATTATTGTTATA
Found at i:1482505 original size:19 final size:19
Alignment explanation
Indices: 1482481--1482523 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
1482471 GTCTCTTTTC
* *
1482481 GCATTT-ATTTCATGCATTT
1 GCATTTCATTACAT-CATAT
1482500 GCATTTCATTACATCATAT
1 GCATTTCATTACATCATAT
1482519 GCATT
1 GCATT
1482524 AAACACAGTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
19 15 0.71
20 6 0.29
ACGTcount: A:0.26, C:0.19, G:0.09, T:0.47
Consensus pattern (19 bp):
GCATTTCATTACATCATAT
Found at i:1484434 original size:18 final size:18
Alignment explanation
Indices: 1484411--1484450 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
1484401 GCAAGTGTTC
1484411 TTTCATTCTTTACGATTT
1 TTTCATTCTTTACGATTT
**
1484429 TTTCATTCTTTTGGATTT
1 TTTCATTCTTTACGATTT
1484447 TTTC
1 TTTC
1484451 TGCCAAACCA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.12, C:0.15, G:0.07, T:0.65
Consensus pattern (18 bp):
TTTCATTCTTTACGATTT
Found at i:1485385 original size:28 final size:27
Alignment explanation
Indices: 1485354--1485407 Score: 81
Period size: 28 Copynumber: 2.0 Consensus size: 27
1485344 ATGACGAGAT
1485354 GAAAAATGAAAAATGAAAAAGTTAAAAC
1 GAAAAATGAAAAATGAAAAAG-TAAAAC
* *
1485382 GAAAATTGAAAAATGGAAAAGTAAAA
1 GAAAAATGAAAAATGAAAAAGTAAAA
1485408 TGGAGAGGCT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
27 5 0.21
28 19 0.79
ACGTcount: A:0.67, C:0.02, G:0.17, T:0.15
Consensus pattern (27 bp):
GAAAAATGAAAAATGAAAAAGTAAAAC
Found at i:1485677 original size:13 final size:14
Alignment explanation
Indices: 1485633--1485681 Score: 57
Period size: 13 Copynumber: 3.6 Consensus size: 14
1485623 TGACGAGATG
*
1485633 GAAAATGAAAAAGT
1 GAAAATGGAAAAGT
**
1485647 GAAAAT-GAAATTT
1 GAAAATGGAAAAGT
1485660 GAAAATGGAAAAGT
1 GAAAATGGAAAAGT
1485674 -AAAATGGA
1 GAAAATGGA
1485682 GAGGCTAAGG
Statistics
Matches: 29, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
13 18 0.62
14 11 0.38
ACGTcount: A:0.59, C:0.00, G:0.22, T:0.18
Consensus pattern (14 bp):
GAAAATGGAAAAGT
Found at i:1485776 original size:270 final size:274
Alignment explanation
Indices: 1485286--1485831 Score: 893
Period size: 270 Copynumber: 2.0 Consensus size: 274
1485276 AATACTCCGT
1485286 TTAAAGAATGAGATGACCAAGGTAAAAACCCGCAAAGGGCACTTTGAGTCGTAAAAAAATGACGA
1 TTAAAGAATGAGATGACCAAGGTAAAAACCCGCAAAGGGCACTTTGAGTCGTAAAAAAATGACGA
*
1485351 GATGAAAAATGAAAAATGAAAAAGTTAAAACGAAAATTGAAAAATGGAAAAGTAAAATGGAGAGG
66 GATG----A-GAAAAATGAAAAAGTGAAAACGAAAATTGAAAAATGGAAAAGTAAAATGGAGAGG
1485416 CTAAGGTGAAAACCCGCAAAGGGCACCTTAGACCAAAGGAGATTTGAGTTGAAAACCCGAAAAGG
126 CTAAGGTGAAAACCCGCAAAGGGCACCTTAGACCAAAGGAGATTTGAGTTGAAAACCCGAAAAGG
* * * * *
1485481 GTGGCTCAAATATTGATCAGAATGTGGCATGAGATTATCAGAGTAGCTTAAATACTGATTAGGAT
191 GCGGCTCAAATATTGATCAGAATGTGGCATGAGATTATCAGAGTAGCTCAAATACTAATCAGCAT
1485546 GGGGCATGCAGTGGTCAGC
256 GGGGCATGCAGTGGTCAGC
* * *
1485565 TTAAAGAATGAGATGACCAAGGTAAAAACCCGTAAATGGCACTTTGAGTTGT-AAAAAATGACGA
1 TTAAAGAATGAGATGACCAAGGTAAAAACCCGCAAAGGGCACTTTGAGTCGTAAAAAAATGACGA
* *
1485629 GATG-G-AAAATGAAAAAGTGAAAATGAAATTTG-AAAATGGAAAAGTAAAATGGAGAGGCTAAG
66 GATGAGAAAAATGAAAAAGTGAAAACGAAAATTGAAAAATGGAAAAGTAAAATGGAGAGGCTAAG
* * *
1485691 GTGAAAATCCGCAAAGGGCGCCTTAGACCAAAGGGGATTTGAGTTGAAAACCCGAAAAGGGCGGC
131 GTGAAAACCCGCAAAGGGCACCTTAGACCAAAGGAGATTTGAGTTGAAAACCCGAAAAGGGCGGC
1485756 TCAAATATTGATCAGAATGTGGCATGAGATTATCAGAGTAGCTCAAATACTAATCAGCATGGGGC
196 TCAAATATTGATCAGAATGTGGCATGAGATTATCAGAGTAGCTCAAATACTAATCAGCATGGGGC
1485821 ATGCAGTGGTC
261 ATGCAGTGGTC
1485832 TTGCTATACC
Statistics
Matches: 253, Mismatches: 14, Indels: 9
0.92 0.05 0.03
Matches are distributed among these distances:
270 163 0.64
271 24 0.09
272 1 0.00
278 16 0.06
279 49 0.19
ACGTcount: A:0.42, C:0.13, G:0.26, T:0.20
Consensus pattern (274 bp):
TTAAAGAATGAGATGACCAAGGTAAAAACCCGCAAAGGGCACTTTGAGTCGTAAAAAAATGACGA
GATGAGAAAAATGAAAAAGTGAAAACGAAAATTGAAAAATGGAAAAGTAAAATGGAGAGGCTAAG
GTGAAAACCCGCAAAGGGCACCTTAGACCAAAGGAGATTTGAGTTGAAAACCCGAAAAGGGCGGC
TCAAATATTGATCAGAATGTGGCATGAGATTATCAGAGTAGCTCAAATACTAATCAGCATGGGGC
ATGCAGTGGTCAGC
Found at i:1486907 original size:44 final size:44
Alignment explanation
Indices: 1486807--1487068 Score: 173
Period size: 44 Copynumber: 6.0 Consensus size: 44
1486797 AGTGAAAATA
* * *
1486807 ACAGATCTTACCTCCCTGAGGTTA-CAGTGGAGTACATTGAAGCCATT
1 ACAGATCTTATCTCCCT-AGG-CAGCAGTGGAGTAGATTGAAG--ATT
* * * *
1486854 A-A-TTC-TATCTCCCTGGGTAGCAGTGGAATAGATTGAAGATT
1 ACAGATCTTATCTCCCTAGGCAGCAGTGGAGTAGATTGAAGATT
* * * * * *
1486895 ATAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGA-TCAAGGATG
1 ACAGATCTTATCTCCCTAGGCAGCAGTGGAGTAGATTGAA-GATT
* * * * *
1486939 ACGGATTTTACCTCCCTGAGGTTA-CAGTGGAGTACATTGAAG---
1 ACAGATCTTATCTCCCT-AGG-CAGCAGTGGAGTAGATTGAAGATT
* * *
1486981 CCAGTAACTCTATCTCCCTAGGCAGCAGTGGAATAGATTGAAGATT
1 ACAG-ATCT-TATCTCCCTAGGCAGCAGTGGAGTAGATTGAAGATT
* *
1487027 ACAGATCTTATCTCCCTAGGCAGTAGTGGAGTAGATCGAAGA
1 ACAGATCTTATCTCCCTAGGCAGCAGTGGAGTAGATTGAAGA
1487069 AATCAATCCT
Statistics
Matches: 164, Mismatches: 37, Indels: 31
0.71 0.16 0.13
Matches are distributed among these distances:
41 4 0.02
42 6 0.04
43 44 0.27
44 84 0.51
45 17 0.10
46 8 0.05
47 1 0.01
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.27
Consensus pattern (44 bp):
ACAGATCTTATCTCCCTAGGCAGCAGTGGAGTAGATTGAAGATT
Found at i:1487051 original size:132 final size:132
Alignment explanation
Indices: 1486814--1487063 Score: 437
Period size: 132 Copynumber: 1.9 Consensus size: 132
1486804 ATAACAGATC
* * * *
1486814 TTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCATTAATTCTATCTCCCTGGGTAGCAGTG
1 TTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTAACTCTATCTCCCTAGGCAGCAGTG
*
1486879 GAATAGATTGAAGATTATAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAGGATGACGGA
66 GAATAGATTGAAGATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAGGATGACGGA
1486944 TT
131 TT
1486946 TTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTAACTCTATCTCCCTAGGCAGCAGTG
1 TTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTAACTCTATCTCCCTAGGCAGCAGTG
* *
1487011 GAATAGATTGAAGATTACAGATCTTATCTCCCTAGGCAGTAGTGGAGTAGATC
66 GAATAGATTGAAGATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATC
1487064 GAAGAAATCA
Statistics
Matches: 111, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
132 111 1.00
ACGTcount: A:0.28, C:0.20, G:0.24, T:0.28
Consensus pattern (132 bp):
TTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTAACTCTATCTCCCTAGGCAGCAGTG
GAATAGATTGAAGATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAGGATGACGGA
TT
Found at i:1487099 original size:44 final size:44
Alignment explanation
Indices: 1487051--1487227 Score: 134
Period size: 44 Copynumber: 4.1 Consensus size: 44
1487041 CCTAGGCAGT
* *
1487051 AGTGGAGTAGATCGAAGAAATCAATCCTATCTCCCTGAAGTTGC
1 AGTGGAGCAGATCGAAGAAATCAATCTTATCTCCCTGAAGTTGC
** * * *
1487095 AGTGGAGTGGAT-TAA-AACCA-CAGATCTTATCACTCTGAAGTTGC
1 AGTGGAGCAGATCGAAGAA--ATCA-ATCTTATCTCCCTGAAGTTGC
* * * *
1487139 AGTAGAGCAGATC---G-TATCCAAACTTATCTCCCTAAAGTTGC
1 AGTGGAGCAGATCGAAGAAAT-CAATCTTATCTCCCTGAAGTTGC
* * * *
1487180 AGTGGAGCAGATTGAAGAAACCAATCTTATCTTCCTGAAGTTAC
1 AGTGGAGCAGATCGAAGAAATCAATCTTATCTCCCTGAAGTTGC
1487224 AGTG
1 AGTG
1487228 AATCGGATTA
Statistics
Matches: 101, Mismatches: 21, Indels: 22
0.70 0.15 0.15
Matches are distributed among these distances:
40 1 0.01
41 28 0.28
42 4 0.04
43 4 0.04
44 63 0.62
45 1 0.01
ACGTcount: A:0.32, C:0.20, G:0.21, T:0.27
Consensus pattern (44 bp):
AGTGGAGCAGATCGAAGAAATCAATCTTATCTCCCTGAAGTTGC
Found at i:1487141 original size:132 final size:131
Alignment explanation
Indices: 1486815--1487102 Score: 328
Period size: 132 Copynumber: 2.2 Consensus size: 131
1486805 TAACAGATCT
* * * * * * ** *
1486815 TACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCATTAATTCTATCTCCCTGGGTAGCAGTGG
1 TACCTCCCTGAAGTTACAGTGGAGTACATTAAACCCAGTAACTCTATCACCCTAAGCAGCAGTGG
* * *
1486880 AATAGATTGAAGATTATAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAGGATGACGGAT
66 AATAGATTGAAGATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAGAAT-ACGAAT
**
1486945 TT
130 CC
* * * * *
1486947 TACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTAACTCTATCTCCCTAGGCAGCAGTGG
1 TACCTCCCTGAAGTTACAGTGGAGTACATTAAACCCAGTAACTCTATCACCCTAAGCAGCAGTGG
* *
1487012 AATAGATTGAAGATTACAGATCTTATCTCCCTAGGCAGTAGTGGAGTAGATCGAAGAA-ATC-AA
66 AATAGATTGAAGATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATC-AAGAATA-CGAA
1487075 TCC
129 TCC
* *
1487078 TATCTCCCTGAAGTTGCAGTGGAGT
1 TACCTCCCTGAAGTTACAGTGGAGT
1487103 GGATTAAAAC
Statistics
Matches: 140, Mismatches: 14, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
131 25 0.18
132 111 0.79
133 4 0.03
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (131 bp):
TACCTCCCTGAAGTTACAGTGGAGTACATTAAACCCAGTAACTCTATCACCCTAAGCAGCAGTGG
AATAGATTGAAGATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAGAATACGAATC
C
Found at i:1487304 original size:129 final size:129
Alignment explanation
Indices: 1487051--1487311 Score: 301
Period size: 129 Copynumber: 2.0 Consensus size: 129
1487041 CCTAGGCAGT
* * * *
1487051 AGTGGAGTAGATCGAAGAAATCAATCCTATCTCCCTGAAGTTGCAGTGGAGTGGATTAAAACCAC
1 AGTGGAGCAGATCGAAGAAACCAATCCTATCTCCCTGAAGTTACAGTGGAATGGATTAAAACCAC
* * * *
1487116 AGATCTTATCACTCTGAAGTTGCAGTAGAGCAGATCGTATCCAAACTTATCTCCCTAAAGTTGC
66 AGAACTTATCACTCTGAAGTTGCAGTAGAGCAGATAGCATCCAAACTTATCTCCCTAAAGATGC
* * * * **
1487180 AGTGGAGCAGATTGAAGAAACCAATCTTATCTTCCTGAAGTTACAGT-GAATCGGATTAGAATGA
1 AGTGGAGCAGATCGAAGAAACCAATCCTATCTCCCTGAAGTTACAGTGGAAT-GGATTAAAACCA
** * * * * *
1487244 TGGAACTTATCTCTCTGAAGTTGCAGTAGAGTAGATAGCAT-CAGACTTTATTTCCTTAAAGATG
65 CAGAACTTATCACTCTGAAGTTGCAGTAGAGCAGATAGCATCCAAAC-TTATCTCCCTAAAGATG
1487308 C
129 C
1487309 AGT
1 AGT
1487312 AAACCAAGTT
Statistics
Matches: 109, Mismatches: 21, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
128 7 0.06
129 102 0.94
ACGTcount: A:0.32, C:0.18, G:0.21, T:0.28
Consensus pattern (129 bp):
AGTGGAGCAGATCGAAGAAACCAATCCTATCTCCCTGAAGTTACAGTGGAATGGATTAAAACCAC
AGAACTTATCACTCTGAAGTTGCAGTAGAGCAGATAGCATCCAAACTTATCTCCCTAAAGATGC
Found at i:1488030 original size:13 final size:13
Alignment explanation
Indices: 1488012--1488036 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1488002 TAGGGGGGCC
1488012 CTCATTTTTTTCT
1 CTCATTTTTTTCT
1488025 CTCATTTTTTTC
1 CTCATTTTTTTC
1488037 ATCTTTTCTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.08, C:0.24, G:0.00, T:0.68
Consensus pattern (13 bp):
CTCATTTTTTTCT
Found at i:1491722 original size:44 final size:44
Alignment explanation
Indices: 1491674--1491993 Score: 197
Period size: 44 Copynumber: 7.3 Consensus size: 44
1491664 CCAGTAATTC
* * *
1491674 TATCTCCCTAGGCAGCAGTGGAATATATTGATGATTACAGATCT
1 TATCTCCCTAGGCAGCAGTGGAATAGATTGAAGATGACAGATCT
* * * * * * *
1491718 TATCTCCTTAGGCAGTAGTGGAGTAGATCGAAAATGGCAGATTT
1 TATCTCCCTAGGCAGCAGTGGAATAGATTGAAGATGACAGATCT
* * * * * *
1491762 TACCTCCCTGAGGTTA-CAGTGGAGTACATTG-AG--GCCAGTAACT
1 TATCTCCCT-AGG-CAGCAGTGGAATAGATTGAAGATGACAG-ATCT
*
1491805 CTATCTCCCTAGGCAGCAGTGGAATAGATTGAAGATTACAGATCT
1 -TATCTCCCTAGGCAGCAGTGGAATAGATTGAAGATGACAGATCT
* * ** * *
1491850 TATCTCCCTAGGCAGTAGTGGAGTAGATCAAAGATGGCAGATTT
1 TATCTCCCTAGGCAGCAGTGGAATAGATTGAAGATGACAGATCT
* * * * * * * *
1491894 TACCTCTCTGAGGTTA-CAGTGGAGTACATTAAAGCAAG-TA-AT-T
1 TATCTCCCT-AGG-CAGCAGTGGAATAGATTGAAG-ATGACAGATCT
* * * *
1491937 CTATCTCCCTGGGCAACAGTGGAATAAATTGAAGATTACAGATCT
1 -TATCTCCCTAGGCAGCAGTGGAATAGATTGAAGATGACAGATCT
1491982 TATCTCCCTAGG
1 TATCTCCCTAGG
1491994 AAGTAATAGA
Statistics
Matches: 207, Mismatches: 53, Indels: 32
0.71 0.18 0.11
Matches are distributed among these distances:
42 7 0.03
43 37 0.18
44 118 0.57
45 38 0.18
46 7 0.03
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (44 bp):
TATCTCCCTAGGCAGCAGTGGAATAGATTGAAGATGACAGATCT
Found at i:1491811 original size:132 final size:132
Alignment explanation
Indices: 1491574--1492013 Score: 702
Period size: 132 Copynumber: 3.3 Consensus size: 132
1491564 NNNNNNNNNN
* *
1491574 GATTACAGATCTTATCTCCCTAGGCAGTAGTGGAGTAGATCGAAGATGGCGGATTTTACCTCCCT
1 GATTACAGATCTTATCTCCCTAGGCAGTAGTGGAGTAGATCGAAAATGGCAGATTTTACCTCCCT
* * *
1491639 GAGGTTACGGTGAAGTACATTGAGGCCAGTAATTCTATCTCCCTAGGCAGCAGTGGAATATATTG
66 GAGGTTACAGTGGAGTACATTGAGGCCAGTAATTCTATCTCCCTAGGCAGCAGTGGAATAAATTG
*
1491704 AT
131 AA
*
1491706 GATTACAGATCTTATCTCCTTAGGCAGTAGTGGAGTAGATCGAAAATGGCAGATTTTACCTCCCT
1 GATTACAGATCTTATCTCCCTAGGCAGTAGTGGAGTAGATCGAAAATGGCAGATTTTACCTCCCT
* *
1491771 GAGGTTACAGTGGAGTACATTGAGGCCAGTAACTCTATCTCCCTAGGCAGCAGTGGAATAGATTG
66 GAGGTTACAGTGGAGTACATTGAGGCCAGTAATTCTATCTCCCTAGGCAGCAGTGGAATAAATTG
1491836 AA
131 AA
*
1491838 GATTACAGATCTTATCTCCCTAGGCAGTAGTGGAGTAGATC-AAAGATGGCAGATTTTACCTCTC
1 GATTACAGATCTTATCTCCCTAGGCAGTAGTGGAGTAGATCGAAA-ATGGCAGATTTTACCTCCC
* * * * *
1491902 TGAGGTTACAGTGGAGTACATTAAAGCAAGTAATTCTATCTCCCTGGGCAACAGTGGAATAAATT
65 TGAGGTTACAGTGGAGTACATTGAGGCCAGTAATTCTATCTCCCTAGGCAGCAGTGGAATAAATT
1491967 GAA
130 GAA
* * *
1491970 GATTACAGATCTTATCTCCCTAGGAAGTAATAGAGTAGATCGAA
1 GATTACAGATCTTATCTCCCTAGGCAGTAGTGGAGTAGATCGAA
1492014 GAAAGCAGAT
Statistics
Matches: 286, Mismatches: 20, Indels: 3
0.93 0.06 0.01
Matches are distributed among these distances:
131 3 0.01
132 281 0.98
133 2 0.01
ACGTcount: A:0.30, C:0.18, G:0.24, T:0.28
Consensus pattern (132 bp):
GATTACAGATCTTATCTCCCTAGGCAGTAGTGGAGTAGATCGAAAATGGCAGATTTTACCTCCCT
GAGGTTACAGTGGAGTACATTGAGGCCAGTAATTCTATCTCCCTAGGCAGCAGTGGAATAAATTG
AA
Found at i:1492214 original size:180 final size:180
Alignment explanation
Indices: 1492003--1493090 Score: 2126
Period size: 180 Copynumber: 6.1 Consensus size: 180
1491993 GAAGTAATAG
* * *
1492003 AGTAGATCG-AAG-AAAGCAGATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGATAACAA
1 AGTAGATCGAAAGAAAAACAGATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAATATAACAG
1492066 ATCTCGCCTTCCCATACTGGTGGCGAAGCAGATCGAAGGAATACAGATCTTGTCTTCATGTACTG
66 ATCTCGCCTTCCCATACTGGTGGCGAAGCAGATCGAAGGAATACAGATCTTGTCTTCATGTACTG
*
1492131 GCGTGAAGTAGATCGAATATACAGATCTCGCCTTCCCATACTGGTGGCAA
131 GCGTGAAGTAGATCGAATATACAGATCTCGCATTCCCATACTGGTGGCAA
1492181 AGTAGATCGAAAGAAAAACAGATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAATATAACAG
1 AGTAGATCGAAAGAAAAACAGATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAATATAACAG
1492246 ATCTCGCCTTCCCATACTGGTGGCGAAGCAGATCGAAGGAATACAGATCTTGTCTTCATGTACTG
66 ATCTCGCCTTCCCATACTGGTGGCGAAGCAGATCGAAGGAATACAGATCTTGTCTTCATGTACTG
1492311 GCGTGAAGTAGATCGAATATACAGATCTCGCATTCCCATACTGGTGGCAA
131 GCGTGAAGTAGATCGAATATACAGATCTCGCATTCCCATACTGGTGGCAA
1492361 AGTAGATCGAAAGAAAAACAGATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAATATAACAG
1 AGTAGATCGAAAGAAAAACAGATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAATATAACAG
1492426 ATCTCGCCTTCCCATACTGGTGGCGAAGCAGATCGAAGGAATACAGATCTTGTCTTCATGTACTG
66 ATCTCGCCTTCCCATACTGGTGGCGAAGCAGATCGAAGGAATACAGATCTTGTCTTCATGTACTG
1492491 GCGTGAAGTAGATCGAATATACAGATCTCGCATTCCCATACTGGTGGCAA
131 GCGTGAAGTAGATCGAATATACAGATCTCGCATTCCCATACTGGTGGCAA
1492541 AGTAGATCGAAAGAAAAACAGATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAATATAACAG
1 AGTAGATCGAAAGAAAAACAGATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAATATAACAG
1492606 ATCTCGCCTTCCCATACTGGTGGCGAAGCAGATCGAAGGAATACAGATCTTGTCTTCATGTACTG
66 ATCTCGCCTTCCCATACTGGTGGCGAAGCAGATCGAAGGAATACAGATCTTGTCTTCATGTACTG
1492671 GCGTGAAGTAGATCGAATATACAGATCTCGCATTCCCATACTGGTGGCAA
131 GCGTGAAGTAGATCGAATATACAGATCTCGCATTCCCATACTGGTGGCAA
1492721 AGTAGATCGAAAGAAAAACAGATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAATATAACAG
1 AGTAGATCGAAAGAAAAACAGATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAATATAACAG
1492786 ATCTCGCCTTCCCATACTGGTGGCGAAGCAGATCGAAGGAATACAGATCTTGTCTTCATGTACTG
66 ATCTCGCCTTCCCATACTGGTGGCGAAGCAGATCGAAGGAATACAGATCTTGTCTTCATGTACTG
1492851 GCGTGAAGTAGATCGAATATACAGATCTCGCATTCCCATACTGGTGGCAA
131 GCGTGAAGTAGATCGAATATACAGATCTCGCATTCCCATACTGGTGGCAA
1492901 AGTAGATCGAAAGAAAAACAGATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAATATAACAG
1 AGTAGATCGAAAGAAAAACAGATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAATATAACAG
1492966 ATCTCGCCTTCCCATACTGGTGGCGAAGCAGATCGAAGGAATACAGATCTTGTCTTCATGTACTG
66 ATCTCGCCTTCCCATACTGGTGGCGAAGCAGATCGAAGGAATACAGATCTTGTCTTCATGTACTG
1493031 GCGTGAAGTAGATCGAATATACAGATCTCGCATTCCCATACTGGTGGCAA
131 GCGTGAAGTAGATCGAATATACAGATCTCGCATTCCCATACTGGTGGCAA
1493081 AGTAGATCGA
1 AGTAGATCGA
1493091 TTATTTCTAT
Statistics
Matches: 904, Mismatches: 4, Indels: 2
0.99 0.00 0.00
Matches are distributed among these distances:
178 9 0.01
179 3 0.00
180 892 0.99
ACGTcount: A:0.32, C:0.20, G:0.23, T:0.25
Consensus pattern (180 bp):
AGTAGATCGAAAGAAAAACAGATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAATATAACAG
ATCTCGCCTTCCCATACTGGTGGCGAAGCAGATCGAAGGAATACAGATCTTGTCTTCATGTACTG
GCGTGAAGTAGATCGAATATACAGATCTCGCATTCCCATACTGGTGGCAA
Found at i:1493232 original size:29 final size:29
Alignment explanation
Indices: 1493199--1493257 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
1493189 CTCCCTGAGG
1493199 TTACAGTGGAGTACATTGAAGCCAGTAAT
1 TTACAGTGGAGTACATTGAAGCCAGTAAT
1493228 TTACAGTGGAGTACATTGAAGCCAGTAAT
1 TTACAGTGGAGTACATTGAAGCCAGTAAT
1493257 T
1 T
1493258 CTATCTCTCT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.34, C:0.14, G:0.24, T:0.29
Consensus pattern (29 bp):
TTACAGTGGAGTACATTGAAGCCAGTAAT
Found at i:1493360 original size:161 final size:161
Alignment explanation
Indices: 1493095--1493389 Score: 464
Period size: 161 Copynumber: 1.8 Consensus size: 161
1493085 GATCGATTAT
* *
1493095 TTCTATCTCCCTAGGCAACAGTGGAATAGATTGAAGATTACAGATCTTATCTCCATAAGTAGAAG
1 TTCTATCTCCCTAGGCAACAGTAGAATAGATTGAAGATTACAGATCTTATCTCCATAAGCAGAAG
* *
1493160 TGGAGCAGATCAAAGATGGTGGATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGT
66 TGGAGCAGATCAAAGACGGTGAATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGT
1493225 AATTTACAGTGGAGTACATTGAAGCCAGTAA
131 AATTTACAGTGGAGTACATTGAAGCCAGTAA
* * * * * *
1493256 TTCTATCTCTCTGGGCAGCAGTAGAATAGATTGAAGATTACAGATCTTATCTCCCTAGGCAGTAG
1 TTCTATCTCCCTAGGCAACAGTAGAATAGATTGAAGATTACAGATCTTATCTCCATAAGCAGAAG
* * * *
1493321 TGGAGCAGATCGAAGACGGTGAATTTTACCTTCCTGAGGTTACAGTGGAGTCCATTGAAGCCGGT
66 TGGAGCAGATCAAAGACGGTGAATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGT
1493386 AATT
131 AATT
1493390 CTATCTCCCT
Statistics
Matches: 120, Mismatches: 14, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
161 120 1.00
ACGTcount: A:0.30, C:0.18, G:0.24, T:0.28
Consensus pattern (161 bp):
TTCTATCTCCCTAGGCAACAGTAGAATAGATTGAAGATTACAGATCTTATCTCCATAAGCAGAAG
TGGAGCAGATCAAAGACGGTGAATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGT
AATTTACAGTGGAGTACATTGAAGCCAGTAA
Found at i:1495050 original size:132 final size:132
Alignment explanation
Indices: 1493228--1495008 Score: 2933
Period size: 132 Copynumber: 13.5 Consensus size: 132
1493218 AGCCAGTAAT
* * * * * *
1493228 TTACAGTGGAGTACATTGAAGCCAGTAATTCTATCTCTCTGGGCAGCAGTAGAATAGATTGAAGA
1 TTACAGTGGAGTACATTCAACCCAGTAATTCTATCTCCCTAGGCAACAGTGGAATAGATTGAAGA
* * * * * * *
1493293 TTACAGATCTTATCTCCCTAGGCAGTAGTGGAGCAGATCGAAGACGG-TGAATTTTACCT-TCCT
66 TTACAGATCTTATCTCCCTAGGCAATATTGGAGTAGATCGAAAATGGCCG-ATTTTACCTCT-TT
1493356 GAGG
129 GAGG
* * * *
1493360 TTACAGTGGAGTCCATTGAAGCCGGTAATTCTATCTCCCTAGGCAACAGTGGAATAGATTGAAGA
1 TTACAGTGGAGTACATTCAACCCAGTAATTCTATCTCCCTAGGCAACAGTGGAATAGATTGAAGA
1493425 TTACAGATCTTATCTCCCTAGGCAATATTGGAGTAGATCGAAAATGGCCGATTTTACCTCTTTGA
66 TTACAGATCTTATCTCCCTAGGCAATATTGGAGTAGATCGAAAATGGCCGATTTTACCTCTTTGA
1493490 GG
131 GG
1493492 TTACAGTGGAGTACATTCAACCCAGTAATTCTATCTCCCTAGGCAACAGTGGAATAGATTGAAGA
1 TTACAGTGGAGTACATTCAACCCAGTAATTCTATCTCCCTAGGCAACAGTGGAATAGATTGAAGA
1493557 TTACAGATCTTATCTCCCTAGGCAATATTGGAGTAGATCGAAAATGGCCGATTTTACCTCTTTGA
66 TTACAGATCTTATCTCCCTAGGCAATATTGGAGTAGATCGAAAATGGCCGATTTTACCTCTTTGA
1493622 GG
131 GG
1493624 TTACAGTGGAGTACATTCAACCCAGTAATTCTATCTCCCTAGGCAACAGTGGAATAGATTGAAGA
1 TTACAGTGGAGTACATTCAACCCAGTAATTCTATCTCCCTAGGCAACAGTGGAATAGATTGAAGA
1493689 TTACAGATCTTATCTCCCTAGGCAATATTGGAGTAGATCGAAAATGGCCGATTTTACCTCTTTGA
66 TTACAGATCTTATCTCCCTAGGCAATATTGGAGTAGATCGAAAATGGCCGATTTTACCTCTTTGA
1493754 GG
131 GG
1493756 TTACAGTGGAGTACATTCAACCCAGTAATTCTATCTCCCTAGGCAACAGTGGAATAGATTGAAGA
1 TTACAGTGGAGTACATTCAACCCAGTAATTCTATCTCCCTAGGCAACAGTGGAATAGATTGAAGA
1493821 TTACAGATCTTATCTCCCTAGGCAATATTGGAGTAGATCGAAAATGGCCGATTTTACCTCTTTGA
66 TTACAGATCTTATCTCCCTAGGCAATATTGGAGTAGATCGAAAATGGCCGATTTTACCTCTTTGA
1493886 GG
131 GG
1493888 TTACAGTGGAGTACATTCAACCCAGTAATTCTATCTCCCTAGGCAACAGTGGAATAGATTGAAGA
1 TTACAGTGGAGTACATTCAACCCAGTAATTCTATCTCCCTAGGCAACAGTGGAATAGATTGAAGA
1493953 TTACAGATCTTATCTCCCTAGGCAATATTGGAGTAGATCGAAAATGGCCGATTTTACCTCTTTGA
66 TTACAGATCTTATCTCCCTAGGCAATATTGGAGTAGATCGAAAATGGCCGATTTTACCTCTTTGA
1494018 GG
131 GG
1494020 TTACAGTGGAGTACATTCAACCCAGTAATTCTATCTCCCTAGGCAACAGTGGAATAGATTGAAGA
1 TTACAGTGGAGTACATTCAACCCAGTAATTCTATCTCCCTAGGCAACAGTGGAATAGATTGAAGA
1494085 TTACAGATCTTATCTCCCTAGGCAATATTGGAGTAGATCGAAAATGGCCGATTTTACCTCTTTGA
66 TTACAGATCTTATCTCCCTAGGCAATATTGGAGTAGATCGAAAATGGCCGATTTTACCTCTTTGA
1494150 GG
131 GG
1494152 TTACAGTGGAGTACATTCAACCCAGTAATTCTATCTCCCTAGGCAACAGTGGAATAGATTGAAGA
1 TTACAGTGGAGTACATTCAACCCAGTAATTCTATCTCCCTAGGCAACAGTGGAATAGATTGAAGA
1494217 TTACAGATCTTATCTCCCTAGGCAATATTGGAGTAGATCGAAAATGGCCGATTTTACCTCTTTGA
66 TTACAGATCTTATCTCCCTAGGCAATATTGGAGTAGATCGAAAATGGCCGATTTTACCTCTTTGA
1494282 GG
131 GG
1494284 TTACAGTGGAGTACATTCAACCCAGTAATTCTATCTCCCTAGGCAACAGTGGAATAGATTGAAGA
1 TTACAGTGGAGTACATTCAACCCAGTAATTCTATCTCCCTAGGCAACAGTGGAATAGATTGAAGA
1494349 TTACAGATCTTATCTCCCTAGGCAATATTGGAGTAGATCGAAAATGGCCGATTTTACCTCTTTGA
66 TTACAGATCTTATCTCCCTAGGCAATATTGGAGTAGATCGAAAATGGCCGATTTTACCTCTTTGA
1494414 GG
131 GG
1494416 TTACAGTGGAGTACATTCAACCCAGTAATTCTATCTCCCTAGGCAACAGTGGAATAGATTGAAGA
1 TTACAGTGGAGTACATTCAACCCAGTAATTCTATCTCCCTAGGCAACAGTGGAATAGATTGAAGA
*
1494481 TTACAGATCTTATCTCCCTAGGCAATATTGGAGTAGATCGAAAATGGCAGATTTTACCTCTTTGA
66 TTACAGATCTTATCTCCCTAGGCAATATTGGAGTAGATCGAAAATGGCCGATTTTACCTCTTTGA
1494546 GG
131 GG
* *
1494548 TTACAGTGGAGTACATTGAAGCCAGTAATTCTATCTCCCTAGGCAACAGTGGAATAGATTGAAGA
1 TTACAGTGGAGTACATTCAACCCAGTAATTCTATCTCCCTAGGCAACAGTGGAATAGATTGAAGA
* * * * ** **
1494613 TTACAGATCTTATCTCCCTAAGTAGA-AATGGAGCAGATC-AAAGATGGTGGATTTTACCTCCCT
66 TTACAGATCTTATCTCCCTAGGCA-ATATTGGAGTAGATCGAAA-ATGGCCGATTTTACCTCTTT
1494676 GAGG
129 GAGG
* * * * *
1494680 TTACAGTGGAGTACATTGAAGCCAGTAATTCTATCTCTCTAGGCAGCAGTAGAATAGATTGAAGA
1 TTACAGTGGAGTACATTCAACCCAGTAATTCTATCTCCCTAGGCAACAGTGGAATAGATTGAAGA
* * * * * **
1494745 TTACAGATCTTATCTCCCTAGGCAGTAGTGGAGTAGATCGAAGATGGCAGATTTTATCTCCCTGA
66 TTACAGATCTTATCTCCCTAGGCAATATTGGAGTAGATCGAAAATGGCCGATTTTACCTCTTTGA
1494810 GG
131 GG
* * * * * * * *
1494812 TTACAGTAGAGTACACTGAAGCCAGTAATTCTATCTTCCTGGGCAGCAGTGGAATAGATTAAAGA
1 TTACAGTGGAGTACATTCAACCCAGTAATTCTATCTCCCTAGGCAACAGTGGAATAGATTGAAGA
* * * * * **
1494877 TTACAGATATTATCTCCTTAGGCAGTAGTGGAGTAGATCGAAAATGGCAGATTTTACCTCCCTGA
66 TTACAGATCTTATCTCCCTAGGCAATATTGGAGTAGATCGAAAATGGCCGATTTTACCTCTTTGA
1494942 GG
131 GG
* * * ** *
1494944 TTACAGTGGAGTATATTGAAGCCAGTAATTCTATCTCCCT-GGTCGGCAGTGGAATCGATTGAAG
1 TTACAGTGGAGTACATTCAACCCAGTAATTCTATCTCCCTAGG-CAACAGTGGAATAGATTGAAG
1495008 A
65 A
1495009 AAGTAGATCT
Statistics
Matches: 1584, Mismatches: 58, Indels: 14
0.96 0.04 0.01
Matches are distributed among these distances:
131 5 0.00
132 1574 0.99
133 5 0.00
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.29
Consensus pattern (132 bp):
TTACAGTGGAGTACATTCAACCCAGTAATTCTATCTCCCTAGGCAACAGTGGAATAGATTGAAGA
TTACAGATCTTATCTCCCTAGGCAATATTGGAGTAGATCGAAAATGGCCGATTTTACCTCTTTGA
GG
Found at i:1495063 original size:44 final size:44
Alignment explanation
Indices: 1495004--1495153 Score: 182
Period size: 44 Copynumber: 3.5 Consensus size: 44
1494994 GGAATCGATT
*
1495004 GAAGAAAGTAGATCTTGTCTTCATGTATTGGCGTGAAGTAAATC
1 GAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAAATC
* * *
1495048 GAAGAAAGTAGATCTTGTCTTC----ATTGGTGTGATGTAAATC
1 GAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAAATC
** *
1495088 GAAGAAAGCAGATCTTGTCTTCATGTATTGGCACGAAGTAGATC
1 GAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAAATC
* * *
1495132 AAATAGAGCAGATCTTGTCTTC
1 GAAGAAAGCAGATCTTGTCTTC
1495154 CCATACTGGT
Statistics
Matches: 91, Mismatches: 11, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
40 37 0.41
44 54 0.59
ACGTcount: A:0.31, C:0.13, G:0.24, T:0.31
Consensus pattern (44 bp):
GAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAAATC
Found at i:1495085 original size:40 final size:40
Alignment explanation
Indices: 1495004--1495111 Score: 153
Period size: 40 Copynumber: 2.6 Consensus size: 40
1494994 GGAATCGATT
1495004 GAAGAAAGTAGATCTTGTCTTCATGTATTGGCGTGAAGTAAATC
1 GAAGAAAGTAGATCTTGTCTTC----ATTGGCGTGAAGTAAATC
* *
1495048 GAAGAAAGTAGATCTTGTCTTCATTGGTGTGATGTAAATC
1 GAAGAAAGTAGATCTTGTCTTCATTGGCGTGAAGTAAATC
*
1495088 GAAGAAAGCAGATCTTGTCTTCAT
1 GAAGAAAGTAGATCTTGTCTTCAT
1495112 GTATTGGCAC
Statistics
Matches: 61, Mismatches: 3, Indels: 4
0.90 0.04 0.06
Matches are distributed among these distances:
40 39 0.64
44 22 0.36
ACGTcount: A:0.31, C:0.12, G:0.24, T:0.32
Consensus pattern (40 bp):
GAAGAAAGTAGATCTTGTCTTCATTGGCGTGAAGTAAATC
Found at i:1495538 original size:48 final size:48
Alignment explanation
Indices: 1495482--1495578 Score: 185
Period size: 48 Copynumber: 2.0 Consensus size: 48
1495472 ACTAGTTCCT
*
1495482 ATACCTCTGAAGATGCAGGGGGATGGAATAAGGCTACCTGAAGAAGAG
1 ATACCTCTGAAGATGCAAGGGGATGGAATAAGGCTACCTGAAGAAGAG
1495530 ATACCTCTGAAGATGCAAGGGGATGGAATAAGGCTACCTGAAGAAGAG
1 ATACCTCTGAAGATGCAAGGGGATGGAATAAGGCTACCTGAAGAAGAG
1495578 A
1 A
1495579 AGCACTGAAG
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 48 1.00
ACGTcount: A:0.37, C:0.14, G:0.32, T:0.16
Consensus pattern (48 bp):
ATACCTCTGAAGATGCAAGGGGATGGAATAAGGCTACCTGAAGAAGAG
Found at i:1508805 original size:14 final size:14
Alignment explanation
Indices: 1508788--1508814 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
1508778 GGGTTTATGA
1508788 GTTTTGGTTATAGG
1 GTTTTGGTTATAGG
1508802 GTTTTGGTTATAG
1 GTTTTGGTTATAG
1508815 ACAAATGATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.15, C:0.00, G:0.33, T:0.52
Consensus pattern (14 bp):
GTTTTGGTTATAGG
Found at i:1516636 original size:38 final size:39
Alignment explanation
Indices: 1516547--1516646 Score: 130
Period size: 39 Copynumber: 2.6 Consensus size: 39
1516537 CGATTATAAT
* * * *
1516547 AATTATAATTACCATAGTTATAATAATGTTTGACCGAAA
1 AATTATAATTACAATAATTATAATAATATTCGACCGAAA
* * *
1516586 AATTACAATTACAATAATTATAATAATATTCGATCG-TA
1 AATTATAATTACAATAATTATAATAATATTCGACCGAAA
1516624 AATTATAATTACAATAATTATAA
1 AATTATAATTACAATAATTATAA
1516647 CAAGAATTTC
Statistics
Matches: 53, Mismatches: 8, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
38 23 0.43
39 30 0.57
ACGTcount: A:0.48, C:0.09, G:0.06, T:0.37
Consensus pattern (39 bp):
AATTATAATTACAATAATTATAATAATATTCGACCGAAA
Found at i:1526227 original size:136 final size:136
Alignment explanation
Indices: 1525967--1526220 Score: 323
Period size: 136 Copynumber: 1.9 Consensus size: 136
1525957 ATTTTGAAAC
* * * *
1525967 AATATGAAATAAAAAATACATATTAAAATGTTTATAAGAGGAATCAAAGATGGGACTCAAGAATG
1 AATATGAAATAAAAAATACATATTAAAATATTTATAAGAGGAATCAAACATGAGACTCAAAAATG
* * **
1526032 AAATTAGAATTATCTAACCATCTAACCAAAAGAGTTAATATGTTAAAAATATTAATAAAAAAACT
66 AAATCACAATTATCTAACCATCTAACCAAAAGAACTAATATGTTAAAAATATTAATAAAAAAACT
1526097 TAAAAT
131 TAAAAT
*** *
1526103 AATATGAAATAAAAAATACATATTAAAATATTTATAAGAGGAATTTGACTTGAGACTCAAAAATG
1 AATATGAAATAAAAAATACATATTAAAATATTTATAAGAGGAATCAAACATGAGACTCAAAAATG
* * * * * *
1526168 GAATCACATTTATTTAA-CATCTAACTAAAATAACTAATGTAG-TAAAAATATTA
66 AAATCACAATTATCTAACCATCTAACCAAAAGAACTAATAT-GTTAAAAATATTA
1526221 CTTAAAATAT
Statistics
Matches: 99, Mismatches: 18, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
135 29 0.29
136 70 0.71
ACGTcount: A:0.52, C:0.08, G:0.10, T:0.29
Consensus pattern (136 bp):
AATATGAAATAAAAAATACATATTAAAATATTTATAAGAGGAATCAAACATGAGACTCAAAAATG
AAATCACAATTATCTAACCATCTAACCAAAAGAACTAATATGTTAAAAATATTAATAAAAAAACT
TAAAAT
Found at i:1527623 original size:17 final size:16
Alignment explanation
Indices: 1527598--1527634 Score: 56
Period size: 16 Copynumber: 2.2 Consensus size: 16
1527588 TTATTAAAAA
1527598 TTTTAGTGGGGTCAAAT
1 TTTTAGT-GGGTCAAAT
*
1527615 TTTTGGTGGGTCAAAT
1 TTTTAGTGGGTCAAAT
1527631 TTTT
1 TTTT
1527635 TATGTGTCAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 13 0.68
17 6 0.32
ACGTcount: A:0.19, C:0.05, G:0.27, T:0.49
Consensus pattern (16 bp):
TTTTAGTGGGTCAAAT
Found at i:1528281 original size:18 final size:19
Alignment explanation
Indices: 1528247--1528282 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
1528237 ATTGTGATTG
*
1528247 AAAAGTGCTTTTAGAAAAA
1 AAAAGTACTTTTAGAAAAA
1528266 AAAAGTACTTTT-GAAAA
1 AAAAGTACTTTTAGAAAA
1528283 GTGTGATAGA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 5 0.31
19 11 0.69
ACGTcount: A:0.53, C:0.06, G:0.14, T:0.28
Consensus pattern (19 bp):
AAAAGTACTTTTAGAAAAA
Found at i:1528619 original size:33 final size:33
Alignment explanation
Indices: 1528506--1528620 Score: 103
Period size: 33 Copynumber: 3.5 Consensus size: 33
1528496 TTTGTAAAAT
* *
1528506 TAATAATACATAAAATATTTTGAA-AACTTAA-A
1 TAATAATACATAAAATA-TTTAAATAATTTAATA
*
1528538 T-ATAATA-ATAAATATATTTAAATAATTTAATG
1 TAATAATACATAAA-ATATTTAAATAATTTAATA
* * * * *
1528570 TATTGACATATGAAATATTTAAATAATTTAATA
1 TAATAATACATAAAATATTTAAATAATTTAATA
*
1528603 TAATGATACATAAAATAT
1 TAATAATACATAAAATAT
1528621 AAATTAATCT
Statistics
Matches: 66, Mismatches: 12, Indels: 9
0.76 0.14 0.10
Matches are distributed among these distances:
30 10 0.15
31 15 0.23
32 2 0.03
33 35 0.53
34 4 0.06
ACGTcount: A:0.53, C:0.03, G:0.04, T:0.39
Consensus pattern (33 bp):
TAATAATACATAAAATATTTAAATAATTTAATA
Found at i:1531287 original size:17 final size:17
Alignment explanation
Indices: 1531250--1531303 Score: 56
Period size: 17 Copynumber: 3.1 Consensus size: 17
1531240 TCCTCGACCC
1531250 TTTTTAAAAGGTTTACA-G
1 TTTTT-AAAGGTTTA-AGG
*
1531268 TTTTTAAATGTTTAAGG
1 TTTTTAAAGGTTTAAGG
* *
1531285 TTTTTTAAGGTTTAGGG
1 TTTTTAAAGGTTTAAGG
1531302 TT
1 TT
1531304 AGAAATTTGG
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
16 1 0.03
17 25 0.81
18 5 0.16
ACGTcount: A:0.26, C:0.02, G:0.20, T:0.52
Consensus pattern (17 bp):
TTTTTAAAGGTTTAAGG
Found at i:1535072 original size:15 final size:15
Alignment explanation
Indices: 1535052--1535082 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
1535042 TTTTCCACTA
1535052 CTTTATCTTCATCTT
1 CTTTATCTTCATCTT
*
1535067 CTTTATCTTGATCTT
1 CTTTATCTTCATCTT
1535082 C
1 C
1535083 ACCTCAAGCT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.26, G:0.03, T:0.58
Consensus pattern (15 bp):
CTTTATCTTCATCTT
Found at i:1544097 original size:44 final size:45
Alignment explanation
Indices: 1544049--1544135 Score: 140
Period size: 44 Copynumber: 2.0 Consensus size: 45
1544039 ATAGTTTGAA
*
1544049 TATTTTGATATTATTTTATGTAAAAAAATAGAAATTT-TTTGAGT
1 TATTTTGATATTATTTGATGTAAAAAAATAGAAATTTATTTGAGT
* *
1544093 TATTTTGATATTATTTGATGTAATAAAATAGAAGTTTATTTGA
1 TATTTTGATATTATTTGATGTAAAAAAATAGAAATTTATTTGA
1544136 TGTAATAAAA
Statistics
Matches: 39, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
44 34 0.87
45 5 0.13
ACGTcount: A:0.38, C:0.00, G:0.13, T:0.49
Consensus pattern (45 bp):
TATTTTGATATTATTTGATGTAAAAAAATAGAAATTTATTTGAGT
Found at i:1544171 original size:23 final size:23
Alignment explanation
Indices: 1544145--1544214 Score: 86
Period size: 29 Copynumber: 2.8 Consensus size: 23
1544135 ATGTAATAAA
1544145 AACCCTAACCTAATTTAAACCCT
1 AACCCTAACCTAATTTAAACCCT
1544168 AACCCTAACCTAATTAAATTAAAAACCCT
1 AACCCTAACCTAA-T---TT--AAACCCT
1544197 AACCCTAACCTAATTTAA
1 AACCCTAACCTAATTTAA
1544215 TTAAAAATCC
Statistics
Matches: 41, Mismatches: 0, Indels: 12
0.77 0.00 0.23
Matches are distributed among these distances:
23 15 0.37
24 1 0.02
25 2 0.05
27 2 0.05
28 1 0.02
29 20 0.49
ACGTcount: A:0.44, C:0.30, G:0.00, T:0.26
Consensus pattern (23 bp):
AACCCTAACCTAATTTAAACCCT
Found at i:1544194 original size:29 final size:29
Alignment explanation
Indices: 1544161--1544549 Score: 296
Period size: 29 Copynumber: 14.4 Consensus size: 29
1544151 AACCTAATTT
*
1544161 AAACCCTAACCCTAACCTAATTAAATTAA
1 AAACCCTAACCCTAACCTAATTTAATTAA
1544190 AAACCCTAACCCTAACCTAATTTAATTAA
1 AAACCCTAACCCTAACCTAATTTAATTAA
*
1544219 AAATCCTAACCCTAACCTAATTTAATTAA
1 AAACCCTAACCCTAACCTAATTTAATTAA
* * *
1544248 AGACCTTAACCCTAACCTAAATTAATTAA
1 AAACCCTAACCCTAACCTAATTTAATTAA
1544277 AAACCCTAACCTTAACCTTAACCTAATTTAATTAA
1 AAACCCTAA-C----CC-TAACCTAATTTAATTAA
*
1544312 AAACCCTAAACCCT----T-A---ACTTAA
1 AAACCCT-AACCCTAACCTAATTTAATTAA
*
1544334 AAACCCTAACCTTAACCTAATTTAATTAA
1 AAACCCTAACCCTAACCTAATTTAATTAA
1544363 AAACCCT-A----AACC---TTTAACTTAA
1 AAACCCTAACCCTAACCTAATTTAA-TTAA
*
1544385 AAACCCTAACCTTAACCTAATTTAATT--
1 AAACCCTAACCCTAACCTAATTTAATTAA
1544412 AAA----AACCCTAACCTAATTTAATTAA
1 AAACCCTAACCCTAACCTAATTTAATTAA
* *
1544437 AAACCCTAAACCCT----T-A---ACTTGA
1 AAACCCT-AACCCTAACCTAATTTAATTAA
*
1544459 AAACCCTAACCTTAACCTAATTTAATTAA
1 AAACCCTAACCCTAACCTAATTTAATTAA
*
1544488 AAACCCTAAACCCT----T-A---ACTTAA
1 AAACCCT-AACCCTAACCTAATTTAATTAA
*
1544510 AAACCCTAACCTTAACCTAATTTAATTAA
1 AAACCCTAACCCTAACCTAATTTAATTAA
*
1544539 AAAGCCTAACC
1 AAACCCTAACC
1544550 TAATTTAATT
Statistics
Matches: 289, Mismatches: 23, Indels: 96
0.71 0.06 0.24
Matches are distributed among these distances:
21 20 0.07
22 46 0.16
23 20 0.07
24 4 0.01
25 9 0.03
26 6 0.02
27 7 0.02
28 1 0.00
29 128 0.44
30 18 0.06
31 2 0.01
34 2 0.01
35 24 0.08
36 2 0.01
ACGTcount: A:0.45, C:0.26, G:0.01, T:0.28
Consensus pattern (29 bp):
AAACCCTAACCCTAACCTAATTTAATTAA
Found at i:1544333 original size:22 final size:20
Alignment explanation
Indices: 1544269--1544400 Score: 80
Period size: 22 Copynumber: 6.2 Consensus size: 20
1544259 CTAACCTAAA
1544269 TTAA-TTAAAAACCCTAACC
1 TTAACTTAAAAACCCTAACC
*
1544288 TTAACCTT---AA-CCTAA-T
1 TTAA-CTTAAAAACCCTAACC
1544304 TTAA-TTAAAAACCCTAAACCC
1 TTAACTTAAAAACCCT-AA-CC
1544325 TTAACTTAAAAACCCTAACC
1 TTAACTTAAAAACCCTAACC
1544345 TTAACCTAATTTAATTAAAAACCCTAAACC
1 TTAA-C--------TTAAAAACCCT-AACC
1544375 TTTAACTTAAAAACCCTAACC
1 -TTAACTTAAAAACCCTAACC
1544396 TTAAC
1 TTAAC
1544401 CTAATTTAAT
Statistics
Matches: 90, Mismatches: 2, Indels: 41
0.68 0.02 0.31
Matches are distributed among these distances:
14 2 0.02
16 4 0.04
17 7 0.08
18 5 0.06
19 6 0.07
20 11 0.12
21 13 0.14
22 22 0.24
29 11 0.12
30 5 0.06
31 4 0.04
ACGTcount: A:0.45, C:0.27, G:0.00, T:0.29
Consensus pattern (20 bp):
TTAACTTAAAAACCCTAACC
Found at i:1544348 original size:51 final size:51
Alignment explanation
Indices: 1544284--1544422 Score: 260
Period size: 51 Copynumber: 2.7 Consensus size: 51
1544274 TAAAAACCCT
*
1544284 AACCTTAACCTTAACCTAATTTAATTAAAAACCCTAAACCCTTAACTTAAA
1 AACCCTAACCTTAACCTAATTTAATTAAAAACCCTAAACCCTTAACTTAAA
*
1544335 AACCCTAACCTTAACCTAATTTAATTAAAAACCCTAAACCTTTAACTTAAA
1 AACCCTAACCTTAACCTAATTTAATTAAAAACCCTAAACCCTTAACTTAAA
1544386 AACCCTAACCTTAACCTAATTTAATTAAAAACCCTAA
1 AACCCTAACCTTAACCTAATTTAATTAAAAACCCTAA
1544423 CCTAATTTAA
Statistics
Matches: 86, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
51 86 1.00
ACGTcount: A:0.45, C:0.26, G:0.00, T:0.29
Consensus pattern (51 bp):
AACCCTAACCTTAACCTAATTTAATTAAAAACCCTAAACCCTTAACTTAAA
Found at i:1544379 original size:21 final size:21
Alignment explanation
Indices: 1544354--1544397 Score: 72
Period size: 21 Copynumber: 2.1 Consensus size: 21
1544344 CTTAACCTAA
1544354 TTTAA-TTAAAAACCCTAAACC
1 TTTAACTTAAAAACCCT-AACC
1544375 TTTAACTTAAAAACCCTAACC
1 TTTAACTTAAAAACCCTAACC
1544396 TT
1 TT
1544398 AACCTAATTT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
21 11 0.50
22 11 0.50
ACGTcount: A:0.43, C:0.25, G:0.00, T:0.32
Consensus pattern (21 bp):
TTTAACTTAAAAACCCTAACC
Found at i:1544435 original size:74 final size:74
Alignment explanation
Indices: 1544341--1544496 Score: 285
Period size: 74 Copynumber: 2.1 Consensus size: 74
1544331 TAAAAACCCT
* *
1544341 AACCTTAACCTAATTTAATTAAAAACCCTAAACCTTTAACTTAAAAACCCTAACCTTAACCTAAT
1 AACCCTAACCTAATTTAATTAAAAACCCTAAACCCTTAACTTAAAAACCCTAACCTTAACCTAAT
1544406 TTAATTAAA
66 TTAATTAAA
*
1544415 AACCCTAACCTAATTTAATTAAAAACCCTAAACCCTTAACTTGAAAACCCTAACCTTAACCTAAT
1 AACCCTAACCTAATTTAATTAAAAACCCTAAACCCTTAACTTAAAAACCCTAACCTTAACCTAAT
1544480 TTAATTAAA
66 TTAATTAAA
1544489 AACCCTAA
1 AACCCTAA
1544497 ACCCTTAACT
Statistics
Matches: 79, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
74 79 1.00
ACGTcount: A:0.46, C:0.25, G:0.01, T:0.29
Consensus pattern (74 bp):
AACCCTAACCTAATTTAATTAAAAACCCTAAACCCTTAACTTAAAAACCCTAACCTTAACCTAAT
TTAATTAAA
Found at i:1544439 original size:125 final size:125
Alignment explanation
Indices: 1544290--1544572 Score: 521
Period size: 125 Copynumber: 2.3 Consensus size: 125
1544280 CCCTAACCTT
*
1544290 AACCTTAACCTAATTTAATTAAAAACCCTAAACCCTTAACTTAAAAACCCTAACCTTAACCTAAT
1 AACCCTAACCTAATTTAATTAAAAACCCTAAACCCTTAACTTAAAAACCCTAACCTTAACCTAAT
*
1544355 TTAATTAAAAACCCTAAACCTTTAACTTAAAAACCCTAACCTTAACCTAATTTAATTAAA
66 TTAATTAAAAACCCTAAACCCTTAACTTAAAAACCCTAACCTTAACCTAATTTAATTAAA
*
1544415 AACCCTAACCTAATTTAATTAAAAACCCTAAACCCTTAACTTGAAAACCCTAACCTTAACCTAAT
1 AACCCTAACCTAATTTAATTAAAAACCCTAAACCCTTAACTTAAAAACCCTAACCTTAACCTAAT
1544480 TTAATTAAAAACCCTAAACCCTTAACTTAAAAACCCTAACCTTAACCTAATTTAATTAAA
66 TTAATTAAAAACCCTAAACCCTTAACTTAAAAACCCTAACCTTAACCTAATTTAATTAAA
* *
1544540 AAGCCTAACCTAATTTAATTAAAAATCCTAAAC
1 AACCCTAACCTAATTTAATTAAAAACCCTAAAC
1544573 TAAGTTAACA
Statistics
Matches: 153, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
125 153 1.00
ACGTcount: A:0.46, C:0.25, G:0.01, T:0.29
Consensus pattern (125 bp):
AACCCTAACCTAATTTAATTAAAAACCCTAAACCCTTAACTTAAAAACCCTAACCTTAACCTAAT
TTAATTAAAAACCCTAAACCCTTAACTTAAAAACCCTAACCTTAACCTAATTTAATTAAA
Found at i:1544445 original size:18 final size:20
Alignment explanation
Indices: 1544399--1544441 Score: 59
Period size: 23 Copynumber: 2.0 Consensus size: 20
1544389 CCTAACCTTA
1544399 ACCTAATTTAATTAAAAACCC
1 ACCTAATTTAATTAAAAA-CC
1544420 TAACCTAATTTAATTAAAAACC
1 --ACCTAATTTAATTAAAAACC
1544442 CTAAACCCTT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
22 2 0.10
23 18 0.90
ACGTcount: A:0.49, C:0.21, G:0.00, T:0.30
Consensus pattern (20 bp):
ACCTAATTTAATTAAAAACC
Found at i:1544477 original size:51 final size:51
Alignment explanation
Indices: 1544415--1544547 Score: 239
Period size: 51 Copynumber: 2.6 Consensus size: 51
1544405 TTTAATTAAA
* *
1544415 AACCCTAACCTAATTTAATTAAAAACCCTAAACCCTTAACTTGAAAACCCT
1 AACCTTAACCTAATTTAATTAAAAACCCTAAACCCTTAACTTAAAAACCCT
1544466 AACCTTAACCTAATTTAATTAAAAACCCTAAACCCTTAACTTAAAAACCCT
1 AACCTTAACCTAATTTAATTAAAAACCCTAAACCCTTAACTTAAAAACCCT
*
1544517 AACCTTAACCTAATTTAATTAAAAAGCCTAA
1 AACCTTAACCTAATTTAATTAAAAACCCTAA
1544548 CCTAATTTAA
Statistics
Matches: 79, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
51 79 1.00
ACGTcount: A:0.45, C:0.26, G:0.02, T:0.27
Consensus pattern (51 bp):
AACCTTAACCTAATTTAATTAAAAACCCTAAACCCTTAACTTAAAAACCCT
Found at i:1544509 original size:22 final size:20
Alignment explanation
Indices: 1544480--1544525 Score: 67
Period size: 22 Copynumber: 2.2 Consensus size: 20
1544470 TTAACCTAAT
1544480 TTAA-TTAAAAACCCTAAACCC
1 TTAACTTAAAAACCCT-AA-CC
1544501 TTAACTTAAAAACCCTAACC
1 TTAACTTAAAAACCCTAACC
1544521 TTAAC
1 TTAAC
1544526 CTAATTTAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
20 7 0.29
21 6 0.25
22 11 0.46
ACGTcount: A:0.46, C:0.28, G:0.00, T:0.26
Consensus pattern (20 bp):
TTAACTTAAAAACCCTAACC
Found at i:1544570 original size:18 final size:20
Alignment explanation
Indices: 1544524--1544564 Score: 55
Period size: 23 Copynumber: 1.9 Consensus size: 20
1544514 CCTAACCTTA
1544524 ACCTAATTTAATTAAAAAGCCT
1 ACCTAATTTAATTAAAAA--CT
1544546 AACCTAATTTAATTAAAAA
1 -ACCTAATTTAATTAAAAA
1544565 TCCTAAACTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.51, C:0.15, G:0.02, T:0.32
Consensus pattern (20 bp):
ACCTAATTTAATTAAAAACT
Found at i:1544724 original size:116 final size:116
Alignment explanation
Indices: 1544577--1544814 Score: 413
Period size: 116 Copynumber: 2.1 Consensus size: 116
1544567 CTAAACTAAG
* * *
1544577 TTAACAATGTTACATTCACGTCATGTTAGATTTGGAAAAATGTTTTGACTGGTACTAACAAATAA
1 TTAATAATGTTACATTCACATAATGTTAGATTTGGAAAAATGTTTTGACTGGTACTAACAAATAA
*
1544642 TAATTTTACATAATTTGATAATTTTACTAACCATTAATACAATTTTTTGAC
66 TAATTTTACATAATTTGATAATTTGACTAACCATTAATACAATTTTTTGAC
* *
1544693 TTAATAATTTTACATTCACATAATGTTAGATTTGGAAAAATGTTTTGACTGGTACTAACAATTAA
1 TTAATAATGTTACATTCACATAATGTTAGATTTGGAAAAATGTTTTGACTGGTACTAACAAATAA
*
1544758 TAATTTTATATAATTTGATAATTTGACTAACCATTAATACAATTTTTTGAC
66 TAATTTTACATAATTTGATAATTTGACTAACCATTAATACAATTTTTTGAC
1544809 TTAATA
1 TTAATA
1544815 CAATTTATCA
Statistics
Matches: 115, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
116 115 1.00
ACGTcount: A:0.38, C:0.11, G:0.10, T:0.42
Consensus pattern (116 bp):
TTAATAATGTTACATTCACATAATGTTAGATTTGGAAAAATGTTTTGACTGGTACTAACAAATAA
TAATTTTACATAATTTGATAATTTGACTAACCATTAATACAATTTTTTGAC
Found at i:1544831 original size:17 final size:18
Alignment explanation
Indices: 1544790--1544831 Score: 50
Period size: 17 Copynumber: 2.4 Consensus size: 18
1544780 TTGACTAACC
* *
1544790 ATTAATACAATTTTTTGA
1 ATTAATACAATTTTATCA
*
1544808 CTTAATACAA-TTTATCA
1 ATTAATACAATTTTATCA
1544825 ATTAATA
1 ATTAATA
1544832 ATTTCACAAA
Statistics
Matches: 20, Mismatches: 4, Indels: 1
0.80 0.16 0.04
Matches are distributed among these distances:
17 11 0.55
18 9 0.45
ACGTcount: A:0.43, C:0.10, G:0.02, T:0.45
Consensus pattern (18 bp):
ATTAATACAATTTTATCA
Found at i:1548146 original size:136 final size:136
Alignment explanation
Indices: 1547902--1548172 Score: 452
Period size: 136 Copynumber: 2.0 Consensus size: 136
1547892 AAAAAAAATA
* *
1547902 ATTATTTCTTCCGTGACCTACTGTAGCAAAAGCGCGTCCACGAGGGCGCGATTTTACAAATTCTT
1 ATTATTTCTTCCGTGACCTACTGTAGCAAAAGCACGTCCACGAGGGCGCGATTTCACAAATTCTT
* *
1547967 CTCAAATACCATCCTGCTAGAAGTGATTTTATATTATTTTATCAGAAACGTCAACTCGAAATTAT
66 CTCAAATACCATCCTGCTAGAAGCGATTTTATACTATTTTATCAGAAACGTCAACTCGAAATTAT
1548032 TTCTTT
131 TTCTTT
* *
1548038 ATTATTTCTTCCGTGACCTCCTGTAGCAAAAGCACGTCCACGAGGGTGCGATTTCACAAATTCTT
1 ATTATTTCTTCCGTGACCTACTGTAGCAAAAGCACGTCCACGAGGGCGCGATTTCACAAATTCTT
* * * *
1548103 CTCAAGTAGCATCCTGCTAGAAGCGATTTTATACTATTTTATCAGAAACTTCAACTCGAGATTAT
66 CTCAAATACCATCCTGCTAGAAGCGATTTTATACTATTTTATCAGAAACGTCAACTCGAAATTAT
1548168 TTCTT
131 TTCTT
1548173 CCAAGACCTA
Statistics
Matches: 125, Mismatches: 10, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
136 125 1.00
ACGTcount: A:0.28, C:0.22, G:0.15, T:0.35
Consensus pattern (136 bp):
ATTATTTCTTCCGTGACCTACTGTAGCAAAAGCACGTCCACGAGGGCGCGATTTCACAAATTCTT
CTCAAATACCATCCTGCTAGAAGCGATTTTATACTATTTTATCAGAAACGTCAACTCGAAATTAT
TTCTTT
Found at i:1549061 original size:25 final size:25
Alignment explanation
Indices: 1549014--1549061 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
1549004 TCTAAAATAT
* *
1549014 AATTTTTCTTATTTTGGTCACTCTA
1 AATTTTTCTTAATTTAGTCACTCTA
*
1549039 AATTTTTCTTAATTTAGTTACTC
1 AATTTTTCTTAATTTAGTCACTC
1549062 CAGATAAAAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.23, C:0.15, G:0.06, T:0.56
Consensus pattern (25 bp):
AATTTTTCTTAATTTAGTCACTCTA
Found at i:1550535 original size:14 final size:15
Alignment explanation
Indices: 1550500--1550538 Score: 57
Period size: 14 Copynumber: 2.8 Consensus size: 15
1550490 GCAGAGAGGA
1550500 TTTTGTATTTT-TTC
1 TTTTGTATTTTCTTC
1550514 TTTT-TATTTTCTT-
1 TTTTGTATTTTCTTC
1550527 TTTTGTATTTTC
1 TTTTGTATTTTC
1550539 GGCTATATAA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
13 10 0.43
14 13 0.57
ACGTcount: A:0.08, C:0.08, G:0.05, T:0.79
Consensus pattern (15 bp):
TTTTGTATTTTCTTC
Found at i:1556378 original size:6 final size:6
Alignment explanation
Indices: 1556339--1556372 Score: 68
Period size: 6 Copynumber: 5.7 Consensus size: 6
1556329 GAAAAGGAGA
1556339 AAAATC AAAATC AAAATC AAAATC AAAATC AAAA
1 AAAATC AAAATC AAAATC AAAATC AAAATC AAAA
1556373 ATAAAAGAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 28 1.00
ACGTcount: A:0.71, C:0.15, G:0.00, T:0.15
Consensus pattern (6 bp):
AAAATC
Found at i:1556385 original size:7 final size:7
Alignment explanation
Indices: 1556375--1556406 Score: 55
Period size: 7 Copynumber: 4.4 Consensus size: 7
1556365 AATCAAAAAT
1556375 AAAAGAA
1 AAAAGAA
1556382 AAAAGAA
1 AAAAGAA
1556389 GAAAAGAA
1 -AAAAGAA
1556397 AAAAGAA
1 AAAAGAA
1556404 AAA
1 AAA
1556407 GAAGAGGCCA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
7 17 0.71
8 7 0.29
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (7 bp):
AAAAGAA
Found at i:1556395 original size:15 final size:15
Alignment explanation
Indices: 1556375--1556403 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
1556365 AATCAAAAAT
1556375 AAAAGAAAAAAGAAG
1 AAAAGAAAAAAGAAG
1556390 AAAAGAAAAAAGAA
1 AAAAGAAAAAAGAA
1556404 AAAGAAGAGG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (15 bp):
AAAAGAAAAAAGAAG
Found at i:1558853 original size:218 final size:218
Alignment explanation
Indices: 1558475--1559074 Score: 977
Period size: 218 Copynumber: 2.8 Consensus size: 218
1558465 GTTCATTATA
* * * *
1558475 CAGGTCTTATCCCACTGAAGTTGCAGTGGGGCAGATCGAAGATGGAAAATCTTATCTCCCTGAGG
1 CAGGTCTTATCCCCCTGAAGTTGCAGTGGGGCAGATCAAAGATGGCAAATCTTATCTCCTTGAGG
* * *
1558540 TTGCAGTGGGGCAGATTGAAGCCGATAATCCCATCTCCCTGAAGTTGTAGCGGAGCAGATTAAAG
66 TTGCAGTGGAGCAGATTGAAGCCGATAATCCTATCTCCCTGAAGTTGTAGCGGAGCGGATTAAAG
1558605 TAATAGATCTTATCTCTCTGAAGTTGCAGTAGAGTGGATCGCATCAGGTCTTATCTCCCTCAGGT
131 TAATAGATCTTATCTCTCTGAAGTTGCAGTAGAGTGGATCGCATCAGGTCTTATCTCCCTCAGGT
1558670 TGCAGCAAAGCAGACTAAGTAAG
196 TGCAGCAAAGCAGACTAAGTAAG
*
1558693 CAGGTCTTATCCCCCTGAAGTTGTAGTGGGGCAGATCAAAGATGGCAAATCTTATCTCCTTGAGG
1 CAGGTCTTATCCCCCTGAAGTTGCAGTGGGGCAGATCAAAGATGGCAAATCTTATCTCCTTGAGG
* *
1558758 TTGCAGTGGAGTAGATTGAAGCCGATAATCCTATCTCCTTGAAGTTGTAGCGGAGCGGATTAAAG
66 TTGCAGTGGAGCAGATTGAAGCCGATAATCCTATCTCCCTGAAGTTGTAGCGGAGCGGATTAAAG
*
1558823 TAATAGATCTTATCTCTCTGAAGTTGCAGTAGAGTGGATCGCATCAGGTCTTATCTCCCTGAGGT
131 TAATAGATCTTATCTCTCTGAAGTTGCAGTAGAGTGGATCGCATCAGGTCTTATCTCCCTCAGGT
** *
1558888 TGCAGCGGAGCAGACTGAGTAAG
196 TGCAGCAAAGCAGACTAAGTAAG
*
1558911 TAGGTCTTATCCCCCTGAAGTTGCAGTGGGGCAGATCAAAGATGGCAAATCTTATCT-CTCTGAG
1 CAGGTCTTATCCCCCTGAAGTTGCAGTGGGGCAGATCAAAGATGGCAAATCTTATCTCCT-TGAG
* ** * * *
1558975 GTTGCAGTGGAGCAGATTAAAGTTGATAATCCTATCTCCCTGAAATTGTAGTGGAGCGAATTAAA
65 GTTGCAGTGGAGCAGATTGAAGCCGATAATCCTATCTCCCTGAAGTTGTAGCGGAGCGGATTAAA
* *
1559040 GTAATGGATCTTATCTCTCTGAAGTTGCAGCAGAG
130 GTAATAGATCTTATCTCTCTGAAGTTGCAGTAGAG
1559075 CAGACTGAGT
Statistics
Matches: 355, Mismatches: 26, Indels: 2
0.93 0.07 0.01
Matches are distributed among these distances:
217 2 0.01
218 353 0.99
ACGTcount: A:0.27, C:0.19, G:0.26, T:0.28
Consensus pattern (218 bp):
CAGGTCTTATCCCCCTGAAGTTGCAGTGGGGCAGATCAAAGATGGCAAATCTTATCTCCTTGAGG
TTGCAGTGGAGCAGATTGAAGCCGATAATCCTATCTCCCTGAAGTTGTAGCGGAGCGGATTAAAG
TAATAGATCTTATCTCTCTGAAGTTGCAGTAGAGTGGATCGCATCAGGTCTTATCTCCCTCAGGT
TGCAGCAAAGCAGACTAAGTAAG
Found at i:1558987 original size:89 final size:89
Alignment explanation
Indices: 1558871--1559167 Score: 336
Period size: 89 Copynumber: 3.3 Consensus size: 89
1558861 TCGCATCAGG
1558871 TCTTATCTCCCTGAGGTTGCAGCGGAGCAGACTGAGTAAGTAGGTCTTATCCCCCTGAAGTTGCA
1 TCTTATCTCCCTGAGGTTGCAGCGGAGCAGACTGAGTAAGTAGGTCTTATCCCCCTGAAGTTGCA
1558936 GTGGGGCAGATCAAAGATGGCAAA
66 GTGGGGCAGATCAAAGATGGCAAA
* * * * * * * * *
1558960 TCTTATCTCTCTGAGGTTGCAGTGGAGCAGATTAAAGT-TGATA-ATCCTATCTCCCTGAAATTG
1 TCTTATCTCCCTGAGGTTGCAGCGGAGCAGACT-GAGTAAG-TAGGTCTTATCCCCCTGAAGTTG
* * *
1559023 TAGTGGAGC-GAATTAAAGTAATGG---A
64 CAGTGGGGCAG-ATCAAAG--ATGGCAAA
* * * * *
1559048 TCTTATCTCTCTGAAGTTGCAGCAGAGCAGACTGAGTAAGCAGGTCTTATCCCCTTGAAGTTGCA
1 TCTTATCTCCCTGAGGTTGCAGCGGAGCAGACTGAGTAAGTAGGTCTTATCCCCCTGAAGTTGCA
*
1559113 GTGGGGCAGATCGAAGATGGCAAA
66 GTGGGGCAGATCAAAGATGGCAAA
*
1559137 TCTTATCTCCCTGAGGTTGCAGTGGAGCAGA
1 TCTTATCTCCCTGAGGTTGCAGCGGAGCAGA
1559168 TTAAAGTTGA
Statistics
Matches: 165, Mismatches: 32, Indels: 22
0.75 0.15 0.10
Matches are distributed among these distances:
86 4 0.02
87 4 0.02
88 59 0.36
89 89 0.54
90 5 0.03
91 4 0.02
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (89 bp):
TCTTATCTCCCTGAGGTTGCAGCGGAGCAGACTGAGTAAGTAGGTCTTATCCCCCTGAAGTTGCA
GTGGGGCAGATCAAAGATGGCAAA
Found at i:1559078 original size:177 final size:177
Alignment explanation
Indices: 1558871--1559244 Score: 658
Period size: 177 Copynumber: 2.1 Consensus size: 177
1558861 TCGCATCAGG
* * * *
1558871 TCTTATCTCCCTGAGGTTGCAGCGGAGCAGACTGAGTAAGTAGGTCTTATCCCCCTGAAGTTGCA
1 TCTTATCTCTCTGAAGTTGCAGCAGAGCAGACTGAGTAAGCAGGTCTTATCCCCCTGAAGTTGCA
*
1558936 GTGGGGCAGATCAAAGATGGCAAATCTTATCTCTCTGAGGTTGCAGTGGAGCAGATTAAAGTTGA
66 GTGGGGCAGATCAAAGATGGCAAATCTTATCTCCCTGAGGTTGCAGTGGAGCAGATTAAAGTTGA
*
1559001 TAATCCTATCTCCCTGAAATTGTAGTGGAGCGAATTAAAGTAATGGA
131 TAATCCTATCTCCCTGAAATTGTAGTGGAGCGAATTAAAGTAATAGA
*
1559048 TCTTATCTCTCTGAAGTTGCAGCAGAGCAGACTGAGTAAGCAGGTCTTATCCCCTTGAAGTTGCA
1 TCTTATCTCTCTGAAGTTGCAGCAGAGCAGACTGAGTAAGCAGGTCTTATCCCCCTGAAGTTGCA
*
1559113 GTGGGGCAGATCGAAGATGGCAAATCTTATCTCCCTGAGGTTGCAGTGGAGCAGATTAAAGTTGA
66 GTGGGGCAGATCAAAGATGGCAAATCTTATCTCCCTGAGGTTGCAGTGGAGCAGATTAAAGTTGA
* *
1559178 TAATCCTATCTCCCTGAAATTGTAGTGGAGGGGATTAAAGTAATAGA
131 TAATCCTATCTCCCTGAAATTGTAGTGGAGCGAATTAAAGTAATAGA
1559225 TCTTATCTCTCTGAAGTTGC
1 TCTTATCTCTCTGAAGTTGC
1559245 CGTAGAGTGG
Statistics
Matches: 187, Mismatches: 10, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
177 187 1.00
ACGTcount: A:0.27, C:0.18, G:0.26, T:0.29
Consensus pattern (177 bp):
TCTTATCTCTCTGAAGTTGCAGCAGAGCAGACTGAGTAAGCAGGTCTTATCCCCCTGAAGTTGCA
GTGGGGCAGATCAAAGATGGCAAATCTTATCTCCCTGAGGTTGCAGTGGAGCAGATTAAAGTTGA
TAATCCTATCTCCCTGAAATTGTAGTGGAGCGAATTAAAGTAATAGA
Found at i:1559205 original size:89 final size:88
Alignment explanation
Indices: 1558871--1559205 Score: 306
Period size: 89 Copynumber: 3.8 Consensus size: 88
1558861 TCGCATCAGG
* * * * * *
1558871 TCTTATCTCCCTGAGGTTGCAGCGGAGCAGACTGAG-TAAGTAGGTCTTATCCCCCTGAAGTTGC
1 TCTTATCTCCCTGAGGTTGCAGCGGAGCAGACTAAGTTGA-TA-ATCCTATCTCCCTGAAATTGC
1558935 AGTGGGGCAGATCAAAGATGGCAAA
64 AGTGGGGCAGATCAAAGATGGCAAA
* * * *
1558960 TCTTATCTCTCTGAGGTTGCAGTGGAGCAGATTAAAGTTGATAATCCTATCTCCCTGAAATTGTA
1 TCTTATCTCCCTGAGGTTGCAGCGGAGCAGACT-AAGTTGATAATCCTATCTCCCTGAAATTGCA
* *
1559025 GTGGAGC-GAATTAAAGTAATGG---A
65 GTGGGGCAG-ATCAAAG--ATGGCAAA
* * * * * ** * *
1559048 TCTTATCTCTCTGAAGTTGCAGCAGAGCAGACTGAGTAAGCA-GGTCTTATC-CCCTTGAAGTTG
1 TCTTATCTCCCTGAGGTTGCAGCGGAGCAGACTAAGT-TG-ATAATCCTATCTCCC-TGAAATTG
*
1559111 CAGTGGGGCAGATCGAAGATGGCAAA
63 CAGTGGGGCAGATCAAAGATGGCAAA
* * *
1559137 TCTTATCTCCCTGAGGTTGCAGTGGAGCAGATTAAAGTTGATAATCCTATCTCCCTGAAATTGTA
1 TCTTATCTCCCTGAGGTTGCAGCGGAGCAGACT-AAGTTGATAATCCTATCTCCCTGAAATTGCA
1559202 GTGG
65 GTGG
1559206 AGGGGATTAA
Statistics
Matches: 193, Mismatches: 38, Indels: 30
0.74 0.15 0.11
Matches are distributed among these distances:
86 4 0.02
87 6 0.03
88 58 0.30
89 109 0.56
90 10 0.05
91 6 0.03
ACGTcount: A:0.27, C:0.19, G:0.26, T:0.28
Consensus pattern (88 bp):
TCTTATCTCCCTGAGGTTGCAGCGGAGCAGACTAAGTTGATAATCCTATCTCCCTGAAATTGCAG
TGGGGCAGATCAAAGATGGCAAA
Found at i:1559288 original size:436 final size:433
Alignment explanation
Indices: 1558867--1560217 Score: 1609
Period size: 435 Copynumber: 3.1 Consensus size: 433
1558857 TGGATCGCAT
* * * * *
1558867 CAGGTCTTATCTCCCTGAGGTTGCAGCGGAGCAGACTGAG-TAAGTAGGTCTTATCCCCCTGAAG
1 CAGGTCTTATC-CCCTGAAGTTGCAGTGG-GCAGACTGAGAT-GGCAGATCTTATCCCCCTGAAG
* * * *
1558931 TTGCAGTGGGGCAGATCAAAGATGGCA-AATCTTATCTCTCTGAGGTTGCAGTGGAGCAGATTAA
63 TTGCAGTGGAGCAGATCGAAGATGG-ATAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAA
* * * * *
1558995 AGTTGATAATCCTATCTCCCTGAAATTGTAGTGGAGCGAATTAAAGTAATGGATCTTATCTCTCT
127 AG-TAATAATCCTATCTCCCTGAAATTGCAGTAGAGCGAATCAAA-TAA-GG-TCTTATCTCCCT
*
1559060 GAAGTTGCAGCAGAGCAGACTGAGTAAGCAGGTCTTATCCCCTTGAAGTTGCAGTGGGGCAGATC
188 GAAGTTGCAGTAGAGCAGACTGAGTAAGCAGGTCTTATCCCCTTGAAGTTGCAGTGGGGCAGATC
*
1559125 GAAGATGGCAAATCTTATCTCCCTGAGGTTGCAGTGGAGCAGATTAAAGTTGATAATCCTATCTC
253 GAAGATGGCAAATCTTATCTCCCTGAGGTTGCAGTGGAGCAGATTAAAGCTGATAATCCTATCTC
** * *
1559190 CCTGAAATTGTAGTGGAGGGGATTAAAGTAATAGATCTTATCTCTCTGAAGTTGCCGTAGAGTGG
318 CCTGAAATTGTAGTGGAGCAGATTAAAGTAATAGATCTTATCTCTCTGAAGTTGCAGCAGAGTGG
1559255 ATCGCATCAGGTCTTATCTCCCTGAGGTTGCAGTGGAGCAGACTGAGTAAG
383 ATCGCATCAGGTCTTATCTCCCTGAGGTTGCAGTGGAGCAGACTGAGTAAG
* ** * * * *
1559306 CAGGTCTTATCCCTCTAAAGTTGCAGTGGGGCAGATCAAAGATGGCACATCTCATCTCCCTGAGG
1 CAGGTCTTATCCC-CTGAAGTTGCAGT-GGGCAGA-CTGAGATGGCAGATCTTATCCCCCTGAAG
* * * * * *
1559371 TTGCAGTAGAGCAGATTGAAGCT-GATAATCCTATCTCCTTGAAGTTGTC-GTGGAGCGGATTAA
63 TTGCAGTGGAGCAGATCGAAGATGGATAATCTTATCTCCCTGAAGTTG-CAGTGGAGCAGATTAA
* * * * * ** * *
1559434 AGTAATAGATCTTATCTCTCTGAAGTTGCAGTAGAGTGGATCGCATCAGGTCTTATCTCCCTGAG
127 AGTAATA-ATCCTATCTCCCTGAAATTGCAGTAGAGCGAATCAAATAAGGTCTTATCTCCCTGAA
* * *
1559499 GTTACAGTGGAGCAGACTGAGTAAGCAGGACTTATCCCCTTGAAGTTGCAGTGGGGCAGATCGAA
191 GTTGCAGTAGAGCAGACTGAGTAAGCAGGTCTTATCCCCTTGAAGTTGCAGTGGGGCAGATCGAA
* * * *
1559564 GATGACAAATCTTATCTCCCTGAGTTTGCAGTGGAGCAGATTGAAGCCGATAATCCTATCTCCCT
256 GATGGCAAATCTTATCTCCCTGAGGTTGCAGTGGAGCAGATTAAAGCTGATAATCCTATCTCCCT
* * ** * *
1559629 GAAGTTGTAGCGGAGCAGATTAAAGTAACGGATCTTATCTCTATGAAGTTGCAGTAGAGTGGATC
321 GAAATTGTAGTGGAGCAGATTAAAGTAATAGATCTTATCTCTCTGAAGTTGCAGCAGAGTGGATC
* *
1559694 GCATCAGGTCTTAACTCCCTAAGGTTGCAGTGGAGCAGACTGAGTAAG
386 GCATCAGGTCTTATCTCCCTGAGGTTGCAGTGGAGCAGACTGAGTAAG
* * * * **
1559742 CAGGTCTTATCCAACTGAAGTTGTAGTGGGACAGA-TCGAAGATGGCAAATCTTATCTCCCTGCG
1 CAGGTCTTATCC-CCTGAAGTTGCAGTGGG-CAGACT-G-AGATGGCAGATCTTATCCCCCTGAA
* ** * * * *
1559806 GTTGCAGTGGAGCAGATTGAAG-CCGATAATC-CATCTCCCTGAAATTGTAGTGGAGCGGATTAA
62 GTTGCAGTGGAGCAGATCGAAGATGGATAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAA
* * * * * * ** * *
1559869 AGTAATGGATCTTATCTCTCTGAAATTGCCGTAGAGTGGATCGCATCAGGTCTTATCTCCCTGAG
127 AGTAAT-AATCCTATCTCCCTGAAATTGCAGTAGAGCGAATCAAATAAGGTCTTATCTCCCTGAA
* * * * *
1559934 GTGGTAGTGGAACAGACTGAGTAAGCAGGTCTTATCCCCTTGAAGTTGAAGTGGGGCAGATCGAA
191 GTTGCAGTAGAGCAGACTGAGTAAGCAGGTCTTATCCCCTTGAAGTTGCAGTGGGGCAGATCGAA
* *
1559999 GATGGCAAATCTTATCTCCCCGAGGTTGCAGTGGAGAAGATTAAAGCTGATAATCCTATCTCCCT
256 GATGGCAAATCTTATCTCCCTGAGGTTGCAGTGGAGCAGATTAAAGCTGATAATCCTATCTCCCT
* * *
1560064 GAAATTTTAGTGGAGCGGATTAAAGTAATAGATCTTATCTCTCTGAAGTTGCAGCAGAGTAGATC
321 GAAATTGTAGTGGAGCAGATTAAAGTAATAGATCTTATCTCTCTGAAGTTGCAGCAGAGTGGATC
* * * *
1560129 ACATCAGGTCTTATCTCCCTGAGGTTGCAGCGGAGCAGACGGAGAAAG
386 GCATCAGGTCTTATCTCCCTGAGGTTGCAGTGGAGCAGACTGAGTAAG
* *
1560177 CAAGTCTTATCCCCCTAAAGTTGCAGTGGGGCAGACTGAGA
1 CAGGTCTTAT-CCCCTGAAGTTGCAGT-GGGCAGACTGAGA
1560218 ACAGTGAACC
Statistics
Matches: 792, Mismatches: 103, Indels: 39
0.85 0.11 0.04
Matches are distributed among these distances:
434 3 0.00
435 332 0.42
436 320 0.40
437 2 0.00
438 9 0.01
439 86 0.11
440 39 0.05
441 1 0.00
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (433 bp):
CAGGTCTTATCCCCTGAAGTTGCAGTGGGCAGACTGAGATGGCAGATCTTATCCCCCTGAAGTTG
CAGTGGAGCAGATCGAAGATGGATAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGTA
ATAATCCTATCTCCCTGAAATTGCAGTAGAGCGAATCAAATAAGGTCTTATCTCCCTGAAGTTGC
AGTAGAGCAGACTGAGTAAGCAGGTCTTATCCCCTTGAAGTTGCAGTGGGGCAGATCGAAGATGG
CAAATCTTATCTCCCTGAGGTTGCAGTGGAGCAGATTAAAGCTGATAATCCTATCTCCCTGAAAT
TGTAGTGGAGCAGATTAAAGTAATAGATCTTATCTCTCTGAAGTTGCAGCAGAGTGGATCGCATC
AGGTCTTATCTCCCTGAGGTTGCAGTGGAGCAGACTGAGTAAG
Found at i:1559307 original size:218 final size:218
Alignment explanation
Indices: 1559048--1560211 Score: 1803
Period size: 218 Copynumber: 5.3 Consensus size: 218
1559038 AAGTAATGGA
* * **
1559048 TCTTATCTCTCTGAAGTTGCAGCAGAGCAGACTGAGTAAGCAGGTCTTATCCCCTTGAAGTTGCA
1 TCTTATCTCCCTGAGGTTGCAGTGGAGCAGACTGAGTAAGCAGGTCTTATCCCCTTGAAGTTGCA
* *
1559113 GTGGGGCAGATCGAAGATGGCAAATCTTATCTCCCTGAGGTTGCAGTGGAGCAGATTAAAGTTGA
66 GTGGGGCAGATCGAAGATGGCAAATCTTATCTCCCTGAGGTTGCAGTGGAGCAGATTGAAGCTGA
*
1559178 TAATCCTATCTCCCTGAAATTGTAGTGGAGGGGATTAAAGTAATAGATCTTATCTCTCTGAAGTT
131 TAATCCTATCTCCCTGAAATTGTAGTGGAGCGGATTAAAGTAATAGATCTTATCTCTCTGAAGTT
*
1559243 GCCGTAGAGTGGATCGCATCAGG
196 GCAGTAGAGTGGATCGCATCAGG
*
1559266 TCTTATCTCCCTGAGGTTGCAGTGGAGCAGACTGAGTAAGCAGGTCTTAT-CCCTCTAAAGTTGC
1 TCTTATCTCCCTGAGGTTGCAGTGGAGCAGACTGAGTAAGCAGGTCTTATCCCCT-TGAAGTTGC
* * * *
1559330 AGTGGGGCAGATCAAAGATGGCACATCTCATCTCCCTGAGGTTGCAGTAGAGCAGATTGAAGCTG
65 AGTGGGGCAGATCGAAGATGGCAAATCTTATCTCCCTGAGGTTGCAGTGGAGCAGATTGAAGCTG
* * *
1559395 ATAATCCTATCTCCTTGAAGTTGTCGTGGAGCGGATTAAAGTAATAGATCTTATCTCTCTGAAGT
130 ATAATCCTATCTCCCTGAAATTGTAGTGGAGCGGATTAAAGTAATAGATCTTATCTCTCTGAAGT
1559460 TGCAGTAGAGTGGATCGCATCAGG
195 TGCAGTAGAGTGGATCGCATCAGG
* *
1559484 TCTTATCTCCCTGAGGTTACAGTGGAGCAGACTGAGTAAGCAGGACTTATCCCCTTGAAGTTGCA
1 TCTTATCTCCCTGAGGTTGCAGTGGAGCAGACTGAGTAAGCAGGTCTTATCCCCTTGAAGTTGCA
* * *
1559549 GTGGGGCAGATCGAAGATGACAAATCTTATCTCCCTGAGTTTGCAGTGGAGCAGATTGAAGCCGA
66 GTGGGGCAGATCGAAGATGGCAAATCTTATCTCCCTGAGGTTGCAGTGGAGCAGATTGAAGCTGA
* * * ** *
1559614 TAATCCTATCTCCCTGAAGTTGTAGCGGAGCAGATTAAAGTAACGGATCTTATCTCTATGAAGTT
131 TAATCCTATCTCCCTGAAATTGTAGTGGAGCGGATTAAAGTAATAGATCTTATCTCTCTGAAGTT
1559679 GCAGTAGAGTGGATCGCATCAGG
196 GCAGTAGAGTGGATCGCATCAGG
* * * *
1559702 TCTTAACTCCCTAAGGTTGCAGTGGAGCAGACTGAGTAAGCAGGTCTTATCCAAC-TGAAGTTGT
1 TCTTATCTCCCTGAGGTTGCAGTGGAGCAGACTGAGTAAGCAGGTCTTATCC-CCTTGAAGTTGC
* * *
1559766 AGTGGGACAGATCGAAGATGGCAAATCTTATCTCCCTGCGGTTGCAGTGGAGCAGATTGAAGCCG
65 AGTGGGGCAGATCGAAGATGGCAAATCTTATCTCCCTGAGGTTGCAGTGGAGCAGATTGAAGCTG
* *
1559831 ATAATCC-ATCTCCCTGAAATTGTAGTGGAGCGGATTAAAGTAATGGATCTTATCTCTCTGAAAT
130 ATAATCCTATCTCCCTGAAATTGTAGTGGAGCGGATTAAAGTAATAGATCTTATCTCTCTGAAGT
*
1559895 TGCCGTAGAGTGGATCGCATCAGG
195 TGCAGTAGAGTGGATCGCATCAGG
* * * *
1559919 TCTTATCTCCCTGAGGTGGTAGTGGAACAGACTGAGTAAGCAGGTCTTATCCCCTTGAAGTTGAA
1 TCTTATCTCCCTGAGGTTGCAGTGGAGCAGACTGAGTAAGCAGGTCTTATCCCCTTGAAGTTGCA
* * *
1559984 GTGGGGCAGATCGAAGATGGCAAATCTTATCTCCCCGAGGTTGCAGTGGAGAAGATTAAAGCTGA
66 GTGGGGCAGATCGAAGATGGCAAATCTTATCTCCCTGAGGTTGCAGTGGAGCAGATTGAAGCTGA
*
1560049 TAATCCTATCTCCCTGAAATTTTAGTGGAGCGGATTAAAGTAATAGATCTTATCTCTCTGAAGTT
131 TAATCCTATCTCCCTGAAATTGTAGTGGAGCGGATTAAAGTAATAGATCTTATCTCTCTGAAGTT
* * *
1560114 GCAGCAGAGTAGATCACATCAGG
196 GCAGTAGAGTGGATCGCATCAGG
* * * * * *
1560137 TCTTATCTCCCTGAGGTTGCAGCGGAGCAGACGGAGAAAGCAAGTCTTATCCCCCTAAAGTTGCA
1 TCTTATCTCCCTGAGGTTGCAGTGGAGCAGACTGAGTAAGCAGGTCTTATCCCCTTGAAGTTGCA
1560202 GTGGGGCAGA
66 GTGGGGCAGA
1560212 CTGAGAACAG
Statistics
Matches: 861, Mismatches: 80, Indels: 10
0.91 0.08 0.01
Matches are distributed among these distances:
216 1 0.00
217 199 0.23
218 656 0.76
219 5 0.01
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (218 bp):
TCTTATCTCCCTGAGGTTGCAGTGGAGCAGACTGAGTAAGCAGGTCTTATCCCCTTGAAGTTGCA
GTGGGGCAGATCGAAGATGGCAAATCTTATCTCCCTGAGGTTGCAGTGGAGCAGATTGAAGCTGA
TAATCCTATCTCCCTGAAATTGTAGTGGAGCGGATTAAAGTAATAGATCTTATCTCTCTGAAGTT
GCAGTAGAGTGGATCGCATCAGG
Found at i:1559385 original size:395 final size:395
Alignment explanation
Indices: 1558653--1559469 Score: 1328
Period size: 395 Copynumber: 2.1 Consensus size: 395
1558643 TCGCATCAGG
* * * * *
1558653 TCTTATCTCCCTCAGGTTGCAGCAAAGCAGACTAAGTAAGCAGGTCTTATCCCCCTGAAGTTGTA
1 TCTTATCTCTCTGAAGTTGCAGCAGAGCAGACTAAGTAAGCAGGTCTTATCCCCCTGAAGTTGCA
* * *
1558718 GTGGGGCAGATCAAAGATGGCAAATCTTATCTCCTTGAGGTTGCAGTGGAGTAGATTGAAGCCGA
66 GTGGGGCAGATCAAAGATGGCAAATCTTATCTCCCTGAGGTTGCAGTGGAGCAGATTAAAGCCGA
* *
1558783 TAATCCTATCTCCTTGAAGTTGTAGCGGAGCGGATTAAAGTAATAGATCTTATCTCTCTGAAGTT
131 TAATCCTATCTCCCTGAAATTGTAGCGGAGCGGATTAAAGTAATAGATCTTATCTCTCTGAAGTT
*
1558848 GCAGTAGAGTGGATCGCATCAGGTCTTATCTCCCTGAGGTTGCAGCGGAGCAGACTGAGTAAGTA
196 GCAGTAGAGTGGATCGCATCAGGTCTTATCTCCCTGAGGTTGCAGCGGAGCAGACTGAGTAAGCA
* * *
1558913 GGTCTTATCCCCCTGAAGTTGCAGTGGGGCAGATCAAAGATGGCAAATCTTATCTCTCTGAGGTT
261 GGTCTTATCCCCCTAAAGTTGCAGTGGGGCAGATCAAAGATGGCAAATCTCATCTCCCTGAGGTT
* *
1558978 GCAGTGGAGCAGATTAAAGTTGATAATCCTATCTCCCTGAAATTGTAGTGGAGCGAATTAAAGTA
326 GCAGTAGAGCAGATTAAAGCTGATAATCCTATCTCCCTGAAATTGTAGTGGAGCGAATTAAAGTA
*
1559043 ATGGA
391 ATAGA
* *
1559048 TCTTATCTCTCTGAAGTTGCAGCAGAGCAGACTGAGTAAGCAGGTCTTATCCCCTTGAAGTTGCA
1 TCTTATCTCTCTGAAGTTGCAGCAGAGCAGACTAAGTAAGCAGGTCTTATCCCCCTGAAGTTGCA
* **
1559113 GTGGGGCAGATCGAAGATGGCAAATCTTATCTCCCTGAGGTTGCAGTGGAGCAGATTAAAGTTGA
66 GTGGGGCAGATCAAAGATGGCAAATCTTATCTCCCTGAGGTTGCAGTGGAGCAGATTAAAGCCGA
* *
1559178 TAATCCTATCTCCCTGAAATTGTAGTGGAGGGGATTAAAGTAATAGATCTTATCTCTCTGAAGTT
131 TAATCCTATCTCCCTGAAATTGTAGCGGAGCGGATTAAAGTAATAGATCTTATCTCTCTGAAGTT
* *
1559243 GCCGTAGAGTGGATCGCATCAGGTCTTATCTCCCTGAGGTTGCAGTGGAGCAGACTGAGTAAGCA
196 GCAGTAGAGTGGATCGCATCAGGTCTTATCTCCCTGAGGTTGCAGCGGAGCAGACTGAGTAAGCA
* *
1559308 GGTCTTATCCCTCTAAAGTTGCAGTGGGGCAGATCAAAGATGGCACATCTCATCTCCCTGAGGTT
261 GGTCTTATCCCCCTAAAGTTGCAGTGGGGCAGATCAAAGATGGCAAATCTCATCTCCCTGAGGTT
* * * * *
1559373 GCAGTAGAGCAGATTGAAGCTGATAATCCTATCTCCTTGAAGTTGTCGTGGAGCGGATTAAAGTA
326 GCAGTAGAGCAGATTAAAGCTGATAATCCTATCTCCCTGAAATTGTAGTGGAGCGAATTAAAGTA
1559438 ATAGA
391 ATAGA
*
1559443 TCTTATCTCTCTGAAGTTGCAGTAGAG
1 TCTTATCTCTCTGAAGTTGCAGCAGAG
1559470 TGGATCGCAT
Statistics
Matches: 388, Mismatches: 34, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
395 388 1.00
ACGTcount: A:0.27, C:0.19, G:0.26, T:0.28
Consensus pattern (395 bp):
TCTTATCTCTCTGAAGTTGCAGCAGAGCAGACTAAGTAAGCAGGTCTTATCCCCCTGAAGTTGCA
GTGGGGCAGATCAAAGATGGCAAATCTTATCTCCCTGAGGTTGCAGTGGAGCAGATTAAAGCCGA
TAATCCTATCTCCCTGAAATTGTAGCGGAGCGGATTAAAGTAATAGATCTTATCTCTCTGAAGTT
GCAGTAGAGTGGATCGCATCAGGTCTTATCTCCCTGAGGTTGCAGCGGAGCAGACTGAGTAAGCA
GGTCTTATCCCCCTAAAGTTGCAGTGGGGCAGATCAAAGATGGCAAATCTCATCTCCCTGAGGTT
GCAGTAGAGCAGATTAAAGCTGATAATCCTATCTCCCTGAAATTGTAGTGGAGCGAATTAAAGTA
ATAGA
Found at i:1559653 original size:613 final size:613
Alignment explanation
Indices: 1558475--1559687 Score: 1998
Period size: 613 Copynumber: 2.0 Consensus size: 613
1558465 GTTCATTATA
1558475 CAGGTCTTATCCCACTGAAGTTGCAGTGGGGCAGATCGAAGATGGAAAATCTTATCTCCCTGAGG
1 CAGGTCTTATCCCACTGAAGTTGCAGTGGGGCAGATCGAAGATGGAAAATCTTATCTCCCTGAGG
* * *
1558540 TTGCAGTGGGGCAGATTGAAGCCGATAATCCCATCTCCCTGAAGTTGTAGCGGAGCAGATTAAAG
66 TTGCAGTGGAGCAGATTAAAGCCGATAATCCCATCTCCCTGAAATTGTAGCGGAGCAGATTAAAG
1558605 TAATAGATCTTATCTCTCTGAAGTTGCAGTAGAGTGGATCGCATCAGGTCTTATCTCCCTCAGGT
131 TAATAGATCTTATCTCTCTGAAGTTGCAGTAGAGTGGATCGCATCAGGTCTTATCTCCCTCAGGT
* *
1558670 TGCAGCAAAGCAGACTAAGTAAGCAGGTCTTATCCCCCTGAAGTTGTAGTGGGGCAGATCAAAGA
196 TGCAGCAAAGCAGACTAAGTAAGCAGGTCTTATCCCCCTAAAGTTGCAGTGGGGCAGATCAAAGA
* * * *
1558735 TGGCAAATCTTATCTCCTTGAGGTTGCAGTGGAGTAGATTGAAGCCGATAATCCTATCTCCTTGA
261 TGGCAAATCTCATCTCCCTGAGGTTGCAGTAGAGCAGATTGAAGCCGATAATCCTATCTCCTTGA
1558800 AGTTGTAGCGGAGCGGATTAAAGTAATAGATCTTATCTCTCTGAAGTTGCAGTAGAGTGGATCGC
326 AGTTGTAGCGGAGCGGATTAAAGTAATAGATCTTATCTCTCTGAAGTTGCAGTAGAGTGGATCGC
* * *
1558865 ATCAGGTCTTATCTCCCTGAGGTTGCAGCGGAGCAGACTGAGTAAGTAGGTCTTATCCCCCTGAA
391 ATCAGGTCTTATCTCCCTGAGGTTACAGCGGAGCAGACTGAGTAAGCAGGACTTATCCCCCTGAA
* *
1558930 GTTGCAGTGGGGCAGATCAAAGATGGCAAATCTTATCTCTCTGAGGTTGCAGTGGAGCAGATTAA
456 GTTGCAGTGGGGCAGATCAAAGATGACAAATCTTATCTCCCTGAGGTTGCAGTGGAGCAGATTAA
** * * *
1558995 AGTTGATAATCCTATCTCCCTGAAATTGTAGTGGAGCGAATTAAAGTAATGGATCTTATCTCTCT
521 AGCCGATAATCCTATCTCCCTGAAATTGTAGCGGAGCGAATTAAAGTAACGGATCTTATCTCTAT
1559060 GAAGTTGCAGCAGAGCAGACTGAGTAAG
586 GAAGTTGCAGCAGAGCAGACTGAGTAAG
*
1559088 CAGGTCTTATCCC-CTTGAAGTTGCAGTGGGGCAGATCGAAGATGGCAAATCTTATCTCCCTGAG
1 CAGGTCTTATCCCAC-TGAAGTTGCAGTGGGGCAGATCGAAGATGGAAAATCTTATCTCCCTGAG
** * * **
1559152 GTTGCAGTGGAGCAGATTAAAGTTGATAATCCTATCTCCCTGAAATTGTAGTGGAGGGGATTAAA
65 GTTGCAGTGGAGCAGATTAAAGCCGATAATCCCATCTCCCTGAAATTGTAGCGGAGCAGATTAAA
* *
1559217 GTAATAGATCTTATCTCTCTGAAGTTGCCGTAGAGTGGATCGCATCAGGTCTTATCTCCCTGAGG
130 GTAATAGATCTTATCTCTCTGAAGTTGCAGTAGAGTGGATCGCATCAGGTCTTATCTCCCTCAGG
*** * *
1559282 TTGCAGTGGAGCAGACTGAGTAAGCAGGTCTTATCCCTCTAAAGTTGCAGTGGGGCAGATCAAAG
195 TTGCAGCAAAGCAGACTAAGTAAGCAGGTCTTATCCCCCTAAAGTTGCAGTGGGGCAGATCAAAG
* *
1559347 ATGGCACATCTCATCTCCCTGAGGTTGCAGTAGAGCAGATTGAAGCTGATAATCCTATCTCCTTG
260 ATGGCAAATCTCATCTCCCTGAGGTTGCAGTAGAGCAGATTGAAGCCGATAATCCTATCTCCTTG
* *
1559412 AAGTTGTCGTGGAGCGGATTAAAGTAATAGATCTTATCTCTCTGAAGTTGCAGTAGAGTGGATCG
325 AAGTTGTAGCGGAGCGGATTAAAGTAATAGATCTTATCTCTCTGAAGTTGCAGTAGAGTGGATCG
* *
1559477 CATCAGGTCTTATCTCCCTGAGGTTACAGTGGAGCAGACTGAGTAAGCAGGACTTATCCCCTTGA
390 CATCAGGTCTTATCTCCCTGAGGTTACAGCGGAGCAGACTGAGTAAGCAGGACTTATCCCCCTGA
* * *
1559542 AGTTGCAGTGGGGCAGATCGAAGATGACAAATCTTATCTCCCTGAGTTTGCAGTGGAGCAGATTG
455 AGTTGCAGTGGGGCAGATCAAAGATGACAAATCTTATCTCCCTGAGGTTGCAGTGGAGCAGATTA
*
1559607 AAGCCGATAATCCTATCTCCCTGAAGTTGTAGCGGAGC-AGATTAAAGTAACGGATCTTATCTCT
520 AAGCCGATAATCCTATCTCCCTGAAATTGTAGCGGAGCGA-ATTAAAGTAACGGATCTTATCTCT
*
1559671 ATGAAGTTGCAGTAGAG
584 ATGAAGTTGCAGCAGAG
1559688 TGGATCGCAT
Statistics
Matches: 554, Mismatches: 44, Indels: 4
0.92 0.07 0.01
Matches are distributed among these distances:
612 2 0.00
613 552 1.00
ACGTcount: A:0.27, C:0.19, G:0.26, T:0.28
Consensus pattern (613 bp):
CAGGTCTTATCCCACTGAAGTTGCAGTGGGGCAGATCGAAGATGGAAAATCTTATCTCCCTGAGG
TTGCAGTGGAGCAGATTAAAGCCGATAATCCCATCTCCCTGAAATTGTAGCGGAGCAGATTAAAG
TAATAGATCTTATCTCTCTGAAGTTGCAGTAGAGTGGATCGCATCAGGTCTTATCTCCCTCAGGT
TGCAGCAAAGCAGACTAAGTAAGCAGGTCTTATCCCCCTAAAGTTGCAGTGGGGCAGATCAAAGA
TGGCAAATCTCATCTCCCTGAGGTTGCAGTAGAGCAGATTGAAGCCGATAATCCTATCTCCTTGA
AGTTGTAGCGGAGCGGATTAAAGTAATAGATCTTATCTCTCTGAAGTTGCAGTAGAGTGGATCGC
ATCAGGTCTTATCTCCCTGAGGTTACAGCGGAGCAGACTGAGTAAGCAGGACTTATCCCCCTGAA
GTTGCAGTGGGGCAGATCAAAGATGACAAATCTTATCTCCCTGAGGTTGCAGTGGAGCAGATTAA
AGCCGATAATCCTATCTCCCTGAAATTGTAGCGGAGCGAATTAAAGTAACGGATCTTATCTCTAT
GAAGTTGCAGCAGAGCAGACTGAGTAAG
Found at i:1560056 original size:435 final size:436
Alignment explanation
Indices: 1559075--1560211 Score: 1826
Period size: 435 Copynumber: 2.6 Consensus size: 436
1559065 TGCAGCAGAG
1559075 CAGACTGAGTAAGCAGGTCTTATCCCCTTGAAGTTGCAGTGGGGCAGATCGAAGATGGCAAATCT
1 CAGACTGAGTAAGCAGGTCTTATCCCCTTGAAGTTGCAGTGGGGCAGATCGAAGATGGCAAATCT
*
1559140 TATCTCCCTGAGGTTGCAGTGGAGCAGATTAAAGTTGATAATCCTATCTCCCTGAAATTGTAGTG
66 TATCTCCCTGAGGTTGCAGTGGAGCAGATTAAAGCTGATAATCCTATCTCCCTGAAATTGTAGTG
* *
1559205 GAGGGGATTAAAGTAATAGATCTTATCTCTCTGAAGTTGCCGTAGAGTGGATCGCATCAGGTCTT
131 GAGCGGATTAAAGTAATAGATCTTATCTCTCTGAAGTTGCAGTAGAGTGGATCGCATCAGGTCTT
*
1559270 ATCTCCCTGAGGTTGCAGTGGAGCAGACTGAGTAAGCAGGTCTTATCCCTCTAAAGTTGCAGTGG
196 ATCTCCCTGAGGTTGCAGTGGAGCAGACTGAGTAAGCAGGTCTTATCCCACTAAAGTTGCAGTGG
* *
1559335 GGCAGATCAAAGATGGCACATCTCATCTCCCTGAGGTTGCAGTAGAGCAGATTGAAGCTGATAAT
261 GGCAGATCAAAGATGGCAAATCTCATCTCCCTGAGGTTGCAGTAGAGCAGATTGAAGCCGATAAT
* * * *
1559400 CCTATCTCCTTGAAGTTGTCGTGGAGCGGATTAAAGTAATAGATCTTATCTCTCTGAAGTTGCAG
326 CCTATCTCCCTGAAATTGTAGTGGAGCGGATTAAAGTAATAGATCTTATCTCTCTGAAATTGCAG
* *
1559465 TAGAGTGGATCGCATCAGGTCTTATCTCCCTGAGGTTACAGTGGAG
391 TAGAGTGGATCGCATCAGGTCTTATCTCCCTGAGGTGACAGTGGAA
* *
1559511 CAGACTGAGTAAGCAGGACTTATCCCCTTGAAGTTGCAGTGGGGCAGATCGAAGATGACAAATCT
1 CAGACTGAGTAAGCAGGTCTTATCCCCTTGAAGTTGCAGTGGGGCAGATCGAAGATGGCAAATCT
* * * * *
1559576 TATCTCCCTGAGTTTGCAGTGGAGCAGATTGAAGCCGATAATCCTATCTCCCTGAAGTTGTAGCG
66 TATCTCCCTGAGGTTGCAGTGGAGCAGATTAAAGCTGATAATCCTATCTCCCTGAAATTGTAGTG
* ** *
1559641 GAGCAGATTAAAGTAACGGATCTTATCTCTATGAAGTTGCAGTAGAGTGGATCGCATCAGGTCTT
131 GAGCGGATTAAAGTAATAGATCTTATCTCTCTGAAGTTGCAGTAGAGTGGATCGCATCAGGTCTT
* * * * *
1559706 AACTCCCTAAGGTTGCAGTGGAGCAGACTGAGTAAGCAGGTCTTATCCAACTGAAGTTGTAGTGG
196 ATCTCCCTGAGGTTGCAGTGGAGCAGACTGAGTAAGCAGGTCTTATCCCACTAAAGTTGCAGTGG
* * * * *
1559771 GACAGATCGAAGATGGCAAATCTTATCTCCCTGCGGTTGCAGTGGAGCAGATTGAAGCCGATAAT
261 GGCAGATCAAAGATGGCAAATCTCATCTCCCTGAGGTTGCAGTAGAGCAGATTGAAGCCGATAAT
* *
1559836 CC-ATCTCCCTGAAATTGTAGTGGAGCGGATTAAAGTAATGGATCTTATCTCTCTGAAATTGCCG
326 CCTATCTCCCTGAAATTGTAGTGGAGCGGATTAAAGTAATAGATCTTATCTCTCTGAAATTGCAG
**
1559900 TAGAGTGGATCGCATCAGGTCTTATCTCCCTGAGGTGGTAGTGGAA
391 TAGAGTGGATCGCATCAGGTCTTATCTCCCTGAGGTGACAGTGGAA
*
1559946 CAGACTGAGTAAGCAGGTCTTATCCCCTTGAAGTTGAAGTGGGGCAGATCGAAGATGGCAAATCT
1 CAGACTGAGTAAGCAGGTCTTATCCCCTTGAAGTTGCAGTGGGGCAGATCGAAGATGGCAAATCT
* * *
1560011 TATCTCCCCGAGGTTGCAGTGGAGAAGATTAAAGCTGATAATCCTATCTCCCTGAAATTTTAGTG
66 TATCTCCCTGAGGTTGCAGTGGAGCAGATTAAAGCTGATAATCCTATCTCCCTGAAATTGTAGTG
* * *
1560076 GAGCGGATTAAAGTAATAGATCTTATCTCTCTGAAGTTGCAGCAGAGTAGATCACATCAGGTCTT
131 GAGCGGATTAAAGTAATAGATCTTATCTCTCTGAAGTTGCAGTAGAGTGGATCGCATCAGGTCTT
* * * * *
1560141 ATCTCCCTGAGGTTGCAGCGGAGCAGACGGAGAAAGCAAGTCTTATCCCCCTAAAGTTGCAGTGG
196 ATCTCCCTGAGGTTGCAGTGGAGCAGACTGAGTAAGCAGGTCTTATCCCACTAAAGTTGCAGTGG
1560206 GGCAGA
261 GGCAGA
1560212 CTGAGAACAG
Statistics
Matches: 635, Mismatches: 66, Indels: 1
0.90 0.09 0.00
Matches are distributed among these distances:
435 335 0.53
436 300 0.47
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (436 bp):
CAGACTGAGTAAGCAGGTCTTATCCCCTTGAAGTTGCAGTGGGGCAGATCGAAGATGGCAAATCT
TATCTCCCTGAGGTTGCAGTGGAGCAGATTAAAGCTGATAATCCTATCTCCCTGAAATTGTAGTG
GAGCGGATTAAAGTAATAGATCTTATCTCTCTGAAGTTGCAGTAGAGTGGATCGCATCAGGTCTT
ATCTCCCTGAGGTTGCAGTGGAGCAGACTGAGTAAGCAGGTCTTATCCCACTAAAGTTGCAGTGG
GGCAGATCAAAGATGGCAAATCTCATCTCCCTGAGGTTGCAGTAGAGCAGATTGAAGCCGATAAT
CCTATCTCCCTGAAATTGTAGTGGAGCGGATTAAAGTAATAGATCTTATCTCTCTGAAATTGCAG
TAGAGTGGATCGCATCAGGTCTTATCTCCCTGAGGTGACAGTGGAA
Found at i:1560408 original size:99 final size:100
Alignment explanation
Indices: 1560217--1560400 Score: 246
Period size: 99 Copynumber: 1.9 Consensus size: 100
1560207 GCAGACTGAG
* *
1560217 AACAGTGAACCTTATCTCCCAGGCGGTCTAGTGGAACAGATTAAAGCCACAACGGAGAATCTTGC
1 AACAGTGAACCTTATCTCCCAGGCGGTCTAATGGAACAGATTAAAGCCACAACGGAGAATCTTAC
* * ** *
1560282 TTTCCTGACATTGCAGTTAAAAAGATTATTGCTAC
66 TTCCCCGACATCACAGTGAAAAAGATTATTGCTAC
* * * *
1560317 AACAGTGAATCTTATCT-CCAGGCGGTGC-AATGGAACAGATTGAAGCCATAACGGCGAATCTTA
1 AACAGTGAACCTTATCTCCCAGGCGGT-CTAATGGAACAGATTAAAGCCACAACGGAGAATCTTA
1560380 CTTCCCCGACATCACAGTGAA
65 CTTCCCCGACATCACAGTGAA
1560401 GTAGATTACA
Statistics
Matches: 72, Mismatches: 11, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
99 55 0.76
100 17 0.24
ACGTcount: A:0.32, C:0.23, G:0.21, T:0.24
Consensus pattern (100 bp):
AACAGTGAACCTTATCTCCCAGGCGGTCTAATGGAACAGATTAAAGCCACAACGGAGAATCTTAC
TTCCCCGACATCACAGTGAAAAAGATTATTGCTAC
Found at i:1561998 original size:21 final size:22
Alignment explanation
Indices: 1561956--1561998 Score: 52
Period size: 23 Copynumber: 2.0 Consensus size: 22
1561946 TATACATTGA
*
1561956 TGTTTTAAATCCATAAGGTATTT
1 TGTTTTAAAT-CATAAGATATTT
*
1561979 TGTTTTAAAT-ATAATATATT
1 TGTTTTAAATCATAAGATATT
1561999 ATTATTTATT
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
21 8 0.44
23 10 0.56
ACGTcount: A:0.35, C:0.05, G:0.09, T:0.51
Consensus pattern (22 bp):
TGTTTTAAATCATAAGATATTT
Found at i:1566182 original size:49 final size:49
Alignment explanation
Indices: 1566110--1566205 Score: 174
Period size: 49 Copynumber: 2.0 Consensus size: 49
1566100 GCAGTATGCC
*
1566110 AAATTTAGACATGAGTGAGACACCGGTTTCACCTGCTACTGAGACTGCG
1 AAATTTAGACATGAGTGAGACACCGGTTTCACCTACTACTGAGACTGCG
*
1566159 AAATTTAGACATGAGTGAGACACCGGTTTTACCTACTACTGAGACTG
1 AAATTTAGACATGAGTGAGACACCGGTTTCACCTACTACTGAGACTG
1566206 GGTCTCAAAG
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
49 45 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (49 bp):
AAATTTAGACATGAGTGAGACACCGGTTTCACCTACTACTGAGACTGCG
Found at i:1577911 original size:13 final size:13
Alignment explanation
Indices: 1577893--1577924 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
1577883 CAACCAAAAA
1577893 TAAAATGAGCACG
1 TAAAATGAGCACG
1577906 TAAAATGAGCACG
1 TAAAATGAGCACG
*
1577919 AAAAAT
1 TAAAAT
1577925 ATATGCTCTA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.53, C:0.12, G:0.19, T:0.16
Consensus pattern (13 bp):
TAAAATGAGCACG
Found at i:1578529 original size:17 final size:17
Alignment explanation
Indices: 1578509--1578543 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
1578499 TAAAATATAT
*
1578509 AAATCTAGAAAATAAAA
1 AAATCTAAAAAATAAAA
*
1578526 AAATTTAAAAAATAAAA
1 AAATCTAAAAAATAAAA
1578543 A
1 A
1578544 TAGGGCTTGG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.74, C:0.03, G:0.03, T:0.20
Consensus pattern (17 bp):
AAATCTAAAAAATAAAA
Found at i:1585237 original size:16 final size:17
Alignment explanation
Indices: 1585216--1585252 Score: 58
Period size: 16 Copynumber: 2.2 Consensus size: 17
1585206 ACTAGATAAT
*
1585216 TAAAATAAATAAACAA-
1 TAAAATAAAAAAACAAC
1585232 TAAAATAAAAAAACAAC
1 TAAAATAAAAAAACAAC
1585249 TAAA
1 TAAA
1585253 CCAATTAAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 15 0.79
17 4 0.21
ACGTcount: A:0.76, C:0.08, G:0.00, T:0.16
Consensus pattern (17 bp):
TAAAATAAAAAAACAAC
Found at i:1588777 original size:29 final size:29
Alignment explanation
Indices: 1588710--1588777 Score: 82
Period size: 29 Copynumber: 2.3 Consensus size: 29
1588700 AAATGTGTAC
*
1588710 AAGATGGGTTTTGAAAAAATAATTTTGAG
1 AAGATGGGTTCTGAAAAAATAATTTTGAG
** * *
1588739 GGGATGGGTTCTGAAGAAATAATTTTGAT
1 AAGATGGGTTCTGAAAAAATAATTTTGAG
*
1588768 AAGATTGGTT
1 AAGATGGGTT
1588778 GAGTTTTGTA
Statistics
Matches: 31, Mismatches: 8, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.35, C:0.01, G:0.28, T:0.35
Consensus pattern (29 bp):
AAGATGGGTTCTGAAAAAATAATTTTGAG
Found at i:1589200 original size:16 final size:16
Alignment explanation
Indices: 1589175--1589212 Score: 67
Period size: 16 Copynumber: 2.4 Consensus size: 16
1589165 GAAATTGAAA
*
1589175 AAGTTTAGAAGAATAG
1 AAGTTCAGAAGAATAG
1589191 AAGTTCAGAAGAATAG
1 AAGTTCAGAAGAATAG
1589207 AAGTTC
1 AAGTTC
1589213 GTAGGGAAGG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.47, C:0.05, G:0.24, T:0.24
Consensus pattern (16 bp):
AAGTTCAGAAGAATAG
Found at i:1593186 original size:100 final size:100
Alignment explanation
Indices: 1593058--1593238 Score: 344
Period size: 100 Copynumber: 1.8 Consensus size: 100
1593048 ATGTGCTTGT
*
1593058 TATCAAGACAGATTAGAGACCCGGCCATTGCTAAATATATAGTTGAACTCAAATAAATTTTTAAT
1 TATCAAGACAGATTAGAGACCCGGCCATTGCTAAATATATAGTTGAACACAAATAAATTTTTAAT
1593123 AAAAAAAACTATTTCCTGAAATTACTAATAAAAAA
66 AAAAAAAACTATTTCCTGAAATTACTAATAAAAAA
*
1593158 TATCAAGACAGATTAGAGACCCGGCCATTGCTAAATATATAGTTGAACACGAATAAATTTTTAAT
1 TATCAAGACAGATTAGAGACCCGGCCATTGCTAAATATATAGTTGAACACAAATAAATTTTTAAT
1593223 AAAAAAAACTATTTCC
66 AAAAAAAACTATTTCC
1593239 AGATGTAATC
Statistics
Matches: 79, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
100 79 1.00
ACGTcount: A:0.45, C:0.15, G:0.11, T:0.29
Consensus pattern (100 bp):
TATCAAGACAGATTAGAGACCCGGCCATTGCTAAATATATAGTTGAACACAAATAAATTTTTAAT
AAAAAAAACTATTTCCTGAAATTACTAATAAAAAA
Found at i:1593367 original size:30 final size:31
Alignment explanation
Indices: 1593311--1593396 Score: 88
Period size: 30 Copynumber: 2.9 Consensus size: 31
1593301 TTTTTTTTGT
** ** *
1593311 ATTTTAACCCCTGTACTTT-TTGAAATTTAC
1 ATTTTAACCCCTAAACTTTCTCAAAATTTAA
*
1593341 ATTTTGACCCC-AAACTTTCTCAAAA-TTAA
1 ATTTTAACCCCTAAACTTTCTCAAAATTTAA
*
1593370 ATTTTAACCCCTAAACTTTTTCAAAAT
1 ATTTTAACCCCTAAACTTTCTCAAAAT
1593397 AACGTTTCAA
Statistics
Matches: 45, Mismatches: 8, Indels: 5
0.78 0.14 0.09
Matches are distributed among these distances:
29 18 0.40
30 27 0.60
ACGTcount: A:0.34, C:0.22, G:0.03, T:0.41
Consensus pattern (31 bp):
ATTTTAACCCCTAAACTTTCTCAAAATTTAA
Found at i:1593409 original size:30 final size:29
Alignment explanation
Indices: 1593347--1593413 Score: 82
Period size: 30 Copynumber: 2.3 Consensus size: 29
1593337 TTACATTTTG
* *
1593347 ACCCCAAACTTTCTCAAAATTAAATTTTA
1 ACCCCAAACTTTTTCAAAATTAAATTTCA
*
1593376 ACCCCTAAACTTTTTCAAAA-TAACGTTTCA
1 ACCCC-AAACTTTTTCAAAATTAA-ATTTCA
1593406 ACCCCAAA
1 ACCCCAAA
1593414 AGTTTTGCTG
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
29 11 0.33
30 22 0.67
ACGTcount: A:0.40, C:0.28, G:0.01, T:0.30
Consensus pattern (29 bp):
ACCCCAAACTTTTTCAAAATTAAATTTCA
Found at i:1593910 original size:4 final size:4
Alignment explanation
Indices: 1593901--1593982 Score: 68
Period size: 4 Copynumber: 21.5 Consensus size: 4
1593891 CTGAACGGGG
* *
1593901 AAGA AAGA AAGA AAG- AAG- AAGA AAGA AAAA AAG- AAGA AAAA AGAGA
1 AAGA AAGA AAGA AAGA AAGA AAGA AAGA AAGA AAGA AAGA AAGA A-AGA
* *
1593947 AAG- AAGG AAGA AGAAA AAGA AA-A AAGA AA-A AAGA AA
1 AAGA AAGA AAGA A-AGA AAGA AAGA AAGA AAGA AAGA AA
1593983 AAGAAAAAAA
Statistics
Matches: 64, Mismatches: 7, Indels: 14
0.75 0.08 0.16
Matches are distributed among these distances:
3 18 0.28
4 40 0.62
5 6 0.09
ACGTcount: A:0.77, C:0.00, G:0.23, T:0.00
Consensus pattern (4 bp):
AAGA
Found at i:1593950 original size:13 final size:13
Alignment explanation
Indices: 1593906--1594006 Score: 74
Period size: 12 Copynumber: 7.9 Consensus size: 13
1593896 CGGGGAAGAA
*
1593906 AGAAAGAAAGAAG
1 AGAAAGAAAAAAG
1593919 AAGAAAGAAAAAA-
1 -AGAAAGAAAAAAG
1593932 AG-AAGAAAAAAG
1 AGAAAGAAAAAAG
1593944 AGAAAGAAGGAAGAAG
1 AGAAAGAA--AA-AAG
*
1593960 AAAAAGAAAAAAG
1 AGAAAGAAAAAAG
1593973 A-AAA-AAGAAAA-
1 AGAAAGAA-AAAAG
1593984 AGAAA-AAAATAAG
1 AGAAAGAAAA-AAG
1593997 A-AAA-AAAAAA
1 AGAAAGAAAAAA
1594007 AAAAAATTTT
Statistics
Matches: 76, Mismatches: 2, Indels: 21
0.77 0.02 0.21
Matches are distributed among these distances:
11 16 0.21
12 25 0.33
13 10 0.13
14 13 0.17
15 2 0.03
16 10 0.13
ACGTcount: A:0.79, C:0.00, G:0.20, T:0.01
Consensus pattern (13 bp):
AGAAAGAAAAAAG
Found at i:1593970 original size:1 final size:1
Alignment explanation
Indices: 1593960--1594012 Score: 52
Period size: 1 Copynumber: 53.0 Consensus size: 1
1593950 AAGGAAGAAG
* * * * * *
1593960 AAAAAGAAAAAAGAAAAAAGAAAAAGAAAAAAATAAGAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1594013 TTTTTTTACA
Statistics
Matches: 40, Mismatches: 12, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
1 40 1.00
ACGTcount: A:0.89, C:0.00, G:0.09, T:0.02
Consensus pattern (1 bp):
A
Found at i:1593990 original size:7 final size:7
Alignment explanation
Indices: 1593904--1594011 Score: 77
Period size: 7 Copynumber: 15.4 Consensus size: 7
1593894 AACGGGGAAG
1593904 AAAGAAA
1 AAAGAAA
1593911 GAAAG-AA
1 -AAAGAAA
*
1593918 GAAGAAA
1 AAAGAAA
1593925 GAAA-AAA
1 -AAAGAAA
1593932 AGAAGAAA
1 A-AAGAAA
1593940 AAAGAGAA
1 AAAGA-AA
*
1593948 AGAAGGAA
1 A-AAGAAA
*
1593956 GAAG-AA
1 AAAGAAA
1593962 AAAGAAA
1 AAAGAAA
1593969 AAAGAAA
1 AAAGAAA
1593976 AAAG-AA
1 AAAGAAA
1593982 AAAGAAA
1 AAAGAAA
1593989 AAA-ATAA
1 AAAGA-AA
1593996 GAAA-AAA
1 -AAAGAAA
1594003 AAA-AAA
1 AAAGAAA
1594009 AAA
1 AAA
1594012 ATTTTTTTAC
Statistics
Matches: 85, Mismatches: 5, Indels: 22
0.76 0.04 0.20
Matches are distributed among these distances:
6 25 0.29
7 38 0.45
8 19 0.22
9 3 0.04
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.01
Consensus pattern (7 bp):
AAAGAAA
Found at i:1594003 original size:20 final size:20
Alignment explanation
Indices: 1593901--1594011 Score: 109
Period size: 20 Copynumber: 5.5 Consensus size: 20
1593891 CTGAACGGGG
* *
1593901 AAGAAAGAAAGAAAGAAGAAGA
1 AAGAAAAAAAG-AAGAA-AAAA
1593923 AAGAAAAAAAGAAGAAAAAA
1 AAGAAAAAAAGAAGAAAAAA
* * * *
1593943 GAGAAAGAAGGAAGAAGAAA
1 AAGAAAAAAAGAAGAAAAAA
*
1593963 AAG-AAAAAAGAAAAAAGAAA
1 AAGAAAAAAAGAAGAAA-AAA
*
1593983 AAGAAAAAAATAAGAAAAAA
1 AAGAAAAAAAGAAGAAAAAA
1594003 AA-AAAAAAA
1 AAGAAAAAAA
1594012 ATTTTTTTAC
Statistics
Matches: 74, Mismatches: 13, Indels: 7
0.79 0.14 0.07
Matches are distributed among these distances:
19 16 0.22
20 32 0.43
21 16 0.22
22 10 0.14
ACGTcount: A:0.80, C:0.00, G:0.19, T:0.01
Consensus pattern (20 bp):
AAGAAAAAAAGAAGAAAAAA
Found at i:1594009 original size:17 final size:16
Alignment explanation
Indices: 1593912--1594011 Score: 69
Period size: 16 Copynumber: 6.2 Consensus size: 16
1593902 AGAAAGAAAG
*
1593912 AAAGAAGAAGAAAGAAAA
1 AAAGAA-AA-AAAAAAAA
* * *
1593930 AAAGAAGAAAAAAGAG
1 AAAGAAAAAAAAAAAA
** * *
1593946 AAAGAAGGAAGAAGAA
1 AAAGAAAAAAAAAAAA
*
1593962 AAAG--AAAAAAGAAA
1 AAAGAAAAAAAAAAAA
1593976 AAAGAAAAAGAAAAAAA
1 AAAGAAAAA-AAAAAAA
*
1593993 TAAGAAAAAAAAAAAA
1 AAAGAAAAAAAAAAAA
1594009 AAA
1 AAA
1594012 ATTTTTTTAC
Statistics
Matches: 64, Mismatches: 15, Indels: 8
0.74 0.17 0.09
Matches are distributed among these distances:
14 9 0.14
16 34 0.53
17 15 0.23
18 6 0.09
ACGTcount: A:0.81, C:0.00, G:0.18, T:0.01
Consensus pattern (16 bp):
AAAGAAAAAAAAAAAA
Found at i:1594249 original size:22 final size:23
Alignment explanation
Indices: 1594221--1594263 Score: 79
Period size: 22 Copynumber: 1.9 Consensus size: 23
1594211 NAGCAACACA
1594221 AAAAAAACAGCCCAA-AAGAAAG
1 AAAAAAACAGCCCAAGAAGAAAG
1594243 AAAAAAACAGCCCAAGAAGAA
1 AAAAAAACAGCCCAAGAAGAA
1594264 GCAAGAAGCA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
22 15 0.75
23 5 0.25
ACGTcount: A:0.67, C:0.19, G:0.14, T:0.00
Consensus pattern (23 bp):
AAAAAAACAGCCCAAGAAGAAAG
Found at i:1594972 original size:17 final size:16
Alignment explanation
Indices: 1594928--1594976 Score: 53
Period size: 17 Copynumber: 2.9 Consensus size: 16
1594918 TTAAAAAAAA
*
1594928 TCGTGTTTCAAAAACTT
1 TCGTGTTTC-AAAATTT
*
1594945 TCATGTCTTCAAAATTT
1 TCGTGT-TTCAAAATTT
1594962 CTCGTGTTTCAAAAT
1 -TCGTGTTTCAAAAT
1594977 AATAATAATA
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
17 19 0.70
18 8 0.30
ACGTcount: A:0.29, C:0.18, G:0.10, T:0.43
Consensus pattern (16 bp):
TCGTGTTTCAAAATTT
Found at i:1595070 original size:20 final size:19
Alignment explanation
Indices: 1595045--1595089 Score: 63
Period size: 20 Copynumber: 2.3 Consensus size: 19
1595035 TCGTGTTTCT
*
1595045 AAAATTCTTGTATTTAAAAA
1 AAAATTCGTGT-TTTAAAAA
1595065 AAAATTTCGTGTTTTAAAAA
1 AAAA-TTCGTGTTTTAAAAA
1595085 AAAAT
1 AAAAT
1595090 AAAAAGTCGT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
19 1 0.04
20 16 0.70
21 6 0.26
ACGTcount: A:0.51, C:0.04, G:0.07, T:0.38
Consensus pattern (19 bp):
AAAATTCGTGTTTTAAAAA
Found at i:1596824 original size:12 final size:12
Alignment explanation
Indices: 1596807--1596831 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
1596797 CATTCACTTG
1596807 TCATTCATTTAT
1 TCATTCATTTAT
1596819 TCATTCATTTAT
1 TCATTCATTTAT
1596831 T
1 T
1596832 GCATGTACAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.16, G:0.00, T:0.60
Consensus pattern (12 bp):
TCATTCATTTAT
Found at i:1600809 original size:1 final size:1
Alignment explanation
Indices: 1600805--1600909 Score: 57
Period size: 1 Copynumber: 105.0 Consensus size: 1
1600795 AAAAAGAGAC
* * * * * * * * * *
1600805 AAAAAAAACAACAAAAAAAAACAAAGAGACAAAAAAAAAACAAAAAAACAACAAAAAAACAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
** * * * * *
1600870 GGAAAACAAAAAACAAAAAACAAAAAAATAAAAAGAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1600910 TCAAGATGAA
Statistics
Matches: 72, Mismatches: 32, Indels: 0
0.69 0.31 0.00
Matches are distributed among these distances:
1 72 1.00
ACGTcount: A:0.84, C:0.10, G:0.05, T:0.01
Consensus pattern (1 bp):
A
Found at i:1600810 original size:13 final size:12
Alignment explanation
Indices: 1600792--1600897 Score: 71
Period size: 11 Copynumber: 8.6 Consensus size: 12
1600782 ATTATGCCTG
*
1600792 AAAAAAAAGAGAC
1 AAAAAAAACA-AC
1600805 AAAAAAAACAAC
1 AAAAAAAACAAC
1600817 AAAAAAAAACAAAGAGAC
1 -AAAAAAAAC----A-AC
1600835 AAAAAAAA-AAC
1 AAAAAAAACAAC
1600846 -AAAAAAACAAC
1 AAAAAAAACAAC
1600857 -AAAAAAACAA-
1 AAAAAAAACAAC
*
1600867 AAAGGAAAACAA-
1 AAA-AAAAACAAC
1600879 AAAACAAAA-AAC
1 AAAA-AAAACAAC
1600891 AAAAAAA
1 AAAAAAA
1600898 TAAAAAGAAA
Statistics
Matches: 79, Mismatches: 3, Indels: 24
0.75 0.03 0.23
Matches are distributed among these distances:
10 7 0.09
11 22 0.28
12 21 0.27
13 18 0.23
17 9 0.11
18 2 0.03
ACGTcount: A:0.83, C:0.11, G:0.06, T:0.00
Consensus pattern (12 bp):
AAAAAAAACAAC
Done.