Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: scaffold329
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1169685
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 72846 characters in sequence are not A, C, G, or T
File 1 of 4
Found at i:471 original size:16 final size:16
Alignment explanation
Indices: 446--480 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
436 CTTAATAGTC
*
446 AATTTTAATTTAAATT
1 AATTTAAATTTAAATT
*
462 AATTTAAATTTAATTT
1 AATTTAAATTTAAATT
478 AAT
1 AAT
481 AAAAATACTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (16 bp):
AATTTAAATTTAAATT
Found at i:476 original size:11 final size:11
Alignment explanation
Indices: 449--479 Score: 55
Period size: 10 Copynumber: 2.9 Consensus size: 11
439 AATAGTCAAT
449 TTTAATTTAAA
1 TTTAATTTAAA
460 -TTAATTTAAA
1 TTTAATTTAAA
470 TTTAATTTAA
1 TTTAATTTAA
480 TAAAAATACT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
10 10 0.53
11 9 0.47
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (11 bp):
TTTAATTTAAA
Found at i:571 original size:13 final size:14
Alignment explanation
Indices: 542--575 Score: 61
Period size: 13 Copynumber: 2.5 Consensus size: 14
532 ACATAATACT
542 AAATATTTATAAAA
1 AAATATTTATAAAA
556 AAATATTTAT-AAA
1 AAATATTTATAAAA
569 AAATATT
1 AAATATT
576 CTTTTTATAT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 10 0.50
14 10 0.50
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (14 bp):
AAATATTTATAAAA
Found at i:3014 original size:29 final size:29
Alignment explanation
Indices: 2969--3054 Score: 136
Period size: 29 Copynumber: 3.0 Consensus size: 29
2959 GGCCCCATGA
2969 CAAGTGGTATCCAAGCTATTGGTTCGAAC
1 CAAGTGGTATCCAAGCTATTGGTTCGAAC
* *
2998 CAAGTGGTATTCGAGCTATTGGTTCGAAC
1 CAAGTGGTATCCAAGCTATTGGTTCGAAC
* *
3027 CAAGTGATATCCAAACTATTGGTTCGAA
1 CAAGTGGTATCCAAGCTATTGGTTCGAA
3055 TGCACAGTTG
Statistics
Matches: 51, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 51 1.00
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.29
Consensus pattern (29 bp):
CAAGTGGTATCCAAGCTATTGGTTCGAAC
Found at i:11107 original size:14 final size:14
Alignment explanation
Indices: 11080--11121 Score: 57
Period size: 14 Copynumber: 2.9 Consensus size: 14
11070 TATCTAACTT
*
11080 AAAAACTAAGAAATA
1 AAAAAATAA-AAATA
*
11095 AATAAATAAAAATA
1 AAAAAATAAAAATA
11109 AAAAAATAAAAAT
1 AAAAAATAAAAAT
11122 CATTAAACTA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
14 17 0.71
15 7 0.29
ACGTcount: A:0.79, C:0.02, G:0.02, T:0.17
Consensus pattern (14 bp):
AAAAAATAAAAATA
Found at i:12086 original size:13 final size:13
Alignment explanation
Indices: 12070--12104 Score: 52
Period size: 13 Copynumber: 2.7 Consensus size: 13
12060 TTTAAACAAA
*
12070 TTAATTAACTTAT
1 TTAATTAACTAAT
12083 TTAATTAACTAAT
1 TTAATTAACTAAT
*
12096 TTAACTAAC
1 TTAATTAAC
12105 AGCAACTTAT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.43, C:0.11, G:0.00, T:0.46
Consensus pattern (13 bp):
TTAATTAACTAAT
Found at i:12635 original size:50 final size:52
Alignment explanation
Indices: 12510--12640 Score: 144
Period size: 50 Copynumber: 2.6 Consensus size: 52
12500 AAACTAAATG
* * * *
12510 AGTTACTTAATGCA-AGACTTAATTTAATGATGCTGACTTAAACTAACATGGG
1 AGTTACATAATGCATA-ACTTTATTTAATGATGCTGACATAAACTAACATGGA
** *
12562 AGTTACATAATGCATGTCATTATTT-ATGATGCAT-ACAT-AACTAACATGGA
1 AGTTACATAATGCATAACTTTATTTAATGATGC-TGACATAAACTAACATGGA
*
12612 AGTTACATAATGCATAACTTTATTAAATG
1 AGTTACATAATGCATAACTTTATTTAATG
12641 CAGAACACGC
Statistics
Matches: 65, Mismatches: 11, Indels: 7
0.78 0.13 0.08
Matches are distributed among these distances:
50 32 0.49
51 13 0.20
52 20 0.31
ACGTcount: A:0.38, C:0.13, G:0.15, T:0.34
Consensus pattern (52 bp):
AGTTACATAATGCATAACTTTATTTAATGATGCTGACATAAACTAACATGGA
Found at i:16369 original size:13 final size:13
Alignment explanation
Indices: 16353--16387 Score: 52
Period size: 13 Copynumber: 2.7 Consensus size: 13
16343 TTTAAACAAA
*
16353 TTAATTAACTTAT
1 TTAATTAACTAAT
16366 TTAATTAACTAAT
1 TTAATTAACTAAT
*
16379 TTAACTAAC
1 TTAATTAAC
16388 AGCAACTTAT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.43, C:0.11, G:0.00, T:0.46
Consensus pattern (13 bp):
TTAATTAACTAAT
Found at i:22516 original size:10 final size:10
Alignment explanation
Indices: 22482--22510 Score: 51
Period size: 10 Copynumber: 3.0 Consensus size: 10
22472 TCTCTTTTAA
22482 CAAAA-AATT
1 CAAAATAATT
22491 CAAAATAATT
1 CAAAATAATT
22501 CAAAATAATT
1 CAAAATAATT
22511 ATAAATTTTC
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 5 0.26
10 14 0.74
ACGTcount: A:0.62, C:0.10, G:0.00, T:0.28
Consensus pattern (10 bp):
CAAAATAATT
Found at i:33597 original size:21 final size:21
Alignment explanation
Indices: 33571--33626 Score: 85
Period size: 21 Copynumber: 2.7 Consensus size: 21
33561 AACAACGGTG
* *
33571 GCGGTGAGATTAGTTTCTGTA
1 GCGGTGAGATTAGATACTGTA
*
33592 GCGGTGAGATTGGATACTGTA
1 GCGGTGAGATTAGATACTGTA
33613 GCGGTGAGATTAGA
1 GCGGTGAGATTAGA
33627 AACAATGGTG
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 31 1.00
ACGTcount: A:0.23, C:0.09, G:0.38, T:0.30
Consensus pattern (21 bp):
GCGGTGAGATTAGATACTGTA
Found at i:44707 original size:31 final size:31
Alignment explanation
Indices: 44672--44743 Score: 81
Period size: 31 Copynumber: 2.3 Consensus size: 31
44662 TATTTAGGGT
* *
44672 TTTTCACAATGAAACTTAAATTAGGTAATTG
1 TTTTCACAATGAAACCTAAATTAGGTAATTA
* ** *
44703 TTTTCACATTGAGGCCTGAATTAGGTAATTA
1 TTTTCACAATGAAACCTAAATTAGGTAATTA
*
44734 TTCTCACAAT
1 TTTTCACAAT
44744 TGAGTTAAAA
Statistics
Matches: 33, Mismatches: 8, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.33, C:0.14, G:0.14, T:0.39
Consensus pattern (31 bp):
TTTTCACAATGAAACCTAAATTAGGTAATTA
Found at i:45611 original size:19 final size:19
Alignment explanation
Indices: 45589--45628 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
45579 TTCATTAATG
*
45589 TTAATATTTTTAGTT-TTTT
1 TTAATAATTTTA-TTATTTT
45608 TTAATAATTTTATTATTTT
1 TTAATAATTTTATTATTTT
45627 TT
1 TT
45629 CTGATTATAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 2 0.11
19 17 0.89
ACGTcount: A:0.25, C:0.00, G:0.03, T:0.72
Consensus pattern (19 bp):
TTAATAATTTTATTATTTT
Found at i:47586 original size:22 final size:22
Alignment explanation
Indices: 47540--47587 Score: 53
Period size: 23 Copynumber: 2.1 Consensus size: 22
47530 ATACTTATTC
*
47540 TTTATATAAAAATATATGTTCT
1 TTTATATAAAAATATAAGTTCT
*
47562 TTTATATGAATAAATA-AAGTTTT
1 TTTATAT-AA-AAATATAAGTTCT
47585 TTT
1 TTT
47588 TTAAGATTTG
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
22 7 0.32
23 10 0.45
24 5 0.23
ACGTcount: A:0.40, C:0.02, G:0.06, T:0.52
Consensus pattern (22 bp):
TTTATATAAAAATATAAGTTCT
Found at i:53325 original size:92 final size:92
Alignment explanation
Indices: 53168--53351 Score: 323
Period size: 92 Copynumber: 2.0 Consensus size: 92
53158 GATTATATAG
* * **
53168 ATCAAGAAAAGCAACATTCGAAATTAAATCGGGGAAATGATGAAGTCGTGGACTAAACGATCGTA
1 ATCAAGAAAAGCAACATTCGAAATTAAATCGGGGAAAGGATAAAGTCGTGGACTAAAAAATCGTA
53233 TTTCTCCGTACGAGTTTAAGGTAAGTT
66 TTTCTCCGTACGAGTTTAAGGTAAGTT
53260 ATCAAGAAAAGCAACATTCGAAATTAAATCGGGGAAAGGATAAAGTCGTGGACTAAAAAATCGTA
1 ATCAAGAAAAGCAACATTCGAAATTAAATCGGGGAAAGGATAAAGTCGTGGACTAAAAAATCGTA
*
53325 TTTCTCCGTATGAGTTTAAGGTAAGTT
66 TTTCTCCGTACGAGTTTAAGGTAAGTT
53352 TGTGTAATTA
Statistics
Matches: 87, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
92 87 1.00
ACGTcount: A:0.39, C:0.13, G:0.22, T:0.26
Consensus pattern (92 bp):
ATCAAGAAAAGCAACATTCGAAATTAAATCGGGGAAAGGATAAAGTCGTGGACTAAAAAATCGTA
TTTCTCCGTACGAGTTTAAGGTAAGTT
Found at i:80822 original size:27 final size:27
Alignment explanation
Indices: 80785--80836 Score: 104
Period size: 27 Copynumber: 1.9 Consensus size: 27
80775 AAGAAAACTA
80785 TTTTCAAACTAAGATTTTTCCACCAGT
1 TTTTCAAACTAAGATTTTTCCACCAGT
80812 TTTTCAAACTAAGATTTTTCCACCA
1 TTTTCAAACTAAGATTTTTCCACCA
80837 TTACCATGGC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.31, C:0.23, G:0.06, T:0.40
Consensus pattern (27 bp):
TTTTCAAACTAAGATTTTTCCACCAGT
Found at i:80831 original size:15 final size:15
Alignment explanation
Indices: 80785--80831 Score: 55
Period size: 15 Copynumber: 3.3 Consensus size: 15
80775 AAGAAAACTA
80785 TTTTCAAACTAAGAT
1 TTTTCAAACTAAGAT
* *
80800 TTTTC-CAC-CAG-T
1 TTTTCAAACTAAGAT
80812 TTTTCAAACTAAGAT
1 TTTTCAAACTAAGAT
80827 TTTTC
1 TTTTC
80832 CACCATTACC
Statistics
Matches: 25, Mismatches: 4, Indels: 6
0.71 0.11 0.17
Matches are distributed among these distances:
12 6 0.24
13 4 0.16
14 4 0.16
15 11 0.44
ACGTcount: A:0.30, C:0.19, G:0.06, T:0.45
Consensus pattern (15 bp):
TTTTCAAACTAAGAT
Found at i:88197 original size:39 final size:36
Alignment explanation
Indices: 88144--88219 Score: 107
Period size: 36 Copynumber: 2.0 Consensus size: 36
88134 TTTTGAAACT
*
88144 ATTAACTATTTTTTTCTTTTTGGTTACATGAACCAATTA
1 ATTAACTA-TCTTTT-TTTTT-GTTACATGAACCAATTA
*
88183 ATTAACTCTCTTTTTTTTTGTTACATGAACCAATTA
1 ATTAACTATCTTTTTTTTTGTTACATGAACCAATTA
88219 A
1 A
88220 CTTTGATTCA
Statistics
Matches: 35, Mismatches: 2, Indels: 3
0.88 0.05 0.08
Matches are distributed among these distances:
36 18 0.51
37 5 0.14
38 5 0.14
39 7 0.20
ACGTcount: A:0.29, C:0.14, G:0.07, T:0.50
Consensus pattern (36 bp):
ATTAACTATCTTTTTTTTTGTTACATGAACCAATTA
Found at i:88319 original size:27 final size:27
Alignment explanation
Indices: 88296--88359 Score: 94
Period size: 27 Copynumber: 2.4 Consensus size: 27
88286 AAATATTCTC
88296 TAAATTAAT-AAATATTAATTTATTGA
1 TAAATTAATAAAATATTAATTTATTGA
* *
88322 TAAATTAATAAAATATTCATTTATCGA
1 TAAATTAATAAAATATTAATTTATTGA
*
88349 TAAACTAATAA
1 TAAATTAATAA
88360 CTTTAAAATA
Statistics
Matches: 34, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
26 9 0.26
27 25 0.74
ACGTcount: A:0.52, C:0.05, G:0.03, T:0.41
Consensus pattern (27 bp):
TAAATTAATAAAATATTAATTTATTGA
Found at i:98947 original size:23 final size:23
Alignment explanation
Indices: 98914--98960 Score: 76
Period size: 23 Copynumber: 2.0 Consensus size: 23
98904 CGAGATTTTT
98914 GAAGAAACTGTATAAAGCCTTAG
1 GAAGAAACTGTATAAAGCCTTAG
* *
98937 GAAGAAGCTGTATAAATCCTTAG
1 GAAGAAACTGTATAAAGCCTTAG
98960 G
1 G
98961 TACAAGGTTG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.40, C:0.13, G:0.23, T:0.23
Consensus pattern (23 bp):
GAAGAAACTGTATAAAGCCTTAG
Found at i:100218 original size:32 final size:32
Alignment explanation
Indices: 100163--100301 Score: 172
Period size: 32 Copynumber: 4.4 Consensus size: 32
100153 GAATGGCTAC
* *
100163 AAGCCATAAGT-ACAGTAATATGATTGGCACA
1 AAGCCATCAGTAACAGTAATATGATCGGCACA
* *
100194 AAGCCATCAGTAGCAGTGATATGATCGGCACA
1 AAGCCATCAGTAACAGTAATATGATCGGCACA
* * **
100226 GAGCCATTAGTAATGGTAATATGATCGGCACA
1 AAGCCATCAGTAACAGTAATATGATCGGCACA
* *
100258 AAGCCATCAGTAACGGTAATATGATCGGTACA
1 AAGCCATCAGTAACAGTAATATGATCGGCACA
*
100290 ATGCCATCAGTA
1 AAGCCATCAGTA
100302 GCATCGCAGC
Statistics
Matches: 92, Mismatches: 15, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
31 10 0.11
32 82 0.89
ACGTcount: A:0.37, C:0.19, G:0.22, T:0.22
Consensus pattern (32 bp):
AAGCCATCAGTAACAGTAATATGATCGGCACA
Found at i:100320 original size:26 final size:26
Alignment explanation
Indices: 100291--100344 Score: 81
Period size: 26 Copynumber: 2.1 Consensus size: 26
100281 ATCGGTACAA
* *
100291 TGCCATCAGTAGCATCGCAGCAAAGC
1 TGCCAGCAATAGCATCGCAGCAAAGC
*
100317 TGCCAGCAATAGTATCGCAGCAAAGC
1 TGCCAGCAATAGCATCGCAGCAAAGC
100343 TG
1 TG
100345 TCCGTGTGGC
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.31, C:0.28, G:0.24, T:0.17
Consensus pattern (26 bp):
TGCCAGCAATAGCATCGCAGCAAAGC
Found at i:100387 original size:27 final size:26
Alignment explanation
Indices: 100349--100399 Score: 77
Period size: 27 Copynumber: 1.9 Consensus size: 26
100339 AAGCTGTCCG
100349 TGTGGCCAAGCCACCAGTAACAGTGAT
1 TGTGGCCAAGCCACCAGT-ACAGTGAT
100376 TGTGG-CAGAGCCACCAGTACAGTG
1 TGTGGCCA-AGCCACCAGTACAGTG
100400 CTTCCTCCAT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
26 8 0.35
27 15 0.65
ACGTcount: A:0.27, C:0.25, G:0.29, T:0.18
Consensus pattern (26 bp):
TGTGGCCAAGCCACCAGTACAGTGAT
Found at i:100515 original size:24 final size:24
Alignment explanation
Indices: 100463--100520 Score: 73
Period size: 24 Copynumber: 2.4 Consensus size: 24
100453 CCATGGTGAG
100463 AATCAGTCATACAAATCACAAACA
1 AATCAGTCATACAAATCACAAACA
* *
100487 AATCAATCATACCAATCACAGAA-A
1 AATCAGTCATACAAATCACA-AACA
*
100511 GATCAGTCAT
1 AATCAGTCAT
100521 TTACATCACG
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
24 27 0.93
25 2 0.07
ACGTcount: A:0.50, C:0.24, G:0.07, T:0.19
Consensus pattern (24 bp):
AATCAGTCATACAAATCACAAACA
Found at i:100528 original size:24 final size:24
Alignment explanation
Indices: 100477--100549 Score: 71
Period size: 24 Copynumber: 3.0 Consensus size: 24
100467 AGTCATACAA
*
100477 ATCACAAACAAATCAATCA--TACC
1 ATCACAGACAAATCAATCATTTA-C
*
100500 AATCACAGA-AAGATCAGTCATTTAC
1 -ATCACAGACAA-ATCAATCATTTAC
*
100525 ATCACGGACAAATCAATCATTTAC
1 ATCACAGACAAATCAATCATTTAC
100549 A
1 A
100550 CTCGAGGGGC
Statistics
Matches: 41, Mismatches: 4, Indels: 8
0.77 0.08 0.15
Matches are distributed among these distances:
23 2 0.05
24 34 0.83
25 3 0.07
26 2 0.05
ACGTcount: A:0.47, C:0.25, G:0.07, T:0.22
Consensus pattern (24 bp):
ATCACAGACAAATCAATCATTTAC
Found at i:100641 original size:27 final size:27
Alignment explanation
Indices: 100611--100950 Score: 285
Period size: 27 Copynumber: 12.6 Consensus size: 27
100601 CTTACAAGGA
* *
100611 TATTTCGGTTATTTAACCCTATAG-GGG
1 TATTTCGGTCATTTTACCC-ATAGAGGG
* *
100638 TATTACGGTCATTTTACCC-TACAGGGG
1 TATTTCGGTCATTTTACCCATAGA-GGG
* * * *
100665 CATTACGGTCATTTTACCTATTGAGGG
1 TATTTCGGTCATTTTACCCATAGAGGG
* * *
100692 TATTTCGGTAATTTTACCCCTCGAGGG
1 TATTTCGGTCATTTTACCCATAGAGGG
* *
100719 TATTTCGATCATTTTACCCATCGAGGG
1 TATTTCGGTCATTTTACCCATAGAGGG
* *
100746 TATTTCAGTAATTTTACCCATCA-AGGG
1 TATTTCGGTCATTTTACCCAT-AGAGGG
* *
100773 TATTTCAGTCATTTTACCCATCGAGGG
1 TATTTCGGTCATTTTACCCATAGAGGG
* * * * *
100800 TATTTCGATCATTTTATCGATTGGGGG
1 TATTTCGGTCATTTTACCCATAGAGGG
** * *
100827 TATTTTAGTAATTTTACCCATCGAGGG
1 TATTTCGGTCATTTTACCCATAGAGGG
*
100854 TATTTCGATCATTTTACCCATCA-AGGG
1 TATTTCGGTCATTTTACCCAT-AGAGGG
* * * * *
100881 TAATTCGATCATTTTACCCTTTGGGGG
1 TATTTCGGTCATTTTACCCATAGAGGG
* *
100908 TAATTCGGTCATTTTACCCTTTAG-GGG
1 TATTTCGGTCATTTTACCC-ATAGAGGG
*
100935 TAATTCGGTCATTTTA
1 TATTTCGGTCATTTTA
100951 TCCTATAGGA
Statistics
Matches: 257, Mismatches: 48, Indels: 16
0.80 0.15 0.05
Matches are distributed among these distances:
25 2 0.01
27 250 0.97
28 5 0.02
ACGTcount: A:0.22, C:0.19, G:0.20, T:0.39
Consensus pattern (27 bp):
TATTTCGGTCATTTTACCCATAGAGGG
Found at i:100731 original size:54 final size:55
Alignment explanation
Indices: 100591--100950 Score: 317
Period size: 54 Copynumber: 6.7 Consensus size: 55
100581 GGGCATTATT
* * * * * *
100591 GTCATTTTA-CCTTACAAGGATATTTCG-GTTATTTAACCCTATAG-GGGTATTACG
1 GTCATTTTACCCAT-CAAGGGTATTTCGAGTCATTTTACCC-ATCGAGGGTATTTCG
* * * * *
100645 GTCATTTTACCC-TACAGGGGCATTACG-GTCATTTTACCTATTGAGGGTATTTCG
1 GTCATTTTACCCAT-CAAGGGTATTTCGAGTCATTTTACCCATCGAGGGTATTTCG
* * * *
100699 GTAATTTTACCCCTCGAGGGTATTTCGA-TCATTTTACCCATCGAGGGTATTTCA
1 GTCATTTTACCCATCAAGGGTATTTCGAGTCATTTTACCCATCGAGGGTATTTCG
*
100753 GTAATTTTACCCATCAAGGGTATTTC-AGTCATTTTACCCATCGAGGGTATTTCG
1 GTCATTTTACCCATCAAGGGTATTTCGAGTCATTTTACCCATCGAGGGTATTTCG
* * * *** * *
100807 ATCATTTTATCGATTGGGGGTATTT-TAGTAATTTTACCCATCGAGGGTATTTCG
1 GTCATTTTACCCATCAAGGGTATTTCGAGTCATTTTACCCATCGAGGGTATTTCG
* * * * * *
100861 ATCATTTTACCCATCAAGGGTAATTCGA-TCATTTTACCCTTTGGGGGTAATTCG
1 GTCATTTTACCCATCAAGGGTATTTCGAGTCATTTTACCCATCGAGGGTATTTCG
* * * *
100915 GTCATTTTACCCTTTAGGGGTAATTCG-GTCATTTTA
1 GTCATTTTACCCATCAAGGGTATTTCGAGTCATTTTA
100951 TCCTATAGGA
Statistics
Matches: 254, Mismatches: 44, Indels: 16
0.81 0.14 0.05
Matches are distributed among these distances:
53 4 0.02
54 246 0.97
55 4 0.02
ACGTcount: A:0.23, C:0.19, G:0.20, T:0.39
Consensus pattern (55 bp):
GTCATTTTACCCATCAAGGGTATTTCGAGTCATTTTACCCATCGAGGGTATTTCG
Found at i:100760 original size:81 final size:81
Alignment explanation
Indices: 100675--100950 Score: 329
Period size: 81 Copynumber: 3.4 Consensus size: 81
100665 CATTACGGTC
* * * *
100675 ATTTTACCTATTGAGGGTATTTCGGTAATTTTACCCCTCGAGGGTATTTCGATCATTTTACCCAT
1 ATTTTACCCATCGAGGGTATTTCGGTCATTTTACCCATCGAGGGTATTTCGATCATTTTACCCAT
100740 CGAGGGTATTTCAGTA
66 CGAGGGTATTTCAGTA
* * * *
100756 ATTTTACCCATCAAGGGTATTTCAGTCATTTTACCCATCGAGGGTATTTCGATCATTTTATCGAT
1 ATTTTACCCATCGAGGGTATTTCGGTCATTTTACCCATCGAGGGTATTTCGATCATTTTACCCAT
* * *
100821 TGGGGGTATTTTAGTA
66 CGAGGGTATTTCAGTA
* * * *
100837 ATTTTACCCATCGAGGGTATTTCGATCATTTTACCCATCAAGGGTAATTCGATCATTTTACCCTT
1 ATTTTACCCATCGAGGGTATTTCGGTCATTTTACCCATCGAGGGTATTTCGATCATTTTACCCAT
* * * * *
100902 TGGGGGTAATTCGGTC
66 CGAGGGTATTTCAGTA
** *
100918 ATTTTACCC-TTTAGGGGTAATTCGGTCATTTTA
1 ATTTTACCCATCGA-GGGTATTTCGGTCATTTTA
100951 TCCTATAGGA
Statistics
Matches: 167, Mismatches: 27, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
80 2 0.01
81 165 0.99
ACGTcount: A:0.22, C:0.18, G:0.20, T:0.40
Consensus pattern (81 bp):
ATTTTACCCATCGAGGGTATTTCGGTCATTTTACCCATCGAGGGTATTTCGATCATTTTACCCAT
CGAGGGTATTTCAGTA
Found at i:100959 original size:27 final size:26
Alignment explanation
Indices: 100591--101002 Score: 189
Period size: 27 Copynumber: 15.3 Consensus size: 26
100581 GGGCATTATT
* * * *
100591 GTCATTTTACCTTACAAGGATATTTCG
1 GTCATTTTACC-TATAGGGGTAATTCG
* *
100618 GTTATTTAACCCTATAGGGGT-ATTACG
1 GTCATTTTA-CCTATAGGGGTAATT-CG
* *
100645 GTCATTTTACCCTACAGGGG-CATTACG
1 GTCATTTTA-CCTATAGGGGTAATT-CG
* *
100672 GTCATTTTACCTATTGAGGGTATTTCG
1 GTCATTTTACCTATAG-GGGTAATTCG
* ** * *
100699 GTAATTTTACCCCTCGAGGGTATTTCG
1 GTCATTTTACCTATAG-GGGTAATTCG
* * * * *
100726 ATCATTTTACCCATCGAGGGTATTTCA
1 GTCATTTTACCTATAG-GGGTAATTCG
* * * * *
100753 GTAATTTTACCCATCAAGGGTATTTCA
1 GTCATTTTACCTAT-AGGGGTAATTCG
* * *
100780 GTCATTTTACCCATCGAGGGTATTTCG
1 GTCATTTTACCTATAG-GGGTAATTCG
* * * * * **
100807 ATCATTTTATCGATTGGGGGTATTTTA
1 GTCATTTTACCTA-TAGGGGTAATTCG
* * * *
100834 GTAATTTTACCCATCGAGGGTATTTCG
1 GTCATTTTACCTATAG-GGGTAATTCG
* * *
100861 ATCATTTTACCCATCAAGGGTAATTCG
1 GTCATTTTACCTAT-AGGGGTAATTCG
* * *
100888 ATCATTTTACCCTTTGGGGGTAATTCG
1 GTCATTTTA-CCTATAGGGGTAATTCG
*
100915 GTCATTTTACCCTTTAGGGGTAATTCG
1 GTCATTTTA-CCTATAGGGGTAATTCG
* *
100942 GTCATTTTATCCTATAGGAGTAATTTG
1 GTCATTTTA-CCTATAGGGGTAATTCG
* * * *
100969 GTCACTTTACCTCTCGGGGGTAATTCA
1 GTCATTTTACCTAT-AGGGGTAATTCG
100996 GTCATTT
1 GTCATTT
101003 AACAAACATT
Statistics
Matches: 309, Mismatches: 64, Indels: 24
0.78 0.16 0.06
Matches are distributed among these distances:
26 13 0.04
27 287 0.93
28 9 0.03
ACGTcount: A:0.23, C:0.19, G:0.20, T:0.39
Consensus pattern (26 bp):
GTCATTTTACCTATAGGGGTAATTCG
Found at i:100965 original size:54 final size:54
Alignment explanation
Indices: 100591--101002 Score: 213
Period size: 54 Copynumber: 7.6 Consensus size: 54
100581 GGGCATTATT
* * * * * *
100591 GTCATTTTA-CCTTACAAGGATATTTCGGTTATTTAACCCTATAGGGGT-ATTACG
1 GTCATTTTACCCTT-CAGGGGTAATTCGGTCATTTTACCCTATAGGAGTAATT-CG
* * *
100645 GTCATTTTACCCTACAGGGG-CATTACGGTCATTTTA-CCTATTGAGG-GTATTTCG
1 GTCATTTTACCCTTCAGGGGTAATT-CGGTCATTTTACCCTA-T-AGGAGTAATTCG
* * * * * *
100699 GTAATTTTACCCCTC-GAGGGTATTTCGATCATTTTACCC-ATCGAGG-GTATTTCA
1 GTCATTTTACCCTTCAG-GGGTAATTCGGTCATTTTACCCTAT--AGGAGTAATTCG
* * * * * *
100753 GTAATTTTACCCATCAAGGGTATTTCAGTCATTTTACCC-ATCGAGG-GTATTTCG
1 GTCATTTTACCCTTCAGGGGTAATTCGGTCATTTTACCCTAT--AGGAGTAATTCG
* ** * * ** * *
100807 ATCATTTTATCGATT-GGGGGTATTTTAGTAATTTTACCC-ATCGAGG-GTATTTCG
1 GTCATTTTA-CCCTTCAGGGGTAATTCGGTCATTTTACCCTAT--AGGAGTAATTCG
* * * * * * *
100861 ATCATTTTACCCATCAAGGGTAATTCGATCATTTTACCCTTTGGGGGTAATTCG
1 GTCATTTTACCCTTCAGGGGTAATTCGGTCATTTTACCCTATAGGAGTAATTCG
* * *
100915 GTCATTTTACCCTTTAGGGGTAATTCGGTCATTTTATCCTATAGGAGTAATTTG
1 GTCATTTTACCCTTCAGGGGTAATTCGGTCATTTTACCCTATAGGAGTAATTCG
* * *
100969 GTCACTTTA-CCTCTCGGGGGTAATTCAGTCATTT
1 GTCATTTTACCCT-TCAGGGGTAATTCGGTCATTT
101003 AACAAACATT
Statistics
Matches: 287, Mismatches: 56, Indels: 30
0.77 0.15 0.08
Matches are distributed among these distances:
53 15 0.05
54 257 0.90
55 15 0.05
ACGTcount: A:0.23, C:0.19, G:0.20, T:0.39
Consensus pattern (54 bp):
GTCATTTTACCCTTCAGGGGTAATTCGGTCATTTTACCCTATAGGAGTAATTCG
Found at i:100965 original size:81 final size:81
Alignment explanation
Indices: 100672--101002 Score: 307
Period size: 81 Copynumber: 4.1 Consensus size: 81
100662 GGGCATTACG
* * *
100672 GTCATTTTA-CCTATT-GAGGGTATTTCGGTAATTTTACCCCTCGAGGGTATTTCGATCATTTTA
1 GTCATTTTACCCT-TTAGAGGGTATTTCGGTCATTTTACCCATC-AGGGTAATTCGATCATTTTA
* *
100735 CCCATCGAGGGTATTTCA
64 CCCATCGGGGGTAATTCA
* * * * * *
100753 GTAATTTTACCCATCA-AGGGTATTTCAGTCATTTTACCCATCGAGGGTATTTCGATCATTTTAT
1 GTCATTTTACCCTTTAGAGGGTATTTCGGTCATTTTACCCATC-AGGGTAATTCGATCATTTTAC
* * * *
100817 CGATTGGGGGTATTTTA
65 CCATCGGGGGTAATTCA
* * * *
100834 GTAATTTTACCC-ATCGAGGGTATTTCGATCATTTTACCCATCAAGGGTAATTCGATCATTTTAC
1 GTCATTTTACCCTTTAGAGGGTATTTCGGTCATTTTACCCATC-AGGGTAATTCGATCATTTTAC
* * *
100898 CCTTTGGGGGTAATTCG
65 CCATCGGGGGTAATTCA
* * * * *
100915 GTCATTTTACCCTTTAG-GGGTAATTCGGTCATTTTATCCTAT-AGGAGTAATTTGGTCACTTTA
1 GTCATTTTACCCTTTAGAGGGTATTTCGGTCATTTTA-CCCATCAGG-GTAATTCGATCATTTTA
100978 CCTC-TCGGGGGTAATTCA
64 CC-CATCGGGGGTAATTCA
100996 GTCATTT
1 GTCATTT
101003 AACAAACATT
Statistics
Matches: 208, Mismatches: 35, Indels: 14
0.81 0.14 0.05
Matches are distributed among these distances:
80 3 0.01
81 196 0.94
82 9 0.04
ACGTcount: A:0.22, C:0.18, G:0.20, T:0.40
Consensus pattern (81 bp):
GTCATTTTACCCTTTAGAGGGTATTTCGGTCATTTTACCCATCAGGGTAATTCGATCATTTTACC
CATCGGGGGTAATTCA
Found at i:109146 original size:28 final size:28
Alignment explanation
Indices: 109114--109167 Score: 99
Period size: 28 Copynumber: 1.9 Consensus size: 28
109104 ATATATATGT
*
109114 TATAAAATTAAAAGAAATATAGAATGAA
1 TATAAAACTAAAAGAAATATAGAATGAA
109142 TATAAAACTAAAAGAAATATAGAATG
1 TATAAAACTAAAAGAAATATAGAATG
109168 GACAATAGAG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.63, C:0.02, G:0.11, T:0.24
Consensus pattern (28 bp):
TATAAAACTAAAAGAAATATAGAATGAA
Found at i:110963 original size:26 final size:26
Alignment explanation
Indices: 110934--111097 Score: 112
Period size: 26 Copynumber: 6.5 Consensus size: 26
110924 ACCTCTCTCA
110934 AGCCATATAAT-AGGAAGCTCACAAAG
1 AGCCAT-TAATCAGGAAGCTCACAAAG
*
110960 AGCCATTAATCGGGAAGCTCACAAAG
1 AGCCATTAATCAGGAAGCTCACAAAG
* *
110986 AGCC--T-ATCAGGAAGCTTATC--CG
1 AGCCATTAATCAGGAAGCTCA-CAAAG
* * *
111008 GGCTATATAA-CAGGAAGCTCA-TAAG
1 AGCCAT-TAATCAGGAAGCTCACAAAG
** *
111033 AGCCA-TAATCAGGAATTTCACAAAT
1 AGCCATTAATCAGGAAGCTCACAAAG
* ** *
111058 AACTTTTAATCAGGAAGCTCACGAAG
1 AGCCATTAATCAGGAAGCTCACAAAG
*
111084 AGCCTTTAATCAGG
1 AGCCATTAATCAGG
111098 TGCTTCGGAT
Statistics
Matches: 104, Mismatches: 23, Indels: 22
0.70 0.15 0.15
Matches are distributed among these distances:
22 3 0.03
23 14 0.13
24 11 0.11
25 23 0.22
26 53 0.51
ACGTcount: A:0.38, C:0.21, G:0.20, T:0.21
Consensus pattern (26 bp):
AGCCATTAATCAGGAAGCTCACAAAG
Found at i:117758 original size:26 final size:26
Alignment explanation
Indices: 117729--117851 Score: 84
Period size: 26 Copynumber: 5.0 Consensus size: 26
117719 ACCTCTCTCA
117729 AGCCATATAACAGGAAGCTCACAAAG
1 AGCCATATAACAGGAAGCTCACAAAG
*
117755 AGCCAT-TAATCTA-GAAGCTCAAAAAG
1 AGCCATATAA-C-AGGAAGCTCACAAAG
* *
117781 AGCC-TAT--CAGGAAGCTTATC--TG
1 AGCCATATAACAGGAAGCTCA-CAAAG
* * *
117803 GGCTATATAACAGGAAGCTCA-TAAG
1 AGCCATATAACAGGAAGCTCACAAAG
* *
117828 AGCCATA-ATCAGGAAGTTCACAAA
1 AGCCATATAACAGGAAGCTCACAAA
117852 TAACTTTTAA
Statistics
Matches: 73, Mismatches: 13, Indels: 23
0.67 0.12 0.21
Matches are distributed among these distances:
22 4 0.05
23 11 0.15
24 11 0.15
25 22 0.30
26 24 0.33
27 1 0.01
ACGTcount: A:0.41, C:0.20, G:0.20, T:0.19
Consensus pattern (26 bp):
AGCCATATAACAGGAAGCTCACAAAG
Found at i:134762 original size:9 final size:9
Alignment explanation
Indices: 134744--134780 Score: 56
Period size: 9 Copynumber: 4.1 Consensus size: 9
134734 TATAGTTTAA
*
134744 TATTCAAAT
1 TATTCGAAT
134753 TATTCGAAT
1 TATTCGAAT
*
134762 TATTCGAGT
1 TATTCGAAT
134771 TATTCGAAT
1 TATTCGAAT
134780 T
1 T
134781 CGAAAACTCA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
9 25 1.00
ACGTcount: A:0.32, C:0.11, G:0.11, T:0.46
Consensus pattern (9 bp):
TATTCGAAT
Found at i:137333 original size:27 final size:27
Alignment explanation
Indices: 137295--137446 Score: 223
Period size: 27 Copynumber: 5.6 Consensus size: 27
137285 ATTCGTGGGC
* *
137295 AAATGACTGAAATACCCTCGATGCGTA
1 AAATGACCGAAATACCCTCGATGGGTA
137322 AAATGACCGAAATACCCTCGATGGGTA
1 AAATGACCGAAATACCCTCGATGGGTA
137349 AAATGACCGAAATACCCTCGATGGGTA
1 AAATGACCGAAATACCCTCGATGGGTA
** *
137376 AAATGATTGAAATACCCTCAATGGGTA
1 AAATGACCGAAATACCCTCGATGGGTA
* **
137403 AATTGACCGAAATACCCTCGAAAGGTA
1 AAATGACCGAAATACCCTCGATGGGTA
*
137430 AAATTACCGAAATACCC
1 AAATGACCGAAATACCC
137447 CCATAAGGTA
Statistics
Matches: 112, Mismatches: 13, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 112 1.00
ACGTcount: A:0.39, C:0.22, G:0.18, T:0.20
Consensus pattern (27 bp):
AAATGACCGAAATACCCTCGATGGGTA
Found at i:137457 original size:81 final size:81
Alignment explanation
Indices: 137295--137465 Score: 236
Period size: 81 Copynumber: 2.1 Consensus size: 81
137285 ATTCGTGGGC
* **
137295 AAATGACTGAAATACCCTCGATGCGTAAAATGACCGAAATACCCTCGATGGGTAAAATGACCGAA
1 AAATGACTGAAATACCCTCAATGCGTAAAATGACCGAAATACCCTCGAAAGGTAAAATGACCGAA
* *
137360 ATACCCTCGATGGGTA
66 ATACCCTCCATAGGTA
* * * *
137376 AAATGATTGAAATACCCTCAATGGGTAAATTGACCGAAATACCCTCGAAAGGTAAAATTACCGAA
1 AAATGACTGAAATACCCTCAATGCGTAAAATGACCGAAATACCCTCGAAAGGTAAAATGACCGAA
137441 ATACCC-CCATAAGGTA
66 ATACCCTCCAT-AGGTA
*
137457 AAATAACTG
1 AAATGACTG
137466 TTATACCCCT
Statistics
Matches: 78, Mismatches: 11, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
80 3 0.04
81 75 0.96
ACGTcount: A:0.40, C:0.21, G:0.18, T:0.20
Consensus pattern (81 bp):
AAATGACTGAAATACCCTCAATGCGTAAAATGACCGAAATACCCTCGAAAGGTAAAATGACCGAA
ATACCCTCCATAGGTA
Found at i:137668 original size:26 final size:26
Alignment explanation
Indices: 137639--137701 Score: 108
Period size: 26 Copynumber: 2.4 Consensus size: 26
137629 TTTGCCACAT
137639 ATACTGTTACTAGCAGCTTTACTGAA
1 ATACTGTTACTAGCAGCTTTACTGAA
*
137665 ATACTGTTACTAGCAGCTTTACTGCA
1 ATACTGTTACTAGCAGCTTTACTGAA
*
137691 TTACTGTTACT
1 ATACTGTTACT
137702 GACCGCTTTG
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 35 1.00
ACGTcount: A:0.27, C:0.21, G:0.14, T:0.38
Consensus pattern (26 bp):
ATACTGTTACTAGCAGCTTTACTGAA
Found at i:137709 original size:26 final size:26
Alignment explanation
Indices: 137640--137732 Score: 107
Period size: 26 Copynumber: 3.6 Consensus size: 26
137630 TTGCCACATA
* *
137640 TACTGTTACTAGCAGCTTTACTGAAA
1 TACTGTTACTAGCAGCTTTACTGCAT
137666 TACTGTTACTAGCAGCTTTACTGCAT
1 TACTGTTACTAGCAGCTTTACTGCAT
* *
137692 TACTGTTACT-GACCGCTTTGCTGCAT
1 TACTGTTACTAG-CAGCTTTACTGCAT
* * *
137718 CACTATTACTCGCAG
1 TACTGTTACTAGCAG
137733 ATTTGTTGCG
Statistics
Matches: 58, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
25 1 0.02
26 56 0.97
27 1 0.02
ACGTcount: A:0.24, C:0.25, G:0.16, T:0.35
Consensus pattern (26 bp):
TACTGTTACTAGCAGCTTTACTGCAT
Found at i:137956 original size:54 final size:55
Alignment explanation
Indices: 137852--137963 Score: 154
Period size: 54 Copynumber: 2.0 Consensus size: 55
137842 CATTGTACTC
* **
137852 TTACTGTATTGGGCTATGGCCCATACTATTACTATATGGGGCTAAGGCCCACACTG
1 TTACTATATTGGGCTAAAGCCCA-ACTATTACTATATGGGGCTAAGGCCCACACTG
* * *
137908 TTACTATATTGGGCTAAAGCCC-ACTATTATTGTATTGGGCTAAGGCCCACACTG
1 TTACTATATTGGGCTAAAGCCCAACTATTACTATATGGGGCTAAGGCCCACACTG
137962 TT
1 TT
137964 GCTGTATAGT
Statistics
Matches: 50, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
54 31 0.62
56 19 0.38
ACGTcount: A:0.24, C:0.22, G:0.21, T:0.32
Consensus pattern (55 bp):
TTACTATATTGGGCTAAAGCCCAACTATTACTATATGGGGCTAAGGCCCACACTG
Found at i:137970 original size:28 final size:28
Alignment explanation
Indices: 137852--137989 Score: 136
Period size: 28 Copynumber: 5.0 Consensus size: 28
137842 CATTGTACTC
* * *
137852 TTACTGTATTGGGCTATGGCCCATACTA
1 TTACTGTATTGGGCTAAGGCCCACACTG
* *
137880 TTACTATATGGGGCTAAGGCCCACACTG
1 TTACTGTATTGGGCTAAGGCCCACACTG
* * *
137908 TTACTATATTGGGCTAAAG-CC-CACTA
1 TTACTGTATTGGGCTAAGGCCCACACTG
*
137934 TTATTGTATTGGGCTAAGGCCCACACTG
1 TTACTGTATTGGGCTAAGGCCCACACTG
* * * * *
137962 TTGCTGTATAGTGCTCAGGCCCAGACTG
1 TTACTGTATTGGGCTAAGGCCCACACTG
137990 CCACTGCATG
Statistics
Matches: 90, Mismatches: 18, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
26 20 0.22
27 4 0.04
28 66 0.73
ACGTcount: A:0.23, C:0.23, G:0.23, T:0.30
Consensus pattern (28 bp):
TTACTGTATTGGGCTAAGGCCCACACTG
Found at i:146064 original size:27 final size:27
Alignment explanation
Indices: 146026--146168 Score: 180
Period size: 27 Copynumber: 5.3 Consensus size: 27
146016 ATTCGTGGGC
*
146026 AAATGACTGAAATACCCTCGATAGATA
1 AAATGACTGAAATACCCTCGATAGGTA
*
146053 AAATGACTGAAATACCCTCGATGGGTA
1 AAATGACTGAAATACCCTCGATAGGTA
* *
146080 AAATGATTGAAATACCCTCGATGGGTA
1 AAATGACTGAAATACCCTCGATAGGTA
* * *
146107 AAATGACCGAAATACCCTAGAAAGGTA
1 AAATGACTGAAATACCCTCGATAGGTA
* * *
146134 AAATAACCGAAATACCCCCG-TAGGGTA
1 AAATGACTGAAATACCCTCGATA-GGTA
146161 AAATGACT
1 AAATGACT
146169 ATTATACCCT
Statistics
Matches: 101, Mismatches: 14, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
26 1 0.01
27 100 0.99
ACGTcount: A:0.42, C:0.19, G:0.19, T:0.20
Consensus pattern (27 bp):
AAATGACTGAAATACCCTCGATAGGTA
Found at i:146404 original size:26 final size:26
Alignment explanation
Indices: 146375--146442 Score: 118
Period size: 26 Copynumber: 2.6 Consensus size: 26
146365 TGTGTTACTG
146375 TTACTGGCAGCTTTGCTGCATCATTA
1 TTACTGGCAGCTTTGCTGCATCATTA
* *
146401 TTACTGGCAGCTTTACTGCGTCATTA
1 TTACTGGCAGCTTTGCTGCATCATTA
146427 TTACTGGCAGCTTTGC
1 TTACTGGCAGCTTTGC
146443 AGCAATATTG
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 39 1.00
ACGTcount: A:0.18, C:0.24, G:0.21, T:0.38
Consensus pattern (26 bp):
TTACTGGCAGCTTTGCTGCATCATTA
Found at i:159219 original size:44 final size:44
Alignment explanation
Indices: 159156--159296 Score: 183
Period size: 53 Copynumber: 3.0 Consensus size: 44
159146 TATATGTATC
* *
159156 CACATTATAACAGACCAAAATTGAAGTTGAAGGTTTTAACTGCG
1 CACATTATAACGGACCAAAATTGAAGTTCAAGGTTTTAACTGCG
159200 CACATTATAACGGACCAAAATTGAAGTTCAAGGTTTTAACCGCACACATTGCG
1 CACATTATAACGGACCAAAATTGAAGTTCAAGGTTTT------A-AC--TGCG
159253 CACATTATAACGGACCAAAATTGAAGTTCAAGGTTTTAACTGCG
1 CACATTATAACGGACCAAAATTGAAGTTCAAGGTTTTAACTGCG
159297 GAAACCGTGT
Statistics
Matches: 86, Mismatches: 2, Indels: 18
0.81 0.02 0.17
Matches are distributed among these distances:
44 39 0.45
46 2 0.02
47 1 0.01
50 1 0.01
51 2 0.02
53 41 0.48
ACGTcount: A:0.37, C:0.19, G:0.18, T:0.26
Consensus pattern (44 bp):
CACATTATAACGGACCAAAATTGAAGTTCAAGGTTTTAACTGCG
Found at i:161429 original size:34 final size:34
Alignment explanation
Indices: 161377--161444 Score: 100
Period size: 34 Copynumber: 2.0 Consensus size: 34
161367 TCATTTGAAG
161377 ACCAGCTTATTCTCTCACATTAAAGAGTCAGTAA
1 ACCAGCTTATTCTCTCACATTAAAGAGTCAGTAA
* * * *
161411 ACCATCTTGTTCTCTCACATTACAGAGTCCGTAA
1 ACCAGCTTATTCTCTCACATTAAAGAGTCAGTAA
161445 CGAAATTATT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
34 30 1.00
ACGTcount: A:0.31, C:0.26, G:0.12, T:0.31
Consensus pattern (34 bp):
ACCAGCTTATTCTCTCACATTAAAGAGTCAGTAA
Found at i:165658 original size:43 final size:43
Alignment explanation
Indices: 165609--165745 Score: 104
Period size: 43 Copynumber: 3.2 Consensus size: 43
165599 GATAGCAGAT
165609 CTTGCCTTCCTGCGTTAACAGTGAAGCAGATCGAAAACGAAGC
1 CTTGCCTTCCTGCGTTAACAGTGAAGCAGATCGAAAACGAAGC
** * * * * * *
165652 CTTGCC-TCCAT-CAGTT-GTAGTGGAGTTAG-T-TAAAGATAGCAGAT
1 CTTGCCTTCC-TGC-GTTAACAGTGAAG-CAGATCGAAA-A-CGAAG-C
*
165696 CTTGCCTTCCTGCGTTAACAGCGAAGCAGATCGAAAACGAAGC
1 CTTGCCTTCCTGCGTTAACAGTGAAGCAGATCGAAAACGAAGC
165739 CTTGCCT
1 CTTGCCT
165746 CCATCGGTTG
Statistics
Matches: 66, Mismatches: 17, Indels: 22
0.63 0.16 0.21
Matches are distributed among these distances:
41 3 0.05
42 12 0.18
43 22 0.33
44 15 0.23
45 11 0.17
46 3 0.05
ACGTcount: A:0.28, C:0.24, G:0.23, T:0.25
Consensus pattern (43 bp):
CTTGCCTTCCTGCGTTAACAGTGAAGCAGATCGAAAACGAAGC
Found at i:165695 original size:87 final size:87
Alignment explanation
Indices: 165549--165880 Score: 549
Period size: 87 Copynumber: 3.8 Consensus size: 87
165539 AGATCAGTGA
* *
165549 AGATCGAAAACAAAGCCTTGCCTCCATCAGTTGTAGTGGAGCTGGTTAAAGATAGCAGATCTTGC
1 AGATCGAAAACGAAGCCTTGCCTCCATCAGTTGTAGTGGAGCTAGTTAAAGATAGCAGATCTTGC
*
165614 CTTCCTGCGTTAACAGTGAAGC
66 CTTCCTGCGTTAACAGCGAAGC
*
165636 AGATCGAAAACGAAGCCTTGCCTCCATCAGTTGTAGTGGAGTTAGTTAAAGATAGCAGATCTTGC
1 AGATCGAAAACGAAGCCTTGCCTCCATCAGTTGTAGTGGAGCTAGTTAAAGATAGCAGATCTTGC
165701 CTTCCTGCGTTAACAGCGAAGC
66 CTTCCTGCGTTAACAGCGAAGC
* *
165723 AGATCGAAAACGAAGCCTTGCCTCCATCGGTTGTAGTGGAGCTGGTTAAAGATAGCAGATCTTGC
1 AGATCGAAAACGAAGCCTTGCCTCCATCAGTTGTAGTGGAGCTAGTTAAAGATAGCAGATCTTGC
* * *
165788 CTTCTTGCATTAACAACGAAGC
66 CTTCCTGCGTTAACAGCGAAGC
* *
165810 AGATCGAAAACGAAGCCTTGCCACCATC-GATTGTAGTGGAGCTAGTTAAAGATAACAGATCTTG
1 AGATCGAAAACGAAGCCTTGCCTCCATCAG-TTGTAGTGGAGCTAGTTAAAGATAGCAGATCTTG
165874 CCTTCCT
65 CCTTCCT
165881 AAGCACTAGC
Statistics
Matches: 230, Mismatches: 14, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
86 1 0.00
87 229 1.00
ACGTcount: A:0.29, C:0.22, G:0.23, T:0.25
Consensus pattern (87 bp):
AGATCGAAAACGAAGCCTTGCCTCCATCAGTTGTAGTGGAGCTAGTTAAAGATAGCAGATCTTGC
CTTCCTGCGTTAACAGCGAAGC
Found at i:166176 original size:44 final size:43
Alignment explanation
Indices: 165995--166241 Score: 127
Period size: 44 Copynumber: 5.7 Consensus size: 43
165985 GTCAGAAATT
* *
165995 ACAAGTCTTATCTCCCT-AAGCAT-CAGTGGAGCAGACAGAAGAAA
1 ACAAGTCTTATCTCCCTGAAG-TTGCAGTGGAGCAGA-TG-AGAAA
* * ** *
166039 TCAA-TCCTATCTCCCTGAAGTTGCAGTGGAGTGGAT--TAAA
1 ACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGATGAGAAA
** * * *
166079 ACAATAGATCTTATCTCCCT-AAGCAGTAGTGGAGCAGAT-CG-CA
1 AC-A-AG-TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATGAGAAA
* **
166122 TCGGGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAGAAA
1 ACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGA-TGAGAAA
* ** *
166166 ACAAGTCTTATCCCCCTGAAGTCACAGTGGGGCAGATTGA-AGAA
1 ACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGA-TGAGA-AA
* * * *
166210 GCAAATCCTATCTCCCTGATA-TTACAGTGGAG
1 ACAAGTCTTATCTCCCTGA-AGTTGCAGTGGAG
166242 TGGATCAAAG
Statistics
Matches: 152, Mismatches: 38, Indels: 26
0.70 0.18 0.12
Matches are distributed among these distances:
40 16 0.11
41 17 0.11
42 2 0.01
43 30 0.20
44 86 0.57
45 1 0.01
ACGTcount: A:0.31, C:0.22, G:0.23, T:0.24
Consensus pattern (43 bp):
ACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGATGAGAAA
Found at i:170078 original size:4 final size:4
Alignment explanation
Indices: 170069--170094 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
170059 AATAAACTAA
170069 TATT TATT TATT TATT TATT TATT TA
1 TATT TATT TATT TATT TATT TATT TA
170095 ATATAAAATA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (4 bp):
TATT
Found at i:170360 original size:30 final size:31
Alignment explanation
Indices: 170305--170372 Score: 84
Period size: 30 Copynumber: 2.2 Consensus size: 31
170295 ACCCTTAAAA
** * **
170305 TATTTACACTATTGGTCCTTCAAATTTTTTG
1 TATTTACACTATTAATCCCTCAAATTTTAAG
170336 TATTTACACT-TTAATCCCTCAAATTTTAAG
1 TATTTACACTATTAATCCCTCAAATTTTAAG
170366 TATTTAC
1 TATTTAC
170373 TCTTGGGCAA
Statistics
Matches: 32, Mismatches: 5, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
30 22 0.69
31 10 0.31
ACGTcount: A:0.28, C:0.18, G:0.06, T:0.49
Consensus pattern (31 bp):
TATTTACACTATTAATCCCTCAAATTTTAAG
Found at i:172300 original size:37 final size:37
Alignment explanation
Indices: 172250--172402 Score: 227
Period size: 37 Copynumber: 4.2 Consensus size: 37
172240 ATCCTCCCTG
172250 ATTTGGCATGTTATCGGGTGGATTAGCTCTTATGAGC
1 ATTTGGCATGTTATCGGGTGGATTAGCTCTTATGAGC
*
172287 ATTTGGCGTGTTATCGGGTGGATTAGCTCTTATGAGC
1 ATTTGGCATGTTATCGGGTGGATTAGCTCTTATGAGC
* *
172324 ATTTGGCATGTTATC-GGTGGATTCGCTCTTATGAAC
1 ATTTGGCATGTTATCGGGTGGATTAGCTCTTATGAGC
* * * *
172360 ATTTGGCGTGTTATCGGATGAATTAGCTCTTACGAGC
1 ATTTGGCATGTTATCGGGTGGATTAGCTCTTATGAGC
*
172397 GTTTGG
1 ATTTGG
172403 ATTGTTTTGT
Statistics
Matches: 104, Mismatches: 11, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
36 33 0.32
37 71 0.68
ACGTcount: A:0.18, C:0.14, G:0.29, T:0.38
Consensus pattern (37 bp):
ATTTGGCATGTTATCGGGTGGATTAGCTCTTATGAGC
Found at i:172356 original size:73 final size:74
Alignment explanation
Indices: 172250--172402 Score: 245
Period size: 73 Copynumber: 2.1 Consensus size: 74
172240 ATCCTCCCTG
* * *
172250 ATTTGGCATGTTATCGGGTGGATTAGCTCTTATGAGCATTTGGCGTGTTATCGGGTGGATTAGCT
1 ATTTGGCATGTTATCGGGTGGATTAGCTCTTATGAACATTTGGCGTGTTATCGGATGAATTAGCT
*
172315 CTTATGAGC
66 CTTACGAGC
*
172324 ATTTGGCATGTTATC-GGTGGATTCGCTCTTATGAACATTTGGCGTGTTATCGGATGAATTAGCT
1 ATTTGGCATGTTATCGGGTGGATTAGCTCTTATGAACATTTGGCGTGTTATCGGATGAATTAGCT
172388 CTTACGAGC
66 CTTACGAGC
*
172397 GTTTGG
1 ATTTGG
172403 ATTGTTTTGT
Statistics
Matches: 73, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
73 58 0.79
74 15 0.21
ACGTcount: A:0.18, C:0.14, G:0.29, T:0.38
Consensus pattern (74 bp):
ATTTGGCATGTTATCGGGTGGATTAGCTCTTATGAACATTTGGCGTGTTATCGGATGAATTAGCT
CTTACGAGC
Found at i:173391 original size:24 final size:24
Alignment explanation
Indices: 173355--173411 Score: 96
Period size: 24 Copynumber: 2.4 Consensus size: 24
173345 TCAGTATGGT
* *
173355 ACACGGCCTAGCACACGGCCTGGG
1 ACACGCCCCAGCACACGGCCTGGG
173379 ACACGCCCCAGCACACGGCCTGGG
1 ACACGCCCCAGCACACGGCCTGGG
173403 ACACGCCCC
1 ACACGCCCC
173412 TGTCACTTGG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
24 31 1.00
ACGTcount: A:0.21, C:0.46, G:0.28, T:0.05
Consensus pattern (24 bp):
ACACGCCCCAGCACACGGCCTGGG
Found at i:173407 original size:12 final size:12
Alignment explanation
Indices: 173355--173399 Score: 54
Period size: 12 Copynumber: 3.8 Consensus size: 12
173345 TCAGTATGGT
173355 ACACGGCCTAGC
1 ACACGGCCTAGC
* *
173367 ACACGGCCTGGG
1 ACACGGCCTAGC
* *
173379 ACACGCCCCAGC
1 ACACGGCCTAGC
173391 ACACGGCCT
1 ACACGGCCT
173400 GGGACACGCC
Statistics
Matches: 25, Mismatches: 8, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
12 25 1.00
ACGTcount: A:0.22, C:0.44, G:0.27, T:0.07
Consensus pattern (12 bp):
ACACGGCCTAGC
Found at i:173492 original size:120 final size:120
Alignment explanation
Indices: 173279--173501 Score: 333
Period size: 120 Copynumber: 1.9 Consensus size: 120
173269 GGACATGGCT
* **
173279 TGGGACACGCCCGTGTCACTTGGCCGTGTGCCGCACATGGTCTGAGACACGGTCATGGGTATTAA
1 TGGGACACGCCCCTGTCACTTGGCCGTGTGCCGCACATGGTCTGAGACACGACCATGGGTATTAA
*
173344 ATCAGTATGGTACACGGCCTAGCACACGGCCTGGGACACGCCCCAGCACACGGCC
66 ATCAGTATGGTACACAGCCTAGCACACGGCCTGGGACACGCCCCAGCACACGGCC
** *
173399 TGGGACACGCCCCTGTCACTTGGCCGTGTGCTTCACATGGTCTGAGACACGACCGTGGGTATTAA
1 TGGGACACGCCCCTGTCACTTGGCCGTGTGCCGCACATGGTCTGAGACACGACCATGGGTATTAA
* *
173464 GTCAGTGTAT-G-ACACAGCCTAGCACACGGCTTGGGACA
66 ATCA--GTATGGTACACAGCCTAGCACACGGCCTGGGACA
173502 TGCCAGTGTC
Statistics
Matches: 92, Mismatches: 9, Indels: 4
0.88 0.09 0.04
Matches are distributed among these distances:
120 87 0.95
121 1 0.01
122 4 0.04
ACGTcount: A:0.21, C:0.30, G:0.30, T:0.20
Consensus pattern (120 bp):
TGGGACACGCCCCTGTCACTTGGCCGTGTGCCGCACATGGTCTGAGACACGACCATGGGTATTAA
ATCAGTATGGTACACAGCCTAGCACACGGCCTGGGACACGCCCCAGCACACGGCC
Found at i:173542 original size:96 final size:96
Alignment explanation
Indices: 173388--173597 Score: 251
Period size: 96 Copynumber: 2.2 Consensus size: 96
173378 GACACGCCCC
* * *
173388 AGCACACGGCCTGGGACACGCCCCTGTCACTTGGCCGTGTGCTTCACATGGTCTGAGACACGACC
1 AGCACACGGCCTGGGACACGCCACTGTCACTTGGCCATGTGCTACACATGGTCTGAGACACGACC
* * *
173453 GTGGGTATTAAGTCAGTGTATGACACAGCCT
66 ATAGGTATTAAGTCAGCGTATGACACAGCCT
* * * * *
173484 AGCACACGGCTTGGGACATGCCAGTGTCACTTGGCTATGTGAC-ACACATGGTCTGAGACACGGC
1 AGCACACGGCCTGGGACACGCCACTGTCACTTGGCCATGTG-CTACACATGGTCTGAGACACGAC
* * *
173548 CATAGGTATTAAGTCAGCGTTTTACATAGCCT
65 CATAGGTATTAAGTCAGCGTATGACACAGCCT
* * *
173580 AGCATACGACCTGCGACA
1 AGCACACGGCCTGGGACA
173598 TGGTTGTGTG
Statistics
Matches: 95, Mismatches: 18, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
96 94 0.99
97 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.27, T:0.22
Consensus pattern (96 bp):
AGCACACGGCCTGGGACACGCCACTGTCACTTGGCCATGTGCTACACATGGTCTGAGACACGACC
ATAGGTATTAAGTCAGCGTATGACACAGCCT
Found at i:175749 original size:20 final size:20
Alignment explanation
Indices: 175699--175920 Score: 92
Period size: 20 Copynumber: 11.1 Consensus size: 20
175689 AATTATTGTA
*
175699 TGATTGCACTT-GCGTGCCCC
1 TGATTGCACTTAG-GTACCCC
* *
175719 T-ATTAGTACTTTGGTACCCC
1 TGATT-GCACTTAGGTACCCC
* **
175739 TGATTGCACTTACGTACCTT
1 TGATTGCACTTAGGTACCCC
* *
175759 TGTTTGTACTTCA-GTACCCC
1 TGATTGCACTT-AGGTACCCC
* * *
175779 TGATTGCACATACGTGCCCC
1 TGATTGCACTTAGGTACCCC
* * * * *
175799 TGTTTGTACTTCGATGCCCC
1 TGATTGCACTTAGGTACCCC
* * * *
175819 TGATTGCACATACGTGCCCT
1 TGATTGCACTTAGGTACCCC
** * *
175839 TTTTTGTACTTCGGTACCCC
1 TGATTGCACTTAGGTACCCC
* * * *
175859 TGATTGCACATACGTGCCAC
1 TGATTGCACTTAGGTACCCC
* *
175879 TG-TTAGTACTTCGGTACCCC
1 TGATT-GCACTTAGGTACCCC
* *
175899 TGATTGCACTTATGTGCCCC
1 TGATTGCACTTAGGTACCCC
175919 TG
1 TG
175921 TTTATACTCT
Statistics
Matches: 141, Mismatches: 54, Indels: 14
0.67 0.26 0.07
Matches are distributed among these distances:
19 6 0.04
20 128 0.91
21 7 0.05
ACGTcount: A:0.16, C:0.30, G:0.19, T:0.35
Consensus pattern (20 bp):
TGATTGCACTTAGGTACCCC
Found at i:175768 original size:40 final size:40
Alignment explanation
Indices: 175699--175928 Score: 264
Period size: 40 Copynumber: 5.8 Consensus size: 40
175689 AATTATTGTA
* * * * * *
175699 TGATTGCACTTGCGTGCCCCTATTAGTACTTTGGTACCCC
1 TGATTGCACATACGTGCCTCTGTTTGTACTTCGGTACCCC
* * * *
175739 TGATTGCACTTACGTACCTTTGTTTGTACTTCAGTACCCC
1 TGATTGCACATACGTGCCTCTGTTTGTACTTCGGTACCCC
* * *
175779 TGATTGCACATACGTGCCCCTGTTTGTACTTCGATGCCCC
1 TGATTGCACATACGTGCCTCTGTTTGTACTTCGGTACCCC
*
175819 TGATTGCACATACGTGCC-CTTTTTTGTACTTCGGTACCCC
1 TGATTGCACATACGTGCCTC-TGTTTGTACTTCGGTACCCC
* *
175859 TGATTGCACATACGTGCCACTGTTAGTACTTCGGTACCCC
1 TGATTGCACATACGTGCCTCTGTTTGTACTTCGGTACCCC
* * * *
175899 TGATTGCACTTATGTGCCCCTGTTTATACT
1 TGATTGCACATACGTGCCTCTGTTTGTACT
175929 CTAGTAACTC
Statistics
Matches: 163, Mismatches: 25, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
39 1 0.01
40 161 0.99
41 1 0.01
ACGTcount: A:0.17, C:0.29, G:0.18, T:0.36
Consensus pattern (40 bp):
TGATTGCACATACGTGCCTCTGTTTGTACTTCGGTACCCC
Found at i:175856 original size:120 final size:120
Alignment explanation
Indices: 175699--175928 Score: 325
Period size: 120 Copynumber: 1.9 Consensus size: 120
175689 AATTATTGTA
* * * * ** *
175699 TGATTGCACTTGCGTGCCCCTATTAGTACTTTGGTACCCCTGATTGCACTTACGTACCTTTGTTT
1 TGATTGCACATACGTGCCCCTATTAGTACTTCGGTACCCCTGATTGCACATACGTACCACTGTTA
*
175764 GTACTTCAGTACCCCTGATTGCACATACGTGCCCCTGTTTGTACTTCGATGCCCC
66 GTACTTCAGTACCCCTGATTGCACATACGTGCCCCTGTTTATACTTCGATGCCCC
* * * *
175819 TGATTGCACATACGTGCCCTTTTTTGTACTTCGGTACCCCTGATTGCACATACGTGCCACTGTTA
1 TGATTGCACATACGTGCCCCTATTAGTACTTCGGTACCCCTGATTGCACATACGTACCACTGTTA
* * *
175884 GTACTTCGGTACCCCTGATTGCACTTATGTGCCCCTGTTTATACT
66 GTACTTCAGTACCCCTGATTGCACATACGTGCCCCTGTTTATACT
175929 CTAGTAACTC
Statistics
Matches: 95, Mismatches: 15, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
120 95 1.00
ACGTcount: A:0.17, C:0.29, G:0.18, T:0.36
Consensus pattern (120 bp):
TGATTGCACATACGTGCCCCTATTAGTACTTCGGTACCCCTGATTGCACATACGTACCACTGTTA
GTACTTCAGTACCCCTGATTGCACATACGTGCCCCTGTTTATACTTCGATGCCCC
Found at i:175916 original size:80 final size:81
Alignment explanation
Indices: 175699--175917 Score: 316
Period size: 80 Copynumber: 2.7 Consensus size: 81
175689 AATTATTGTA
* * * * *
175699 TGATTGCACTTGCGTGCCCCTATTAGTACTTTGGTACCCCTGATTGCACTTACGT-ACCTTTGTT
1 TGATTGCACATACGTGCCCCTGTTAGTACTTCGGTACCCCTGATTGCACTTACGTGCCCTTTGTT
175763 TGTACTTCAGTACCCC
66 TGTACTTCAGTACCCC
* * * *
175779 TGATTGCACATACGTGCCCCTGTTTGTACTTCGATGCCCCTGATTGCACATACGTGCCCTTT-TT
1 TGATTGCACATACGTGCCCCTGTTAGTACTTCGGTACCCCTGATTGCACTTACGTGCCCTTTGTT
*
175843 TGTACTTCGGTACCCC
66 TGTACTTCAGTACCCC
* *
175859 TGATTGCACATACGTGCCACTGTTAGTACTTCGGTACCCCTGATTGCACTTATGTGCCC
1 TGATTGCACATACGTGCCCCTGTTAGTACTTCGGTACCCCTGATTGCACTTACGTGCCC
175918 CTGTTTATAC
Statistics
Matches: 122, Mismatches: 16, Indels: 2
0.87 0.11 0.01
Matches are distributed among these distances:
80 117 0.96
81 5 0.04
ACGTcount: A:0.16, C:0.30, G:0.19, T:0.35
Consensus pattern (81 bp):
TGATTGCACATACGTGCCCCTGTTAGTACTTCGGTACCCCTGATTGCACTTACGTGCCCTTTGTT
TGTACTTCAGTACCCC
Found at i:178114 original size:14 final size:14
Alignment explanation
Indices: 178095--178124 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
178085 TAATTTGTGC
*
178095 TTTTGATGTTTATG
1 TTTTGAAGTTTATG
178109 TTTTGAAGTTTATG
1 TTTTGAAGTTTATG
178123 TT
1 TT
178125 AAATTGGTAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.17, C:0.00, G:0.20, T:0.63
Consensus pattern (14 bp):
TTTTGAAGTTTATG
Found at i:183947 original size:61 final size:61
Alignment explanation
Indices: 183876--184038 Score: 209
Period size: 61 Copynumber: 2.7 Consensus size: 61
183866 CGCCACAAAT
* * * *
183876 GCTCACATGTAATAGAGAACAGCCACAAGGGCTTCCATATATAAAATTTTCCACCACTAAG
1 GCTCACATGTAACAAAGAACAGCCACAAAGGCTTCCATATATAAAATGTTCCACCACTAAG
* * * * *
183937 GCTCACATGTAACATAGAACAACCAAAAAGGCTTCCACATATAATATGTTCCACCACTAAG
1 GCTCACATGTAACAAAGAACAGCCACAAAGGCTTCCATATATAAAATGTTCCACCACTAAG
* * * *
183998 CCTCACATGTAACAAAGTATAGCCACAAAGGCTTACATATA
1 GCTCACATGTAACAAAGAACAGCCACAAAGGCTTCCATATA
184039 ACATATTCAA
Statistics
Matches: 86, Mismatches: 16, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
61 86 1.00
ACGTcount: A:0.40, C:0.25, G:0.13, T:0.22
Consensus pattern (61 bp):
GCTCACATGTAACAAAGAACAGCCACAAAGGCTTCCATATATAAAATGTTCCACCACTAAG
Found at i:191958 original size:20 final size:21
Alignment explanation
Indices: 191923--191969 Score: 60
Period size: 20 Copynumber: 2.3 Consensus size: 21
191913 TAACAGTAAC
191923 GAGCTGAGAGTAATTTAAAAT
1 GAGCTGAGAGTAATTTAAAAT
* **
191944 GAGCTGA-ATTAATTTCCAAT
1 GAGCTGAGAGTAATTTAAAAT
191964 GAGCTG
1 GAGCTG
191970 GATGGAACTA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
20 16 0.70
21 7 0.30
ACGTcount: A:0.36, C:0.11, G:0.23, T:0.30
Consensus pattern (21 bp):
GAGCTGAGAGTAATTTAAAAT
Found at i:201769 original size:41 final size:41
Alignment explanation
Indices: 201722--201831 Score: 123
Period size: 41 Copynumber: 2.7 Consensus size: 41
201712 AGCTTATTAA
*
201722 AATACACTAGCATAAAGCCTTCTAGGCATAAAGCCTGATAT
1 AATACACTGGCATAAAGCCTTCTAGGCATAAAGCCTGATAT
** * * *
201763 GGTACACCGGCATGAAGCCTGT-TAGGCATAAAGCCTGCTAT
1 AATACACTGGCATAAAGCCT-TCTAGGCATAAAGCCTGATAT
* * *
201804 AATTCACTGGAATAAAGCCTGCTAGGCA
1 AATACACTGGCATAAAGCCTTCTAGGCA
201832 CAGAGCCCGA
Statistics
Matches: 54, Mismatches: 13, Indels: 4
0.76 0.18 0.06
Matches are distributed among these distances:
41 53 0.98
42 1 0.02
ACGTcount: A:0.34, C:0.23, G:0.21, T:0.23
Consensus pattern (41 bp):
AATACACTGGCATAAAGCCTTCTAGGCATAAAGCCTGATAT
Found at i:204759 original size:27 final size:26
Alignment explanation
Indices: 204688--204764 Score: 91
Period size: 26 Copynumber: 2.9 Consensus size: 26
204678 ACATTTTTCC
* *
204688 TCAAAAATTTATTAGGGGCAAAATCG
1 TCAAAATTTTATTAGGGGTAAAATCG
* * *
204714 TCAAAATTTTACTATGGGTAAAATTG
1 TCAAAATTTTATTAGGGGTAAAATCG
*
204740 TCAAAATTTTTGTTAGGGGTAAAAT
1 TCAAAA-TTTTATTAGGGGTAAAAT
204765 AGGGATAGAA
Statistics
Matches: 42, Mismatches: 8, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
26 27 0.64
27 15 0.36
ACGTcount: A:0.39, C:0.08, G:0.18, T:0.35
Consensus pattern (26 bp):
TCAAAATTTTATTAGGGGTAAAATCG
Found at i:217639 original size:24 final size:24
Alignment explanation
Indices: 217596--217706 Score: 141
Period size: 24 Copynumber: 4.6 Consensus size: 24
217586 GTATCCCCGA
*
217596 AACAATGAAAAGGTTGAAAAGGAT
1 AACAATGGAAAGGTTGAAAAGGAT
* * * *
217620 AATAATGGAAATGATAAAAAGGAT
1 AACAATGGAAAGGTTGAAAAGGAT
217644 AACAATGGAAAGGTTGAAAAGGAT
1 AACAATGGAAAGGTTGAAAAGGAT
*
217668 AACAATGAAAAGGTTGAAAAGGAT
1 AACAATGGAAAGGTTGAAAAGGAT
* * *
217692 ACCAAGGGAATGGTT
1 AACAATGGAAAGGTT
217707 ATTAGATCAA
Statistics
Matches: 73, Mismatches: 14, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
24 73 1.00
ACGTcount: A:0.51, C:0.05, G:0.26, T:0.18
Consensus pattern (24 bp):
AACAATGGAAAGGTTGAAAAGGAT
Found at i:226842 original size:43 final size:43
Alignment explanation
Indices: 226785--226870 Score: 127
Period size: 43 Copynumber: 2.0 Consensus size: 43
226775 TTAGATAATT
* *
226785 TTTTTTTTTAAATTTTTAATTTTTAAATAGTGAATTTTGATAA
1 TTTTTCTTTAAATTTTTAATTTTTAAATACTGAATTTTGATAA
* * *
226828 TTTTTCTTTCAATTTTTAATTTTTAAATACTTAGTTTTGATAA
1 TTTTTCTTTAAATTTTTAATTTTTAAATACTGAATTTTGATAA
226871 GATTTCTTCA
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
43 38 1.00
ACGTcount: A:0.30, C:0.03, G:0.06, T:0.60
Consensus pattern (43 bp):
TTTTTCTTTAAATTTTTAATTTTTAAATACTGAATTTTGATAA
Found at i:226877 original size:43 final size:42
Alignment explanation
Indices: 226795--226886 Score: 121
Period size: 43 Copynumber: 2.2 Consensus size: 42
226785 TTTTTTTTTA
* **
226795 AATTTTTAATTTTTAAATAGTGAATTTTGATAATTTTTCTTTC
1 AATTTTTAATTTTTAAATACTGAATTTTGATAAGATTTC-TTC
* *
226838 AATTTTTAATTTTTAAATACTTAGTTTTGATAAGATTTCTTC
1 AATTTTTAATTTTTAAATACTGAATTTTGATAAGATTTCTTC
*
226880 AAGTTTT
1 AATTTTT
226887 CTTTTAGTTA
Statistics
Matches: 43, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
42 9 0.21
43 34 0.79
ACGTcount: A:0.30, C:0.05, G:0.08, T:0.57
Consensus pattern (42 bp):
AATTTTTAATTTTTAAATACTGAATTTTGATAAGATTTCTTC
Found at i:227166 original size:39 final size:39
Alignment explanation
Indices: 227107--227185 Score: 149
Period size: 39 Copynumber: 2.0 Consensus size: 39
227097 GCTTAAAAAG
227107 AACTGAAGAGTGCCCCTGAGGCCCTGACTTCACTCCACT
1 AACTGAAGAGTGCCCCTGAGGCCCTGACTTCACTCCACT
*
227146 AACTGAAGAGTGCCCTTGAGGCCCTGACTTCACTCCACT
1 AACTGAAGAGTGCCCCTGAGGCCCTGACTTCACTCCACT
227185 A
1 A
227186 CTTTTTTGTC
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.24, C:0.34, G:0.20, T:0.22
Consensus pattern (39 bp):
AACTGAAGAGTGCCCCTGAGGCCCTGACTTCACTCCACT
Found at i:231568 original size:2 final size:2
Alignment explanation
Indices: 231563--231587 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
231553 TCACACAGAA
231563 AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG A
231588 ACTGCGAAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (2 bp):
AG
Found at i:231931 original size:14 final size:15
Alignment explanation
Indices: 231904--231933 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
231894 AAATGAAGTT
231904 TTTACAATTTTTTTC
1 TTTACAATTTTTTTC
231919 TTTACAATTTTTTTC
1 TTTACAATTTTTTTC
231934 CCTCCGGTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.20, C:0.13, G:0.00, T:0.67
Consensus pattern (15 bp):
TTTACAATTTTTTTC
Found at i:234128 original size:57 final size:57
Alignment explanation
Indices: 233957--234243 Score: 325
Period size: 56 Copynumber: 5.1 Consensus size: 57
233947 TTACTGTTTG
* *
233957 CATGCTGTCATAAATTGAATTAAAGCTGTTGTTTGAGTGTTTCAAATTGAGCATTTT
1 CATGCTGTCATAAATTAAATTAAAGCTGTTGTTTTAGTGTTTCAAATTGAGCATTTT
* * * *
234014 CATACTGTCTTAAATTAAA-TCAAGCTGCTGTTTTAGTGTTTCAAATTGAGCATTTT
1 CATGCTGTCATAAATTAAATTAAAGCTGTTGTTTTAGTGTTTCAAATTGAGCATTTT
* * * *
234070 CATGCTGTCATAAATTGAATTAAAGTTGGTGTTTTAGTGTATCAAATTGAGCATTTT
1 CATGCTGTCATAAATTAAATTAAAGCTGTTGTTTTAGTGTTTCAAATTGAGCATTTT
* * * *
234127 CATGTTGTCTTAAATTAAATT-AAGCTGTTG-TTTAATGTTTCAAATTGAGTATTATT
1 CATGCTGTCATAAATTAAATTAAAGCTGTTGTTTTAGTGTTTCAAATTGAGCATT-TT
* * * * * * *
234183 -ATGCTGCCCTAAATTAAATTACAG-TGTTGCTTTAGTGTCTCAAAGTAAGCATTATT
1 CATGCTGTCATAAATTAAATTAAAGCTGTTGTTTTAGTGTTTCAAATTGAGCATT-TT
234239 -ATGCT
1 CATGCT
234244 ATTGAAAAAT
Statistics
Matches: 196, Mismatches: 30, Indels: 9
0.83 0.13 0.04
Matches are distributed among these distances:
55 42 0.21
56 87 0.44
57 67 0.34
ACGTcount: A:0.29, C:0.11, G:0.17, T:0.43
Consensus pattern (57 bp):
CATGCTGTCATAAATTAAATTAAAGCTGTTGTTTTAGTGTTTCAAATTGAGCATTTT
Found at i:234159 original size:113 final size:112
Alignment explanation
Indices: 233957--234235 Score: 364
Period size: 113 Copynumber: 2.5 Consensus size: 112
233947 TTACTGTTTG
* *
233957 CATGCTGTCATAAATTGAATTAAAGCTGTTGTTTGAGTGTTTCAAATTGAGCATTTTCATACTGT
1 CATGCTGTCATAAATTGAATTAAAG-TGTTGTTTTAGTGTATCAAATTGAGCATTTTCATACTGT
*
234022 CTTAAATTAAATCAAGCTGCTGTTTTAGTGTTTCAAATTGAGCATT-TT
65 CTTAAATTAAATCAAGCTGCTG-TTTAATGTTTCAAATTGAGCATTATT
* **
234070 CATGCTGTCATAAATTGAATTAAAGTTGGTGTTTTAGTGTATCAAATTGAGCATTTTCATGTTGT
1 CATGCTGTCATAAATTGAATTAAAG-TGTTGTTTTAGTGTATCAAATTGAGCATTTTCATACTGT
* * *
234135 CTTAAATTAAATTAAGCTGTTGTTTAATGTTTCAAATTGAGTATTATT
65 CTTAAATTAAATCAAGCTGCTGTTTAATGTTTCAAATTGAGCATTATT
* * * * * * * *
234183 -ATGCTGCCCTAAATTAAATTACAGTGTTGCTTTAGTGTCTCAAAGTAAGCATT
1 CATGCTGTCATAAATTGAATTAAAGTGTTGTTTTAGTGTATCAAATTGAGCATT
234236 ATTATGCTAT
Statistics
Matches: 146, Mismatches: 19, Indels: 4
0.86 0.11 0.02
Matches are distributed among these distances:
111 24 0.16
112 41 0.28
113 81 0.55
ACGTcount: A:0.29, C:0.11, G:0.17, T:0.42
Consensus pattern (112 bp):
CATGCTGTCATAAATTGAATTAAAGTGTTGTTTTAGTGTATCAAATTGAGCATTTTCATACTGTC
TTAAATTAAATCAAGCTGCTGTTTAATGTTTCAAATTGAGCATTATT
Found at i:236960 original size:25 final size:27
Alignment explanation
Indices: 236932--236986 Score: 64
Period size: 26 Copynumber: 2.1 Consensus size: 27
236922 CATTTCAATT
236932 ATGTGTTAAT-TTC-AAGACTTATGTA
1 ATGTGTTAATATTCAAAGACTTATGTA
*
236957 A--TGTTAGTGATTCAAAGACTTATGTA
1 ATGTGTTAAT-ATTCAAAGACTTATGTA
236983 ATGT
1 ATGT
236987 TTTTAATTAT
Statistics
Matches: 24, Mismatches: 1, Indels: 7
0.75 0.03 0.22
Matches are distributed among these distances:
23 6 0.25
25 4 0.17
26 13 0.54
28 1 0.04
ACGTcount: A:0.33, C:0.07, G:0.18, T:0.42
Consensus pattern (27 bp):
ATGTGTTAATATTCAAAGACTTATGTA
Found at i:237021 original size:9 final size:9
Alignment explanation
Indices: 237007--237055 Score: 55
Period size: 9 Copynumber: 5.4 Consensus size: 9
236997 GTAGTGATTC
237007 AATTCGGTT
1 AATTCGGTT
*
237016 AATTCGATT
1 AATTCGGTT
*
237025 AATTCAAG-T
1 AATTC-GGTT
237034 AATTCGGTT
1 AATTCGGTT
*
237043 AATTCAGTT
1 AATTCGGTT
237052 AATT
1 AATT
237056 TTTAACCAAA
Statistics
Matches: 33, Mismatches: 5, Indels: 4
0.79 0.12 0.10
Matches are distributed among these distances:
8 1 0.03
9 32 0.97
ACGTcount: A:0.33, C:0.10, G:0.14, T:0.43
Consensus pattern (9 bp):
AATTCGGTT
Found at i:237054 original size:18 final size:18
Alignment explanation
Indices: 237002--237055 Score: 65
Period size: 18 Copynumber: 2.9 Consensus size: 18
236992 ATTATGTAGT
*
237002 GATTCAATTCGGTTAATTC
1 GATT-AATTCAGTTAATTC
237021 GATTAATTCAAG-TAATTC
1 GATTAATTC-AGTTAATTC
*
237039 GGTTAATTCAGTTAATT
1 GATTAATTCAGTTAATT
237056 TTTAACCAAA
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
17 2 0.06
18 24 0.77
19 5 0.16
ACGTcount: A:0.31, C:0.11, G:0.15, T:0.43
Consensus pattern (18 bp):
GATTAATTCAGTTAATTC
Found at i:237443 original size:29 final size:31
Alignment explanation
Indices: 237410--237470 Score: 83
Period size: 29 Copynumber: 2.0 Consensus size: 31
237400 CGAAAATTTG
237410 AAATTTA-GTCTCTATA-TTTTT-ATTTTAAA
1 AAATTTAGGTC-CTATACTTTTTAATTTTAAA
237439 AAATTTAGGTCCTATACTTTTTAAATTTTAAA
1 AAATTTAGGTCCTATACTTTTT-AATTTTAAA
237471 TTTTTGTGTG
Statistics
Matches: 28, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
29 12 0.43
30 8 0.29
32 8 0.29
ACGTcount: A:0.36, C:0.08, G:0.05, T:0.51
Consensus pattern (31 bp):
AAATTTAGGTCCTATACTTTTTAATTTTAAA
Found at i:242109 original size:81 final size:81
Alignment explanation
Indices: 241969--242235 Score: 376
Period size: 81 Copynumber: 3.3 Consensus size: 81
241959 ATCTGCACCT
** * * * *
241969 AAATACCCTTATAGGGTAGAATAACCAAAATACCCCTATAGGGTAGAATGACCGAAATACCCCCA
1 AAATACCCCCATAGGGTAAAATAACCGAAATACCCCCATAGGGTAAAATGACCGAAATACCCCCA
*
242034 TAGGGTAGAATGA-CA
66 TAGGGTAAAATGACCA
* * * *
242049 AGAATACCCCCATAGGGTAAAATGACCGGAATACCCCCATAGGGTAAAATGACCGGAATACCCCT
1 A-AATACCCCCATAGGGTAAAATAACCGAAATACCCCCATAGGGTAAAATGACCGAAATACCCCC
*
242114 ATAGGGTAAAATGATCA
65 ATAGGGTAAAATGACCA
* *
242131 AAATACCCCCATAGGGTAAAATAACCGAAATA-CCCCTTAGGGTAAAATGATCGAAATACCCCCA
1 AAATACCCCCATAGGGTAAAATAACCGAAATACCCCCATAGGGTAAAATGACCGAAATACCCCCA
242195 TAGGGTAAAATGACCA
66 TAGGGTAAAATGACCA
*
242211 AAATACCCCCATAGGATAAAATAAC
1 AAATACCCCCATAGGGTAAAATAAC
242236 TGTTATACCC
Statistics
Matches: 166, Mismatches: 19, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
80 68 0.41
81 95 0.57
82 3 0.02
ACGTcount: A:0.42, C:0.23, G:0.18, T:0.18
Consensus pattern (81 bp):
AAATACCCCCATAGGGTAAAATAACCGAAATACCCCCATAGGGTAAAATGACCGAAATACCCCCA
TAGGGTAAAATGACCA
Found at i:242245 original size:27 final size:27
Alignment explanation
Indices: 241969--242232 Score: 334
Period size: 27 Copynumber: 9.8 Consensus size: 27
241959 ATCTGCACCT
** * * *
241969 AAATACCCTTATAGGGTAGAATAACCA
1 AAATACCCCCATAGGGTAAAATGACCG
* *
241996 AAATACCCCTATAGGGTAGAATGACCG
1 AAATACCCCCATAGGGTAAAATGACCG
* *
242023 AAATACCCCCATAGGGTAGAATGA-CA
1 AAATACCCCCATAGGGTAAAATGACCG
242049 AGAATACCCCCATAGGGTAAAATGACCG
1 A-AATACCCCCATAGGGTAAAATGACCG
*
242077 GAATACCCCCATAGGGTAAAATGACCG
1 AAATACCCCCATAGGGTAAAATGACCG
* * * *
242104 GAATACCCCTATAGGGTAAAATGATCA
1 AAATACCCCCATAGGGTAAAATGACCG
*
242131 AAATACCCCCATAGGGTAAAATAACCG
1 AAATACCCCCATAGGGTAAAATGACCG
* *
242158 AAATA-CCCCTTAGGGTAAAATGATCG
1 AAATACCCCCATAGGGTAAAATGACCG
*
242184 AAATACCCCCATAGGGTAAAATGACCA
1 AAATACCCCCATAGGGTAAAATGACCG
*
242211 AAATACCCCCATAGGATAAAAT
1 AAATACCCCCATAGGGTAAAAT
242233 AACTGTTATA
Statistics
Matches: 211, Mismatches: 23, Indels: 6
0.88 0.10 0.03
Matches are distributed among these distances:
26 25 0.12
27 185 0.88
28 1 0.00
ACGTcount: A:0.42, C:0.23, G:0.18, T:0.18
Consensus pattern (27 bp):
AAATACCCCCATAGGGTAAAATGACCG
Found at i:242691 original size:28 final size:28
Alignment explanation
Indices: 242660--242823 Score: 242
Period size: 28 Copynumber: 5.9 Consensus size: 28
242650 GCACTGTTAC
*
242660 TGTATTGGGCTAAGGACCACACTGATTT
1 TGTATTGGGCTAAGGCCCACACTGATTT
242688 TGTATTGGGCTAAGGCCCACACTG-TTAT
1 TGTATTGGGCTAAGGCCCACACTGATT-T
242716 TGTATTGGGCTAAGGCCCACACTGATTT
1 TGTATTGGGCTAAGGCCCACACTGATTT
** * *
242744 CATATTGGGTTAAGGCCCACACTGATTC
1 TGTATTGGGCTAAGGCCCACACTGATTT
*
242772 TGTATTGGGCTAAGGCCCATACTG-TTAT
1 TGTATTGGGCTAAGGCCCACACTGATT-T
242800 TGTATTGGGCTAAGGCCCACACTG
1 TGTATTGGGCTAAGGCCCACACTG
242824 TACTATCACT
Statistics
Matches: 122, Mismatches: 11, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
27 4 0.03
28 116 0.95
29 2 0.02
ACGTcount: A:0.23, C:0.21, G:0.25, T:0.31
Consensus pattern (28 bp):
TGTATTGGGCTAAGGCCCACACTGATTT
Found at i:242796 original size:84 final size:84
Alignment explanation
Indices: 242662--242823 Score: 288
Period size: 84 Copynumber: 1.9 Consensus size: 84
242652 ACTGTTACTG
*
242662 TATTGGGCTAAGGACCACACTGATTTTGTATTGGGCTAAGGCCCACACTGTTATTGTATTGGGCT
1 TATTGGGCTAAGGACCACACTGATTCTGTATTGGGCTAAGGCCCACACTGTTATTGTATTGGGCT
242727 AAGGCCCACACTGATTTCA
66 AAGGCCCACACTGATTTCA
* * *
242746 TATTGGGTTAAGGCCCACACTGATTCTGTATTGGGCTAAGGCCCATACTGTTATTGTATTGGGCT
1 TATTGGGCTAAGGACCACACTGATTCTGTATTGGGCTAAGGCCCACACTGTTATTGTATTGGGCT
242811 AAGGCCCACACTG
66 AAGGCCCACACTG
242824 TACTATCACT
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
84 74 1.00
ACGTcount: A:0.23, C:0.22, G:0.25, T:0.31
Consensus pattern (84 bp):
TATTGGGCTAAGGACCACACTGATTCTGTATTGGGCTAAGGCCCACACTGTTATTGTATTGGGCT
AAGGCCCACACTGATTTCA
Found at i:244306 original size:18 final size:18
Alignment explanation
Indices: 244283--244317 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
244273 GAAATTTATA
244283 TAAAAT-CCTAGAAGGATT
1 TAAAATCCCT-GAAGGATT
244301 TAAAATCCCTGAAGGAT
1 TAAAATCCCTGAAGGAT
244318 ATAGAGTTTC
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 13 0.81
19 3 0.19
ACGTcount: A:0.43, C:0.14, G:0.17, T:0.26
Consensus pattern (18 bp):
TAAAATCCCTGAAGGATT
Found at i:253062 original size:12 final size:12
Alignment explanation
Indices: 253045--253078 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
253035 TAACTTTGGT
*
253045 GTAGATGTAATA
1 GTAGATGTAAAA
*
253057 GTAGATTTAAAA
1 GTAGATGTAAAA
253069 GTAGATGTAA
1 GTAGATGTAA
253079 CATTAACCAC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.44, C:0.00, G:0.24, T:0.32
Consensus pattern (12 bp):
GTAGATGTAAAA
Found at i:255121 original size:21 final size:21
Alignment explanation
Indices: 255091--255131 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
255081 AATTTAAAAC
*
255091 ATTTACTTATTTTAAAATAAA
1 ATTTAATTATTTTAAAATAAA
*
255112 ATTTAATTATTTTCAAATAA
1 ATTTAATTATTTTAAAATAA
255132 GTTGGCTAGT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.46, C:0.05, G:0.00, T:0.49
Consensus pattern (21 bp):
ATTTAATTATTTTAAAATAAA
Found at i:255828 original size:58 final size:58
Alignment explanation
Indices: 255758--255873 Score: 223
Period size: 58 Copynumber: 2.0 Consensus size: 58
255748 CGAGATCTCG
*
255758 TTTCCATAAATCGAATCCGTAAATTCTGTTATTAAATCACACCCAACGATTTTGTGAT
1 TTTCCATAAATCGAATCCGTAAATTCCGTTATTAAATCACACCCAACGATTTTGTGAT
255816 TTTCCATAAATCGAATCCGTAAATTCCGTTATTAAATCACACCCAACGATTTTGTGAT
1 TTTCCATAAATCGAATCCGTAAATTCCGTTATTAAATCACACCCAACGATTTTGTGAT
255874 CTACTTTTGA
Statistics
Matches: 57, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
58 57 1.00
ACGTcount: A:0.33, C:0.22, G:0.10, T:0.35
Consensus pattern (58 bp):
TTTCCATAAATCGAATCCGTAAATTCCGTTATTAAATCACACCCAACGATTTTGTGAT
Found at i:257323 original size:26 final size:28
Alignment explanation
Indices: 257293--257346 Score: 76
Period size: 27 Copynumber: 2.0 Consensus size: 28
257283 CTAGTGAAAA
* *
257293 TTTAA-TGTTCGAATGTATGCT-GAATT
1 TTTAAGTGTCCGAATGCATGCTAGAATT
257319 TTTAAGTGTCCGAATGCATGCTAGAATT
1 TTTAAGTGTCCGAATGCATGCTAGAATT
257347 CAACATGTCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 5 0.21
27 14 0.58
28 5 0.21
ACGTcount: A:0.28, C:0.11, G:0.20, T:0.41
Consensus pattern (28 bp):
TTTAAGTGTCCGAATGCATGCTAGAATT
Found at i:259514 original size:18 final size:19
Alignment explanation
Indices: 259462--259517 Score: 60
Period size: 18 Copynumber: 2.8 Consensus size: 19
259452 TTACACTACG
259462 TTGTGGATAAAACCACTCATCT
1 TTGTGGAT-AAACCACTCA--T
**
259484 TTGTGGACGAACCACTCA-
1 TTGTGGATAAACCACTCAT
259502 TTGTGGATAAACCACT
1 TTGTGGATAAACCACT
259518 AGTAATAAAA
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
18 14 0.47
21 9 0.30
22 7 0.23
ACGTcount: A:0.30, C:0.23, G:0.18, T:0.29
Consensus pattern (19 bp):
TTGTGGATAAACCACTCAT
Found at i:261206 original size:27 final size:27
Alignment explanation
Indices: 261176--261233 Score: 73
Period size: 27 Copynumber: 2.1 Consensus size: 27
261166 TAAAATGATA
* *
261176 ATTTTACCCGTTAG-GGGTATTTTGGTC
1 ATTTTACCC-TTAGAGGGTATTTCGATC
*
261203 ATTTTACCCTTTGAGGGTATTTCGATC
1 ATTTTACCCTTAGAGGGTATTTCGATC
261230 ATTT
1 ATTT
261234 AACAACCTTT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
26 3 0.11
27 24 0.89
ACGTcount: A:0.17, C:0.16, G:0.21, T:0.47
Consensus pattern (27 bp):
ATTTTACCCTTAGAGGGTATTTCGATC
Found at i:265533 original size:18 final size:17
Alignment explanation
Indices: 265507--265545 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 17
265497 ATTTTCCTTC
265507 CACATTC-AATATTAATT
1 CACATTCAAATA-TAATT
265524 CACATATCAAATATAATT
1 CACAT-TCAAATATAATT
265542 CACA
1 CACA
265546 ATTTATAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
17 5 0.25
18 11 0.55
19 4 0.20
ACGTcount: A:0.46, C:0.21, G:0.00, T:0.33
Consensus pattern (17 bp):
CACATTCAAATATAATT
Found at i:269617 original size:9 final size:9
Alignment explanation
Indices: 269603--269631 Score: 58
Period size: 9 Copynumber: 3.2 Consensus size: 9
269593 TTTACATTGC
269603 ATTTCTCAT
1 ATTTCTCAT
269612 ATTTCTCAT
1 ATTTCTCAT
269621 ATTTCTCAT
1 ATTTCTCAT
269630 AT
1 AT
269632 ACAAATTGAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.24, C:0.21, G:0.00, T:0.55
Consensus pattern (9 bp):
ATTTCTCAT
Found at i:270665 original size:16 final size:16
Alignment explanation
Indices: 270644--270691 Score: 62
Period size: 16 Copynumber: 2.9 Consensus size: 16
270634 ATTGCTCTAA
270644 TATTTGATTTATTTTC
1 TATTTGATTTATTTTC
*
270660 TATTTGATTTATCTTATT
1 TATTTGATTTAT-TT-TC
270678 TATTT-ATTTATTTT
1 TATTTGATTTATTTT
270692 AATTGCTTTC
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
15 1 0.03
16 14 0.48
17 8 0.28
18 6 0.21
ACGTcount: A:0.21, C:0.04, G:0.04, T:0.71
Consensus pattern (16 bp):
TATTTGATTTATTTTC
Found at i:270682 original size:4 final size:4
Alignment explanation
Indices: 270644--270690 Score: 51
Period size: 4 Copynumber: 11.2 Consensus size: 4
270634 ATTGCTCTAA
*
270644 TATT TGATT TATT T-TC TATT TGATT TATCT TATT TATT TATT TATT T
1 TATT T-ATT TATT TATT TATT T-ATT TAT-T TATT TATT TATT TATT T
270691 TAATTGCTTT
Statistics
Matches: 37, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
3 2 0.05
4 23 0.62
5 12 0.32
ACGTcount: A:0.21, C:0.04, G:0.04, T:0.70
Consensus pattern (4 bp):
TATT
Found at i:273031 original size:24 final size:24
Alignment explanation
Indices: 273000--273061 Score: 72
Period size: 24 Copynumber: 2.6 Consensus size: 24
272990 CAACTCGTGA
273000 GAGCATCCC-ATTATTAGCTCTCAT
1 GAGCATCCCGA-TATTAGCTCTCAT
* *
273024 GAGCATCCCGATATTTGCTCTCTT
1 GAGCATCCCGATATTAGCTCTCAT
* *
273048 GAGCTTCCTGATAT
1 GAGCATCCCGATAT
273062 GTGGCTCTTA
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
24 32 0.97
25 1 0.03
ACGTcount: A:0.21, C:0.27, G:0.16, T:0.35
Consensus pattern (24 bp):
GAGCATCCCGATATTAGCTCTCAT
Found at i:273324 original size:25 final size:25
Alignment explanation
Indices: 273230--273312 Score: 132
Period size: 25 Copynumber: 3.4 Consensus size: 25
273220 TGGCTCTCCA
* * *
273230 GAGCTTCCTGATAT-TAGCTCGTAT
1 GAGCTTCCTGTTATACAGCTCGGAT
273254 GAGCTTCCTGTTATACAGCTCGGAT
1 GAGCTTCCTGTTATACAGCTCGGAT
273279 GAGCTTCCTGTTATACAGCTCGGAT
1 GAGCTTCCTGTTATACAGCTCGGAT
273304 GAGCTTCCT
1 GAGCTTCCT
273313 ATTACATGGC
Statistics
Matches: 55, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
24 13 0.24
25 42 0.76
ACGTcount: A:0.19, C:0.24, G:0.23, T:0.34
Consensus pattern (25 bp):
GAGCTTCCTGTTATACAGCTCGGAT
Found at i:273331 original size:50 final size:49
Alignment explanation
Indices: 273203--273343 Score: 142
Period size: 50 Copynumber: 2.8 Consensus size: 49
273193 AGGCTTTTTC
* * * *
273203 ATGAGCTTCCTAATTAATGGCTCTCCA-GAGCTTCCTGATAT-TAGCTCGT
1 ATGAGCTTCCT-ATTAATGGCTC-ACATGAGCTTCCTGTTATACAGCTCGG
* ** **
273252 ATGAGCTTCCTGTTATACAGCTCGGATGAGCTTCCTGTTATACAGCTCGG
1 ATGAGCTTCCTATTA-ATGGCTCACATGAGCTTCCTGTTATACAGCTCGG
*
273302 ATGAGCTTCCTATTACATGGCTCACATGAGCTTCCCGTTATA
1 ATGAGCTTCCTATTA-ATGGCTCACATGAGCTTCCTGTTATA
273344 TGGCTGAAAA
Statistics
Matches: 74, Mismatches: 15, Indels: 5
0.79 0.16 0.05
Matches are distributed among these distances:
48 4 0.05
49 29 0.39
50 41 0.55
ACGTcount: A:0.22, C:0.25, G:0.20, T:0.33
Consensus pattern (49 bp):
ATGAGCTTCCTATTAATGGCTCACATGAGCTTCCTGTTATACAGCTCGG
Found at i:280748 original size:24 final size:25
Alignment explanation
Indices: 280721--280779 Score: 75
Period size: 25 Copynumber: 2.4 Consensus size: 25
280711 CAGCTCGCAA
* *
280721 GAGCATCCCGATAT-TGGCTCTCTT
1 GAGCTTCCCGATATATGGCTCTCAT
**
280745 GAGCTTCCTAATATATGGCTCTCAT
1 GAGCTTCCCGATATATGGCTCTCAT
280770 GAGCTTCCCG
1 GAGCTTCCCG
280780 TTAATTACTC
Statistics
Matches: 28, Mismatches: 6, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
24 11 0.39
25 17 0.61
ACGTcount: A:0.19, C:0.29, G:0.20, T:0.32
Consensus pattern (25 bp):
GAGCTTCCCGATATATGGCTCTCAT
Found at i:280767 original size:25 final size:24
Alignment explanation
Indices: 280731--280777 Score: 76
Period size: 25 Copynumber: 1.9 Consensus size: 24
280721 GAGCATCCCG
*
280731 ATATTGGCTCTCTTGAGCTTCCTA
1 ATATTGGCTCTCATGAGCTTCCTA
280755 ATATATGGCTCTCATGAGCTTCC
1 ATAT-TGGCTCTCATGAGCTTCC
280778 CGTTAATTAC
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
24 4 0.19
25 17 0.81
ACGTcount: A:0.19, C:0.26, G:0.17, T:0.38
Consensus pattern (24 bp):
ATATTGGCTCTCATGAGCTTCCTA
Found at i:280995 original size:25 final size:25
Alignment explanation
Indices: 280967--281036 Score: 79
Period size: 25 Copynumber: 2.8 Consensus size: 25
280957 CTATTATACA
*
280967 GCTCGGATGAGCTTCCCGTTACATG
1 GCTCGAATGAGCTTCCCGTTACATG
* * *
280992 GCTC-ACATGGGTTTCCCGTTATATG
1 GCTCGA-ATGAGCTTCCCGTTACATG
*
281017 GCTCGAAAGAGCTTCCCGTT
1 GCTCGAATGAGCTTCCCGTT
281037 TATGTGCTCG
Statistics
Matches: 36, Mismatches: 7, Indels: 4
0.77 0.15 0.09
Matches are distributed among these distances:
25 35 0.97
26 1 0.03
ACGTcount: A:0.17, C:0.27, G:0.26, T:0.30
Consensus pattern (25 bp):
GCTCGAATGAGCTTCCCGTTACATG
Found at i:281060 original size:26 final size:25
Alignment explanation
Indices: 280975--281046 Score: 76
Period size: 25 Copynumber: 2.9 Consensus size: 25
280965 CAGCTCGGAT
* *
280975 GAGCTTCCCGTTACATGGCTC-ACAT
1 GAGCTTCCCGTTATATGGCTCGA-AA
* *
281000 GGGTTTCCCGTTATATGGCTCGAAA
1 GAGCTTCCCGTTATATGGCTCGAAA
281025 GAGCTTCCCGTT-TATGTGCTCG
1 GAGCTTCCCGTTATATG-GCTCG
281047 TATAAGCATT
Statistics
Matches: 39, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
24 4 0.10
25 34 0.87
26 1 0.03
ACGTcount: A:0.17, C:0.26, G:0.25, T:0.32
Consensus pattern (25 bp):
GAGCTTCCCGTTATATGGCTCGAAA
Found at i:287256 original size:50 final size:50
Alignment explanation
Indices: 287166--287261 Score: 111
Period size: 50 Copynumber: 1.9 Consensus size: 50
287156 TTATTAAGGT
** * * *
287166 TATGAGAGGTCCCACGTAAGACCATGTCTAGGAGATGGCATAGGCACCGA
1 TATGAGAACTCCCACGTAAGACCATATATAGGAGACGGCATAGGCACCGA
* * * *
287216 TATGAGAACTCCCATGTAAGACCATATATGGGATACGGCATTGGCA
1 TATGAGAACTCCCACGTAAGACCATATATAGGAGACGGCATAGGCA
287262 GTACAAGAAA
Statistics
Matches: 37, Mismatches: 9, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
50 37 1.00
ACGTcount: A:0.31, C:0.21, G:0.27, T:0.21
Consensus pattern (50 bp):
TATGAGAACTCCCACGTAAGACCATATATAGGAGACGGCATAGGCACCGA
Found at i:287537 original size:20 final size:20
Alignment explanation
Indices: 287512--287550 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
287502 TGAGTTATTT
287512 AAGTAAGCA-AGTAAGTAAAC
1 AAGTAAG-AGAGTAAGTAAAC
287532 AAGTAAGAGAGTAAGTAAA
1 AAGTAAGAGAGTAAGTAAA
287551 GAAGAAGTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 1 0.06
20 17 0.94
ACGTcount: A:0.56, C:0.05, G:0.23, T:0.15
Consensus pattern (20 bp):
AAGTAAGAGAGTAAGTAAAC
Found at i:291158 original size:43 final size:44
Alignment explanation
Indices: 291053--291167 Score: 139
Period size: 44 Copynumber: 2.6 Consensus size: 44
291043 TGAGTTATCG
* * *
291053 TGTAAGACCATGTCTGGGATGTTGGCATCGATTTGGAATTTACG
1 TGTAAGACCACGTCTGGGACGTTGGCATCGATTTGGAATTTACA
*
291097 TGTAAGACC-CTGTCTGGGACAG-TGGCATCGATGTTTG-A-TTACA
1 TGTAAGACCAC-GTCTGGGAC-GTTGGCATCGAT-TTGGAATTTACA
291140 TGTAAGACCACGTCTGGGACGTTGGCAT
1 TGTAAGACCACGTCTGGGACGTTGGCAT
291168 TGTACGAGCT
Statistics
Matches: 62, Mismatches: 4, Indels: 11
0.81 0.05 0.14
Matches are distributed among these distances:
42 1 0.02
43 28 0.45
44 29 0.47
45 4 0.06
ACGTcount: A:0.23, C:0.17, G:0.30, T:0.30
Consensus pattern (44 bp):
TGTAAGACCACGTCTGGGACGTTGGCATCGATTTGGAATTTACA
Found at i:293027 original size:38 final size:38
Alignment explanation
Indices: 292976--293053 Score: 138
Period size: 38 Copynumber: 2.1 Consensus size: 38
292966 TGGGAATTAG
292976 CTAAAGTATTGATCAAAAAAGAGTCAAATGACATGATA
1 CTAAAGTATTGATCAAAAAAGAGTCAAATGACATGATA
* *
293014 CTAAAGTATTGATCATAAAAGATTCAAATGACATGATA
1 CTAAAGTATTGATCAAAAAAGAGTCAAATGACATGATA
293052 CT
1 CT
293054 CTTTCTCTTG
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.47, C:0.12, G:0.14, T:0.27
Consensus pattern (38 bp):
CTAAAGTATTGATCAAAAAAGAGTCAAATGACATGATA
Found at i:295910 original size:18 final size:19
Alignment explanation
Indices: 295883--295918 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
295873 GGTTTTCTCA
*
295883 AAATGTAAATG-GAAATGG
1 AAATGAAAATGAGAAATGG
295901 AAATGAAAATGAGAAATG
1 AAATGAAAATGAGAAATG
295919 ATTCATTTGC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 10 0.62
19 6 0.38
ACGTcount: A:0.56, C:0.00, G:0.25, T:0.19
Consensus pattern (19 bp):
AAATGAAAATGAGAAATGG
Found at i:302899 original size:18 final size:18
Alignment explanation
Indices: 302871--302914 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
302861 TTAATAAATG
*
302871 TGAACTTGAAAATGAT-ATT
1 TGAA-TTGAAAA-GATGATA
302890 TGAATTGAAAAGATGATA
1 TGAATTGAAAAGATGATA
302908 TGAATTG
1 TGAATTG
302915 GTTTAACATG
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
17 3 0.13
18 16 0.70
19 4 0.17
ACGTcount: A:0.43, C:0.02, G:0.20, T:0.34
Consensus pattern (18 bp):
TGAATTGAAAAGATGATA
Found at i:303801 original size:21 final size:21
Alignment explanation
Indices: 303772--303820 Score: 89
Period size: 21 Copynumber: 2.3 Consensus size: 21
303762 ATGAGTGGCA
*
303772 TCGCTACCTAGAACCTTGATG
1 TCGCGACCTAGAACCTTGATG
303793 TCGCGACCTAGAACCTTGATG
1 TCGCGACCTAGAACCTTGATG
303814 TCGCGAC
1 TCGCGAC
303821 ATCAACCCGA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.22, C:0.31, G:0.22, T:0.24
Consensus pattern (21 bp):
TCGCGACCTAGAACCTTGATG
Found at i:309649 original size:57 final size:58
Alignment explanation
Indices: 309563--309684 Score: 158
Period size: 57 Copynumber: 2.1 Consensus size: 58
309553 AAATGAATAG
*
309563 AAATGGAGAAATATGAAACATTTGGAAATGATTAAGGTTTTCTCCAAAATAAAAATGA
1 AAATGGAGAAATATGAAACATTTGGAAATGAATAAGGTTTTCTCCAAAATAAAAATGA
** * * * *
309621 AAATGGAG-AA-ATGAAATCATTTGGAAATGAATGTGGTTTTGTTCAAAATGAAAATGG
1 AAATGGAGAAATATGAAA-CATTTGGAAATGAATAAGGTTTTCTCCAAAATAAAAATGA
309678 AAATGGA
1 AAATGGA
309685 AATAATAATG
Statistics
Matches: 56, Mismatches: 7, Indels: 3
0.85 0.11 0.05
Matches are distributed among these distances:
56 6 0.11
57 42 0.75
58 8 0.14
ACGTcount: A:0.46, C:0.05, G:0.21, T:0.28
Consensus pattern (58 bp):
AAATGGAGAAATATGAAACATTTGGAAATGAATAAGGTTTTCTCCAAAATAAAAATGA
Found at i:314619 original size:22 final size:20
Alignment explanation
Indices: 314588--314628 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 20
314578 TAACTTAAAA
314588 ATTTTAAAAATATATAAAAATT
1 ATTTTAAAAA-A-ATAAAAATT
*
314610 ATTTTTAAAAAATAAAAAT
1 ATTTTAAAAAAATAAAAAT
314629 CATTAAATTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 8 0.44
21 1 0.06
22 9 0.50
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (20 bp):
ATTTTAAAAAAATAAAAATT
Found at i:329567 original size:51 final size:51
Alignment explanation
Indices: 329451--329583 Score: 131
Period size: 51 Copynumber: 2.6 Consensus size: 51
329441 GTAAATGTTG
** * * * * *
329451 ACAAAATGGGTAAATGTTATGGGCTAAATTTGTTAAATTAGGACCAAGTTA
1 ACAAAATACGTAAATGTTGTGGGCTAAATTTATTAAATCAAGACCAAATTA
* *
329502 ACAAAATACATAAATGTTGTGGGCTAAATTTATTAAATCAAGACCAAATTG
1 ACAAAATACGTAAATGTTGTGGGCTAAATTTATTAAATCAAGACCAAATTA
* * * * * *
329553 ACACATTATGTAAATTTTGAGAGCTAAATTT
1 ACAAAATACGTAAATGTTGTGGGCTAAATTT
329584 GTTATTATAT
Statistics
Matches: 66, Mismatches: 16, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
51 66 1.00
ACGTcount: A:0.41, C:0.10, G:0.17, T:0.32
Consensus pattern (51 bp):
ACAAAATACGTAAATGTTGTGGGCTAAATTTATTAAATCAAGACCAAATTA
Found at i:339483 original size:44 final size:44
Alignment explanation
Indices: 339386--339548 Score: 245
Period size: 44 Copynumber: 3.5 Consensus size: 44
339376 ACCCAATTAC
339386 CCAACCCAATAAACTAAAGTCTACCCAAACCCAATTACCATTTACCAAGTA
1 CCAACCCAATAAACTAAAGTCTACCCAAACCCAATTACCA-TT------TA
339437 CCAACCCAATAAACTAAAGTCTACCCAAACCCAATTACCATTTA
1 CCAACCCAATAAACTAAAGTCTACCCAAACCCAATTACCATTTA
339481 CCAACCCAATAAACTAAAGTCTACCCAAACCCAATTACCATTTA
1 CCAACCCAATAAACTAAAGTCTACCCAAACCCAATTACCATTTA
*
339525 CCAATCCAATAAAACTAAAGTCTA
1 CCAACCCAAT-AAACTAAAGTCTA
339549 AAACTAAAGA
Statistics
Matches: 110, Mismatches: 1, Indels: 8
0.92 0.01 0.07
Matches are distributed among these distances:
44 55 0.50
45 13 0.12
50 2 0.02
51 40 0.36
ACGTcount: A:0.44, C:0.33, G:0.03, T:0.20
Consensus pattern (44 bp):
CCAACCCAATAAACTAAAGTCTACCCAAACCCAATTACCATTTA
Found at i:339552 original size:13 final size:13
Alignment explanation
Indices: 339534--339563 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
339524 ACCAATCCAA
*
339534 TAAAACTAAAGTC
1 TAAAACTAAAGAC
339547 TAAAACTAAAGAC
1 TAAAACTAAAGAC
339560 TAAA
1 TAAA
339564 TCTCTAACAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.60, C:0.13, G:0.07, T:0.20
Consensus pattern (13 bp):
TAAAACTAAAGAC
Found at i:340352 original size:27 final size:27
Alignment explanation
Indices: 340322--340374 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 27
340312 AAAAATTTTT
* *
340322 GGTTCGATTAATATTTAAAAAAAATTC
1 GGTTCGATTAACAGTTAAAAAAAATTC
* *
340349 GGTTCGGTTAACGGTTAAAAAAAATT
1 GGTTCGATTAACAGTTAAAAAAAATT
340375 TGAAGGTCGA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.42, C:0.08, G:0.17, T:0.34
Consensus pattern (27 bp):
GGTTCGATTAACAGTTAAAAAAAATTC
Found at i:343850 original size:13 final size:15
Alignment explanation
Indices: 343832--343863 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
343822 ATTTTAATAG
343832 TTTTTT-AATT-TAA
1 TTTTTTAAATTCTAA
343845 TTTTTTAAATTCTAA
1 TTTTTTAAATTCTAA
343860 TTTT
1 TTTT
343864 CTTTTGTTTG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
13 6 0.35
14 4 0.24
15 7 0.41
ACGTcount: A:0.28, C:0.03, G:0.00, T:0.69
Consensus pattern (15 bp):
TTTTTTAAATTCTAA
Found at i:346322 original size:51 final size:51
Alignment explanation
Indices: 346264--346451 Score: 238
Period size: 51 Copynumber: 3.7 Consensus size: 51
346254 CCGGTTCACA
*
346264 TAGTAGCCTGCACATAGTACTACACATGTGACCATCGCTATCTGGTACACG
1 TAGTAGCCTGCACATAGTACTACACACGTGACCATCGCTATCTGGTACACG
* ** * *
346315 TAGTAGCCTGCACATAGTACTACACACGTGATCAAAGCTAT-TCGGTACGCA
1 TAGTAGCCTGCACATAGTACTACACACGTGACCATCGCTATCT-GGTACACG
* * * *
346366 TAGTGGCCTGCACATAGTACTACACATGCGACCTATC-AT-TCTGGTACACG
1 TAGTAGCCTGCACATAGTACTACACACGTGACC-ATCGCTATCTGGTACACG
*
346416 TAGTTGCCTGCACATAGTACTACACACGTGACCATC
1 TAGTAGCCTGCACATAGTACTACACACGTGACCATC
346452 ACTTTCACTT
Statistics
Matches: 116, Mismatches: 18, Indels: 8
0.82 0.13 0.06
Matches are distributed among these distances:
49 3 0.03
50 38 0.33
51 74 0.64
52 1 0.01
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (51 bp):
TAGTAGCCTGCACATAGTACTACACACGTGACCATCGCTATCTGGTACACG
Found at i:346426 original size:101 final size:102
Alignment explanation
Indices: 346262--346446 Score: 311
Period size: 101 Copynumber: 1.8 Consensus size: 102
346252 TACCGGTTCA
* *
346262 CATAGTAGCCTGCACATAGTACTACACATGTGACCATCGCTATCTGGTACACGTAGTAGCCTGCA
1 CATAGTAGCCTGCACATAGTACTACACATGCGACCATCGATATCTGGTACACGTAGTAGCCTGCA
346327 CATAGTACTACACACGTGATCAAAGCTATTCGGTACG
66 CATAGTACTACACACGTGATCAAAGCTATTCGGTACG
* *
346364 CATAGTGGCCTGCACATAGTACTACACATGCGACCTATC-AT-TCTGGTACACGTAGTTGCCTGC
1 CATAGTAGCCTGCACATAGTACTACACATGCGACC-ATCGATATCTGGTACACGTAGTAGCCTGC
346427 ACATAGTACTACACACGTGA
65 ACATAGTACTACACACGTGA
346447 CCATCACTTT
Statistics
Matches: 78, Mismatches: 4, Indels: 3
0.92 0.05 0.04
Matches are distributed among these distances:
101 41 0.53
102 34 0.44
103 3 0.04
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.25
Consensus pattern (102 bp):
CATAGTAGCCTGCACATAGTACTACACATGCGACCATCGATATCTGGTACACGTAGTAGCCTGCA
CATAGTACTACACACGTGATCAAAGCTATTCGGTACG
Found at i:346469 original size:101 final size:102
Alignment explanation
Indices: 346257--346480 Score: 294
Period size: 101 Copynumber: 2.2 Consensus size: 102
346247 AATGATACCG
* * *
346257 GTTCACATAGTAGCCTGCACATAGTACTACACATGTGACCATCGCTATCTGGTACACGTAGTAGC
1 GTTCACATAGTGGCCTGCACATAGTACTACACATGCGACCATCGATATCTGGTACACGTAGTAGC
* *
346322 CTGCACATAGTACTACACACGTGATCAAAGCTATTCG
66 CTGCACATAGTACTACACACGTGACCAAAGCTATTCC
* * *
346359 GTACGCATAGTGGCCTGCACATAGTACTACACATGCGACCTATC-AT-TCTGGTACACGTAGTTG
1 GTTCACATAGTGGCCTGCACATAGTACTACACATGCGACC-ATCGATATCTGGTACACGTAGTAG
*
346422 CCTGCACATAGTACTACACACGTGACCATCA-CT-TTCAC
65 CCTGCACATAGTACTACACACGTGACCA-AAGCTATTC-C
* *
346460 TTTCACATAGTGGCCTACACA
1 GTTCACATAGTGGCCTGCACA
346481 CAGTCCATGC
Statistics
Matches: 106, Mismatches: 13, Indels: 7
0.84 0.10 0.06
Matches are distributed among these distances:
100 3 0.03
101 62 0.58
102 38 0.36
103 3 0.03
ACGTcount: A:0.28, C:0.28, G:0.18, T:0.26
Consensus pattern (102 bp):
GTTCACATAGTGGCCTGCACATAGTACTACACATGCGACCATCGATATCTGGTACACGTAGTAGC
CTGCACATAGTACTACACACGTGACCAAAGCTATTCC
Found at i:353288 original size:41 final size:41
Alignment explanation
Indices: 353231--353332 Score: 168
Period size: 41 Copynumber: 2.5 Consensus size: 41
353221 TCAATTCAGG
*
353231 GCAGGCTAAGTGCCGGTGAACTGAATCAGGCTATAAGCCTA
1 GCAGGCTAAGTGCCGGTGAACTAAATCAGGCTATAAGCCTA
* *
353272 GCAGGCTAAGTGCCGGTGATCTAAATCAGGCTTTAAGCCTA
1 GCAGGCTAAGTGCCGGTGAACTAAATCAGGCTATAAGCCTA
*
353313 GCAGGCTAAGTGCTGGTGAA
1 GCAGGCTAAGTGCCGGTGAA
353333 TCTGTTTTAA
Statistics
Matches: 56, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
41 56 1.00
ACGTcount: A:0.27, C:0.21, G:0.30, T:0.22
Consensus pattern (41 bp):
GCAGGCTAAGTGCCGGTGAACTAAATCAGGCTATAAGCCTA
Found at i:353637 original size:114 final size:114
Alignment explanation
Indices: 353455--354013 Score: 802
Period size: 114 Copynumber: 4.9 Consensus size: 114
353445 AAAATAAGCA
** * *
353455 TTAGCGGCGTTTTCCAGAAAGCACCGC-AAAATACCTAAGCCCAACGACGCCGTTTTCGGAGCTT
1 TTAGCGGCGTTTTTGAGAAAGCGCCGCAAAAATACCTAAGCCCAACGACGCCGTTTTCTGAGCTT
* *
353519 TCGGGGATTTAGCGGCGTTTTTAAGAAAGCGCCGCTAATGCTCAGGGCT
66 TCGGGGATTTAGTGGCGTTTTTAAGTAAGCGCCGCTAATGCTCAGGGCT
* * * * * *
353568 TTAGCGGCGTTTTTGAGAAAGCGCCACAAAAAAATCTAAGCCCAACAACGCCGTCTTCTGAGATT
1 TTAGCGGCGTTTTTGAGAAAGCGCCGCAAAAATACCTAAGCCCAACGACGCCGTTTTCTGAGCTT
* * *
353633 TCGGGGATTTAGTGGCGTTTTTAGGTAAGCGCTGCTAATGCTCAGGTCT
66 TCGGGGATTTAGTGGCGTTTTTAAGTAAGCGCCGCTAATGCTCAGGGCT
* *
353682 TTAGCGGCGTTTTTGAG-AAGCGCCGCAAAAATACCTAAGCCCAACAACACCGTTTTCTGAGCTT
1 TTAGCGGCGTTTTTGAGAAAGCGCCGCAAAAATACCTAAGCCCAACGACGCCGTTTTCTGAGCTT
* * *
353746 TCGGGGATTTAGTGGCATTTTTAAGTAAGCGTCGCTAATGCTTAGGGCT
66 TCGGGGATTTAGTGGCGTTTTTAAGTAAGCGCCGCTAATGCTCAGGGCT
* * * * *
353795 TTAGCGGCGTTTTTGGGAAAGCACCGCAAAAAGACCTAAGCACAACGACGCCGTTTTCCGAGCTT
1 TTAGCGGCGTTTTTGAGAAAGCGCCGCAAAAATACCTAAGCCCAACGACGCCGTTTTCTGAGCTT
* * **
353860 TCGGGGATTTAGTGGCATTTTTAAGTAAGCGCCGCTTATGCTCAGGTTT
66 TCGGGGATTTAGTGGCGTTTTTAAGTAAGCGCCGCTAATGCTCAGGGCT
* * *
353909 TTAGCGGCGTATTTGGGAAAGCGCCGCAAAAATACCTAATCCCAACGACGCCGTTTTCTGAGCTT
1 TTAGCGGCGTTTTTGAGAAAGCGCCGCAAAAATACCTAAGCCCAACGACGCCGTTTTCTGAGCTT
353974 TCGGGGATTTAGTGGCGTTTTTAAG--AGCGCCGCTAATGCT
66 TCGGGGATTTAGTGGCGTTTTTAAGTAAGCGCCGCTAATGCT
354014 TTAATTTTTA
Statistics
Matches: 397, Mismatches: 47, Indels: 5
0.88 0.10 0.01
Matches are distributed among these distances:
112 14 0.04
113 123 0.31
114 260 0.65
ACGTcount: A:0.24, C:0.23, G:0.26, T:0.27
Consensus pattern (114 bp):
TTAGCGGCGTTTTTGAGAAAGCGCCGCAAAAATACCTAAGCCCAACGACGCCGTTTTCTGAGCTT
TCGGGGATTTAGTGGCGTTTTTAAGTAAGCGCCGCTAATGCTCAGGGCT
Found at i:353864 original size:227 final size:227
Alignment explanation
Indices: 353455--354014 Score: 829
Period size: 227 Copynumber: 2.5 Consensus size: 227
353445 AAAATAAGCA
** * *
353455 TTAGCGGCGTTTTCCAGAAAGCACCGC-AAAATACCTAAGCCCAACGACGCCGTTTTCGGAGCTT
1 TTAGCGGCGTTTTTGAGAAAGCGCCGCAAAAATACCTAAGCCCAACGACGCCGTTTTCTGAGCTT
* *
353519 TCGGGGATTTAGCGGCGTTTTTAAGAAAGCGCCGCTAATGCTCAGGGCTTTAGCGGCGTTTTTGA
66 TCGGGGATTTAGTGGCGTTTTTAAG-AAGCGCCGCTAATGCTTAGGGCTTTAGCGGCGTTTTTGA
* * * *
353584 GAAAGCGCCACAAAAAAATCTAAGCCCAACAACGCCGTCTTCTGAGATTTCGGGGATTTAGTGGC
130 GAAAGCACCACAAAAAAACCTAAGCACAACAACGCCGTCTTCCGAGATTTCGGGGATTTAGTGGC
* * *
353649 GTTTTTAGGTAAGCGCTGCTAATGCTCAGGTCT
195 ATTTTTAAGTAAGCGCCGCTAATGCTCAGGTCT
* *
353682 TTAGCGGCGTTTTTGAG-AAGCGCCGCAAAAATACCTAAGCCCAACAACACCGTTTTCTGAGCTT
1 TTAGCGGCGTTTTTGAGAAAGCGCCGCAAAAATACCTAAGCCCAACGACGCCGTTTTCTGAGCTT
* * *
353746 TCGGGGATTTAGTGGCATTTTTAAGTAAGCGTCGCTAATGCTTAGGGCTTTAGCGGCGTTTTTGG
66 TCGGGGATTTAGTGGCGTTTTTAAG-AAGCGCCGCTAATGCTTAGGGCTTTAGCGGCGTTTTTGA
* * * * *
353811 GAAAGCACCGCAAAAAGACCTAAGCACAACGACGCCGTTTTCCGAGCTTTCGGGGATTTAGTGGC
130 GAAAGCACCACAAAAAAACCTAAGCACAACAACGCCGTCTTCCGAGATTTCGGGGATTTAGTGGC
* *
353876 ATTTTTAAGTAAGCGCCGCTTATGCTCAGGTTT
195 ATTTTTAAGTAAGCGCCGCTAATGCTCAGGTCT
* * *
353909 TTAGCGGCGTATTTGGGAAAGCGCCGCAAAAATACCTAATCCCAACGACGCCGTTTTCTGAGCTT
1 TTAGCGGCGTTTTTGAGAAAGCGCCGCAAAAATACCTAAGCCCAACGACGCCGTTTTCTGAGCTT
353974 TCGGGGATTTAGTGGCGTTTTTAAG-AGCGCCGCTAATGCTT
66 TCGGGGATTTAGTGGCGTTTTTAAGAAGCGCCGCTAATGCTT
354015 TAATTTTTAT
Statistics
Matches: 298, Mismatches: 33, Indels: 5
0.89 0.10 0.01
Matches are distributed among these distances:
226 23 0.08
227 207 0.69
228 68 0.23
ACGTcount: A:0.24, C:0.23, G:0.26, T:0.28
Consensus pattern (227 bp):
TTAGCGGCGTTTTTGAGAAAGCGCCGCAAAAATACCTAAGCCCAACGACGCCGTTTTCTGAGCTT
TCGGGGATTTAGTGGCGTTTTTAAGAAGCGCCGCTAATGCTTAGGGCTTTAGCGGCGTTTTTGAG
AAAGCACCACAAAAAAACCTAAGCACAACAACGCCGTCTTCCGAGATTTCGGGGATTTAGTGGCA
TTTTTAAGTAAGCGCCGCTAATGCTCAGGTCT
Found at i:354319 original size:125 final size:125
Alignment explanation
Indices: 354097--354350 Score: 445
Period size: 125 Copynumber: 2.0 Consensus size: 125
354087 ATTTAATGTA
*
354097 CAAAATATTCTTAATAATGAAGACAAAACGGTGCAGTTTTTGGCTGCGAATTTAATGGGTTTTGC
1 CAAAAAATTCTTAATAATGAAGACAAAACGGTGCAGTTTTTGGCTGCGAATTTAATGGGTTTTGC
* *
354162 AGCGCTAAGGGAAAAACGCCGCTAAAGATGGTCATTAGCGGTGCTAAGGAAAAAACGCCG
66 AGCACTAAGGGAAAAACGCCGCTAAAGATGGTCATTAGCGGCGCTAAGGAAAAAACGCCG
* *
354222 CAAAAAATTCTTAATAATGAAGACAAAACGGTGCAGTTTTTTGCTGTGAATTTAATGGGTTTTGC
1 CAAAAAATTCTTAATAATGAAGACAAAACGGTGCAGTTTTTGGCTGCGAATTTAATGGGTTTTGC
* *
354287 GGCACTAAGGGAAAAACGCCGCTAAAGGTGGTCATTAGCGGCGCTAAGGAAAAAACGCCG
66 AGCACTAAGGGAAAAACGCCGCTAAAGATGGTCATTAGCGGCGCTAAGGAAAAAACGCCG
354347 CAAA
1 CAAA
354351 GTTCTGTTCT
Statistics
Matches: 122, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
125 122 1.00
ACGTcount: A:0.35, C:0.16, G:0.25, T:0.24
Consensus pattern (125 bp):
CAAAAAATTCTTAATAATGAAGACAAAACGGTGCAGTTTTTGGCTGCGAATTTAATGGGTTTTGC
AGCACTAAGGGAAAAACGCCGCTAAAGATGGTCATTAGCGGCGCTAAGGAAAAAACGCCG
Found at i:354804 original size:199 final size:199
Alignment explanation
Indices: 354211--355162 Score: 1600
Period size: 199 Copynumber: 4.8 Consensus size: 199
354201 GGTGCTAAGG
* * *
354211 AAAAAACGCCGCAAAAAATTCTTAATAATGAAGACAAAACGGTGCAGTTTTTTGCTGTGAATTTA
1 AAAAAACGCCGCAAAATATTCTTAATAATGAAGACAAAACGGTGCAGTTTTTGGCTGCGAATTTA
*
354276 ATGGGTTTTGCGGCACTAAGGGAAAAACGCCGCTAAAGGTGGTCATTAGCGGCGCTAAGGAAAAA
66 ATGGGTTTTGCGGCGCTAAGGGAAAAACGCCGCTAAAGGTGGTCATTAGCGGCGCTAAGGAAAAA
354341 ACGCCGCAAAGTTCTGTTCTCAGTTTTCGTAAAACGGTGTCGTTTTGCCTGGGCATTAGTGGCGC
131 ACGCCGCAAAGTTCTGTTCTCAGTTTTCGTAAAACGGTGTCGTTTTGCCTGGGCATTAGTGGCGC
354406 TACT
196 TACT
* * * *
354410 AAAAAATGCCGCAAAATATTCTTAATAATAAAGACAAAACAGTGCAGTTTTTGGCCGCGAATTTA
1 AAAAAACGCCGCAAAATATTCTTAATAATGAAGACAAAACGGTGCAGTTTTTGGCTGCGAATTTA
*
354475 ATGGGTTTTGCGGCGCTAAGGGAAAAACGCTGCTAAAGGTGGTCA-TAGCGGCGCTAAGGAAAAA
66 ATGGGTTTTGCGGCGCTAAGGGAAAAACGCCGCTAAAGGTGGTCATTAGCGGCGCTAAGGAAAAA
*
354539 ACACCGCAAAGTTCTGTTCTCAGTTTTCGTAAAACGGTGTCGTTTTGCCTGGGCATTAGTGGCGC
131 ACGCCGCAAAGTTCTGTTCTCAGTTTTCGTAAAACGGTGTCGTTTTGCCTGGGCATTAGTGGCGC
**
354604 TAGA
196 TACT
354608 AAAAAACGCCGCAAAATATTCTTAATAATGAAGACAAAACGGTGCAGTTTTTGGCTGCGAATTTA
1 AAAAAACGCCGCAAAATATTCTTAATAATGAAGACAAAACGGTGCAGTTTTTGGCTGCGAATTTA
* * * *
354673 ATGGGTTTTGCGGAGCTACGGTAAAAACGCCGCTAAATGTGGTCATTAGCGGCGCTAAGGAAAAA
66 ATGGGTTTTGCGGCGCTAAGGGAAAAACGCCGCTAAAGGTGGTCATTAGCGGCGCTAAGGAAAAA
*
354738 ACGCCGCAAAGTTCTGTTCTCAGTTTTCGTAAAACGGTGTCGTTTTTCCTGGGCATTAGTGGCGC
131 ACGCCGCAAAGTTCTGTTCTCAGTTTTCGTAAAACGGTGTCGTTTTGCCTGGGCATTAGTGGCGC
354803 TACT
196 TACT
* * * *
354807 AAAAAACGTCGTAAAAAATTCTTAATAATGAAGACAAAACGGTGCAGTTTTTGGCTGTGAATTTA
1 AAAAAACGCCGCAAAATATTCTTAATAATGAAGACAAAACGGTGCAGTTTTTGGCTGCGAATTTA
* *
354872 ATGGGTTTTGCGGCGCTAAGGGAAAAACGCCACTAAAGGTGGTCATTAGCGGCACTAAGGAAAAA
66 ATGGGTTTTGCGGCGCTAAGGGAAAAACGCCGCTAAAGGTGGTCATTAGCGGCGCTAAGGAAAAA
* *
354937 ACGCCGCAAAGTTCTGTTCTCAGTTTTCGTAAAACGGTGTCATTTTGCCTGGGCATTACTGGCGC
131 ACGCCGCAAAGTTCTGTTCTCAGTTTTCGTAAAACGGTGTCGTTTTGCCTGGGCATTAGTGGCGC
355002 TACT
196 TACT
* *
355006 AAAAAACGCCGCAAAAATATTCTTAATAATGAAGACAAAATGGTGTAGTTTTTGGCTGCGAATTT
1 AAAAAACGCCGC-AAAATATTCTTAATAATGAAGACAAAACGGTGCAGTTTTTGGCTGCGAATTT
* * ** *
355071 AATGGGTTTTGCGGCGTTAAGGTAAAAACGCCGCTAAATATGGTCATTAGCGGCACTAAGGAAAA
65 AATGGGTTTTGCGGCGCTAAGGGAAAAACGCCGCTAAAGGTGGTCATTAGCGGCGCTAAGGAAAA
355136 AACGCCGCAAAGTTCTGTTCTCAGTTT
130 AACGCCGCAAAGTTCTGTTCTCAGTTT
355163 ATATATCTAT
Statistics
Matches: 702, Mismatches: 49, Indels: 3
0.93 0.06 0.00
Matches are distributed among these distances:
198 186 0.26
199 381 0.54
200 135 0.19
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.27
Consensus pattern (199 bp):
AAAAAACGCCGCAAAATATTCTTAATAATGAAGACAAAACGGTGCAGTTTTTGGCTGCGAATTTA
ATGGGTTTTGCGGCGCTAAGGGAAAAACGCCGCTAAAGGTGGTCATTAGCGGCGCTAAGGAAAAA
ACGCCGCAAAGTTCTGTTCTCAGTTTTCGTAAAACGGTGTCGTTTTGCCTGGGCATTAGTGGCGC
TACT
Done.