Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: scaffold329
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1169685
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 72846 characters in sequence are not A, C, G, or T
File 3 of 4
Found at i:663925 original size:97 final size:97
Alignment explanation
Indices: 663759--663945 Score: 266
Period size: 97 Copynumber: 1.9 Consensus size: 97
663749 CCTTTAACAT
* * * *
663759 GTTCGCCACAAAGGTTTCCCTTTCCAAAGTTTTGCTACAAAGGTTGTCCTTTAACAGGTTCGCTA
1 GTTCGCCACAAAGGCTTCCCTTTCCAAAGTTTTGCCACAAAGGCTGTCCTTTAACAGGTTCGCCA
663824 CAAAGGCTTGCCTTTCCAGAGTTTTGCCACAG
66 CAAAGGCTTGCCTTTCCAGAGTTTTGCCACAG
* * * * * * *
663856 GTTCGCCACAAAGGCTTGCCTTTCTAAATTTTTGCCACAAAGGCTGTCTTTTTATAGGTTGGCCA
1 GTTCGCCACAAAGGCTTCCCTTTCCAAAGTTTTGCCACAAAGGCTGTCCTTTAACAGGTTCGCCA
*
663921 CAAAGGCTTGCCTTTCTAGAGTTTT
66 CAAAGGCTTGCCTTTCCAGAGTTTT
663946 TCTACAAAGG
Statistics
Matches: 78, Mismatches: 12, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
97 78 1.00
ACGTcount: A:0.22, C:0.24, G:0.20, T:0.34
Consensus pattern (97 bp):
GTTCGCCACAAAGGCTTCCCTTTCCAAAGTTTTGCCACAAAGGCTGTCCTTTAACAGGTTCGCCA
CAAAGGCTTGCCTTTCCAGAGTTTTGCCACAG
Found at i:663953 original size:29 final size:28
Alignment explanation
Indices: 663861--663964 Score: 95
Period size: 29 Copynumber: 3.6 Consensus size: 28
663851 CACAGGTTCG
*
663861 CCACAAAGGCTTGCCTTTCTAAATTTTT
1 CCACAAAGGCTTGCCTTTCTAAGTTTTT
* * * **
663889 GCCACAAAGGC-TGTCTTTTTATAGGTTGG
1 -CCACAAAGGCTTGCCTTTCTA-AGTTTTT
663918 CCACAAAGGCTTGCCTTTCTAGAGTTTTT
1 CCACAAAGGCTTGCCTTTCTA-AGTTTTT
*
663947 CTACAAAGG-TTGTCCTTT
1 CCACAAAGGCTTG-CCTTT
663965 TTCTGGTGTT
Statistics
Matches: 59, Mismatches: 13, Indels: 6
0.76 0.17 0.08
Matches are distributed among these distances:
28 21 0.36
29 38 0.64
ACGTcount: A:0.22, C:0.22, G:0.18, T:0.38
Consensus pattern (28 bp):
CCACAAAGGCTTGCCTTTCTAAGTTTTT
Found at i:666937 original size:19 final size:19
Alignment explanation
Indices: 666913--666966 Score: 99
Period size: 19 Copynumber: 2.8 Consensus size: 19
666903 AATCTTCAAG
666913 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
666932 GATATGTAATCTTAGATAT
1 GATATGCAATCTTAGATAT
666951 GATATGCAATCTTAGA
1 GATATGCAATCTTAGA
666967 AGATATGATT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 33 1.00
ACGTcount: A:0.37, C:0.09, G:0.17, T:0.37
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:666942 original size:36 final size:36
Alignment explanation
Indices: 666902--666973 Score: 94
Period size: 38 Copynumber: 2.0 Consensus size: 36
666892 TATGGAAACA
666902 TAATCTT-CA-AGGATATGCAATCTTAGATATGATATG
1 TAATCTTACATAGGATATGCAATCTTAGA-A-GATATG
* *
666938 TAATCTTAGATATGATATGCAATCTTAGAAGATATG
1 TAATCTTACATAGGATATGCAATCTTAGAAGATATG
666974 ATTTTGTAAT
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
36 13 0.41
37 2 0.06
38 17 0.53
ACGTcount: A:0.38, C:0.10, G:0.17, T:0.36
Consensus pattern (36 bp):
TAATCTTACATAGGATATGCAATCTTAGAAGATATG
Found at i:666957 original size:38 final size:40
Alignment explanation
Indices: 666913--666989 Score: 113
Period size: 38 Copynumber: 1.9 Consensus size: 40
666903 AATCTTCAAG
666913 GATATGCAATCTT-AGATATGA-TATGTAATCTTAGATAT
1 GATATGCAATCTTAAGATATGATTATGTAATCTTAGATAT
*
666951 GATATGCAATCTTAGAAGATATGATTTTGTAATCTTAGA
1 GATATGCAATCTT--AAGATATGATTATGTAATCTTAGA
666990 GATTTAATTT
Statistics
Matches: 34, Mismatches: 1, Indels: 4
0.87 0.03 0.10
Matches are distributed among these distances:
38 13 0.38
41 8 0.24
42 13 0.38
ACGTcount: A:0.36, C:0.08, G:0.17, T:0.39
Consensus pattern (40 bp):
GATATGCAATCTTAAGATATGATTATGTAATCTTAGATAT
Found at i:667211 original size:24 final size:24
Alignment explanation
Indices: 667184--667230 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
667174 CTTGTTCTTA
* *
667184 TTTTGTTGATTTGTGTATAGTTTT
1 TTTTATTGATTTGTATATAGTTTT
*
667208 TTTTATTGATTTGTATATTGTTT
1 TTTTATTGATTTGTATATAGTTT
667231 CTAATGAATA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.15, C:0.00, G:0.17, T:0.68
Consensus pattern (24 bp):
TTTTATTGATTTGTATATAGTTTT
Found at i:672112 original size:24 final size:23
Alignment explanation
Indices: 672085--672146 Score: 88
Period size: 24 Copynumber: 2.6 Consensus size: 23
672075 AATGATGATG
672085 GAAAAAAGGAAAAGAAAAAGAAAA
1 GAAAAAAGGAAAAGAAAAAG-AAA
*
672109 GAAAAAAGAAAAAGAAAAAGAAA
1 GAAAAAAGGAAAAGAAAAAGAAA
*
672132 GAAGAAGAGGAAAAG
1 GAA-AAAAGGAAAAG
672147 GAGAGGCCAA
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
23 6 0.18
24 28 0.82
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (23 bp):
GAAAAAAGGAAAAGAAAAAGAAA
Found at i:672145 original size:18 final size:17
Alignment explanation
Indices: 672089--672146 Score: 61
Period size: 16 Copynumber: 3.6 Consensus size: 17
672079 ATGATGGAAA
672089 AAAGGAAAAGAAA-AAG
1 AAAGGAAAAGAAAGAAG
*
672105 AAAAG-AAA-AAAGAA-
1 AAAGGAAAAGAAAGAAG
*
672119 AAAGAAAAAGAAAGAAG
1 AAAGGAAAAGAAAGAAG
672136 AAGAGGAAAAG
1 AA-AGGAAAAG
672147 GAGAGGCCAA
Statistics
Matches: 33, Mismatches: 4, Indels: 8
0.73 0.09 0.18
Matches are distributed among these distances:
14 6 0.18
15 8 0.24
16 10 0.30
17 2 0.06
18 7 0.21
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (17 bp):
AAAGGAAAAGAAAGAAG
Found at i:672145 original size:19 final size:19
Alignment explanation
Indices: 672094--672137 Score: 72
Period size: 19 Copynumber: 2.4 Consensus size: 19
672084 GGAAAAAAGG
672094 AAAAGAAAAAG-AAAAGAA
1 AAAAGAAAAAGAAAAAGAA
672112 AAAAGAAAAAGAAAAAGAA
1 AAAAGAAAAAGAAAAAGAA
*
672131 AGAAGAA
1 AAAAGAA
672138 GAGGAAAAGG
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
18 11 0.46
19 13 0.54
ACGTcount: A:0.82, C:0.00, G:0.18, T:0.00
Consensus pattern (19 bp):
AAAAGAAAAAGAAAAAGAA
Found at i:672148 original size:6 final size:6
Alignment explanation
Indices: 672087--672137 Score: 68
Period size: 6 Copynumber: 8.3 Consensus size: 6
672077 TGATGATGGA
*
672087 AAAAAG GAAAAG AAAAAG -AAAAG AAAAAAG AAAAAG AAAAAG AAAGAAG
1 AAAAAG AAAAAG AAAAAG AAAAAG -AAAAAG AAAAAG AAAAAG AAA-AAG
672136 AA
1 AA
672138 GAGGAAAAGG
Statistics
Matches: 40, Mismatches: 2, Indels: 5
0.85 0.04 0.11
Matches are distributed among these distances:
5 5 0.12
6 25 0.62
7 10 0.25
ACGTcount: A:0.80, C:0.00, G:0.20, T:0.00
Consensus pattern (6 bp):
AAAAAG
Found at i:674101 original size:44 final size:43
Alignment explanation
Indices: 673915--674384 Score: 245
Period size: 44 Copynumber: 10.8 Consensus size: 43
673905 AGATGGCGAA
* * * *
673915 TCTTATCTCCCTGAAGTTGTAGTGGAGAAGA-TTA-AAGCCAATAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGAAG-C-A-AG
* * ** * *
673959 TCCTATCTCCCTAAAGTCACAGTGGAGCGGA-TGAA-AATCACAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACT-AAGAAGCA-AG
* * * * * *
674002 ATCTTATCTCTCTGAAGTTGCAG-AGAGCAGA-T-TGCATCTAG
1 -TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGAAGCAAG
674043 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAG-AAGCAAG
* * *
674087 CCTTATC-CTCCTGAAGTTGTAGT-GAGGCAGACTGAAGATGGCGAA-
1 TCTTATCTC-CCTGAAGTTGCAGTGGA-GCAGACT-AAGA-AGC-AAG
* * * *
674132 TCGTATCTCCCTGAAGTTACAGTGGAGCAGATTAATGCCAA-TAA-
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAA-G--AAGCAAG
* ** * *
674176 TCCTATCTCCCTGAAGTTGCAGTGGAGTGGATTAA-AATCACAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGAAGCA-AG
** * * * * **
674219 ATCTTATCTATCTGAAGTTGCAG-AGAGCAGA-TCA-CATCGGG
1 -TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGAAGCAAG
* *
674260 TCTTATCTCCCTGAAGTTCCAGTGGAGCAGACCTAAGAAAGCGAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGA-CTAAG-AAGCAAG
* *
674305 TCTTATCTCCCTGAATTTGCAGTGGAGCAGACTCAAGAAATCAAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACT-AAG-AAGCAAG
* *
674350 TCTTATC-CCCTTGAAATTGCAGTGGGGCAGACTAA
1 TCTTATCTCCC-TGAAGTTGCAGTGGAGCAGACTAA
674385 ATAAATAAAT
Statistics
Matches: 332, Mismatches: 66, Indels: 56
0.73 0.15 0.12
Matches are distributed among these distances:
40 42 0.13
41 18 0.05
42 10 0.03
43 20 0.06
44 135 0.41
45 101 0.30
46 5 0.02
47 1 0.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (43 bp):
TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGAAGCAAG
Found at i:674162 original size:45 final size:44
Alignment explanation
Indices: 674046--674384 Score: 146
Period size: 45 Copynumber: 7.7 Consensus size: 44
674036 CATCTAGTCT
*
674046 TATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAGCCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAGCCG
* * *
674090 TATC-CTCCTGAAGTTGTAGT-GAGGCAGACTGAAG-ATGGCGAA-TCG
1 TATCTC-CCTGAAGTTGCAGTGGA-GCAGACT-AAGTA-AGC-AAGCCG
* * * * *
674135 TATCTCCCTGAAGTTACAGTGGAGCAGATTAATGCCAA-TAATCC-
1 TATCTCCCTGAAGTTGCAGTGGAGCAGACTAA-G-TAAGCAAGCCG
** * * * *
674179 TATCTCCCTGAAGTTGCAGTGGAGTGGATTAA--AATCACAGATCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCA-AG-CCG
** * * * * ** * *
674223 TATCTATCTGAAGTTGCAG-AGAGCAGA-TCA--CATCGGGTCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAGCCG
* * * * *
674263 TATCTCCCTGAAGTTCCAGTGGAGCAGACCTAAGAAAGCGAGTCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGA-CTAAGTAAGCAAGCCG
* * * * *
674308 TATCTCCCTGAATTTGCAGTGGAGCAGACTCAAGAAATCAAGTCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGACT-AAGTAAGCAAGCCG
* *
674353 TATC-CCCTTGAAATTGCAGTGGGGCAGACTAA
1 TATCTCCC-TGAAGTTGCAGTGGAGCAGACTAA
674385 ATAAATAAAT
Statistics
Matches: 234, Mismatches: 39, Indels: 44
0.74 0.12 0.14
Matches are distributed among these distances:
40 21 0.09
41 9 0.04
42 6 0.03
43 11 0.05
44 82 0.35
45 99 0.42
46 5 0.02
47 1 0.00
ACGTcount: A:0.29, C:0.21, G:0.24, T:0.26
Consensus pattern (44 bp):
TATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAGCCG
Found at i:674285 original size:217 final size:218
Alignment explanation
Indices: 673898--674342 Score: 644
Period size: 217 Copynumber: 2.0 Consensus size: 218
673888 TCAATTTAAA
* **
673898 AGACTAAAGATGGCGAATCTTATCTCCCTGAAGTTGTAGTGGAGAAGATTAAAGCCAATAATCCT
1 AGACTAAAGATGGCGAATCGTATCTCCCTGAAGTTACAGTGGAGAAGATTAAAGCCAATAATCCT
*
673963 ATCTCCCTAAAGTCACAGTGGAGCGGATGAAAATCACAGATCTTATCTCTCTGAAGTTGCAGAGA
66 ATCTCCCTAAAGTCACAGTGGAGCGGATGAAAATCACAGATCTTATCTATCTGAAGTTGCAGAGA
** * * *
674028 GCAGATTGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGA-CTAAGTAAGCAAGCCTTA
131 GCAGATCACATCGAGTCTTATCTCCCTGAAGTTCCAGTGGAGCAGACCTAAGAAAGCAAGCCTTA
*
674092 TC-CTCCTGAAGTTGTAGT-GAGGC
196 TCTC-CCTGAAGTTGCAGTGGA-GC
* * *
674115 AGACTGAAGATGGCGAATCGTATCTCCCTGAAGTTACAGTGGAGCAGATTAATGCCAATAATCCT
1 AGACTAAAGATGGCGAATCGTATCTCCCTGAAGTTACAGTGGAGAAGATTAAAGCCAATAATCCT
* ** * *
674180 ATCTCCCTGAAGTTGCAGTGGAGTGGATTAAAATCACAGATCTTATCTATCTGAAGTTGCAGAGA
66 ATCTCCCTAAAGTCACAGTGGAGCGGATGAAAATCACAGATCTTATCTATCTGAAGTTGCAGAGA
* * *
674245 GCAGATCACATCGGGTCTTATCTCCCTGAAGTTCCAGTGGAGCAGACCTAAGAAAGCGAGTCTTA
131 GCAGATCACATCGAGTCTTATCTCCCTGAAGTTCCAGTGGAGCAGACCTAAGAAAGCAAGCCTTA
*
674310 TCTCCCTGAATTTGCAGTGGAGC
196 TCTCCCTGAAGTTGCAGTGGAGC
*
674333 AGACTCAAGA
1 AGACTAAAGA
674343 AATCAAGTCT
Statistics
Matches: 202, Mismatches: 23, Indels: 5
0.88 0.10 0.02
Matches are distributed among these distances:
217 159 0.79
218 40 0.20
219 3 0.01
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (218 bp):
AGACTAAAGATGGCGAATCGTATCTCCCTGAAGTTACAGTGGAGAAGATTAAAGCCAATAATCCT
ATCTCCCTAAAGTCACAGTGGAGCGGATGAAAATCACAGATCTTATCTATCTGAAGTTGCAGAGA
GCAGATCACATCGAGTCTTATCTCCCTGAAGTTCCAGTGGAGCAGACCTAAGAAAGCAAGCCTTA
TCTCCCTGAAGTTGCAGTGGAGC
Found at i:674912 original size:23 final size:23
Alignment explanation
Indices: 674864--674912 Score: 62
Period size: 23 Copynumber: 2.1 Consensus size: 23
674854 GCGTTCTTAT
* *
674864 TTTATTGATTTGTGTATAATTTA
1 TTTATTGATTTGTATATAATTGA
**
674887 TTTATTGATTTGTATATTGTTGA
1 TTTATTGATTTGTATATAATTGA
674910 TTT
1 TTT
674913 CAAATCTCTT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.22, C:0.00, G:0.14, T:0.63
Consensus pattern (23 bp):
TTTATTGATTTGTATATAATTGA
Found at i:678536 original size:68 final size:71
Alignment explanation
Indices: 678385--678536 Score: 159
Period size: 68 Copynumber: 2.2 Consensus size: 71
678375 TAAATATTAG
* *
678385 ATTAAATTTAATATCAAAGTAATAGAATATCTATATACAAGATAATTATTAAATTAAATTTAATA
1 ATTAAA-TTAATATCAAAGTAATAAAATATC-ATATACAAGATAAGTATTAAATTAAATTTAATA
*
678450 TTAAGATA
64 CTAAGATA
**** * *
678458 ATCGCTTTAATATTAAATTAATAAAATA-C-TAT-CAAGATAAGTATTAAATTAAATTTAATACT
1 ATTAAATTAATATCAAAGTAATAAAATATCATATACAAGATAAGTATTAAATTAAATTTAATACT
*
678520 AA-ATTT
66 AAGA-TA
678526 ATTAAATTAAT
1 ATTAAATTAAT
678537 TTATTTTTGA
Statistics
Matches: 64, Mismatches: 14, Indels: 7
0.75 0.16 0.08
Matches are distributed among these distances:
67 1 0.02
68 38 0.59
69 3 0.05
71 1 0.02
72 19 0.30
73 2 0.03
ACGTcount: A:0.51, C:0.05, G:0.05, T:0.39
Consensus pattern (71 bp):
ATTAAATTAATATCAAAGTAATAAAATATCATATACAAGATAAGTATTAAATTAAATTTAATACT
AAGATA
Found at i:682820 original size:27 final size:26
Alignment explanation
Indices: 682784--683060 Score: 311
Period size: 27 Copynumber: 10.3 Consensus size: 26
682774 TGAGGTCGAT
682784 AAATGACCGAAATACCCTCGTAGGGTA
1 AAATGACCGAAATACCC-CGTAGGGTA
682811 AAATGACCGAAATACCCCTGTAGGGTA
1 AAATGACCGAAATACCCC-GTAGGGTA
** *
682838 AAATGATTGAAACACCCCCGTAGGGTA
1 AAATGACCGAAATA-CCCCGTAGGGTA
*
682865 AAATGATCGAAATACCCCTGTAGGGTA
1 AAATGACCGAAATACCCC-GTAGGGTA
*
682892 AAATGACCGAAATACCCCCATAGGGTA
1 AAATGACCGAAATA-CCCCGTAGGGTA
* * *
682919 AAATAACTGAGATACCCCTGTAGGGTA
1 AAATGACCGAAATACCCC-GTAGGGTA
** * *
682946 AAATGACCGGGATACCCCCATAGGATA
1 AAATGACCGAAATA-CCCCGTAGGGTA
*
682973 AAATGATCGAAATACCCCCGTAGGGTA
1 AAATGACCGAAATA-CCCCGTAGGGTA
* *
683000 AAATTACTGAAATATCCCCGTAGGGTA
1 AAATGACCGAAATA-CCCCGTAGGGTA
* *
683027 AAATGATCGAAATACCCTCATAGGGTA
1 AAATGACCGAAATACCC-CGTAGGGTA
683054 AAATGAC
1 AAATGAC
683061 TATTATACCC
Statistics
Matches: 213, Mismatches: 30, Indels: 14
0.83 0.12 0.05
Matches are distributed among these distances:
26 12 0.06
27 189 0.89
28 12 0.06
ACGTcount: A:0.38, C:0.21, G:0.21, T:0.19
Consensus pattern (26 bp):
AAATGACCGAAATACCCCGTAGGGTA
Found at i:682866 original size:54 final size:54
Alignment explanation
Indices: 682784--683060 Score: 369
Period size: 54 Copynumber: 5.1 Consensus size: 54
682774 TGAGGTCGAT
* *
682784 AAATGACCGAAATACCCTCGTAGGGTAAAATGACCGAAATACCCCTGTAGGGTA
1 AAATGACCGAAATACCCCCGTAGGGTAAAATGATCGAAATACCCCTGTAGGGTA
** *
682838 AAATGATTGAAACACCCCCGTAGGGTAAAATGATCGAAATACCCCTGTAGGGTA
1 AAATGACCGAAATACCCCCGTAGGGTAAAATGATCGAAATACCCCTGTAGGGTA
* * *
682892 AAATGACCGAAATACCCCCATAGGGTAAAAT-AACTGAGATACCCCTGTAGGGTA
1 AAATGACCGAAATACCCCCGTAGGGTAAAATGATC-GAAATACCCCTGTAGGGTA
** * * *
682946 AAATGACCGGGATACCCCCATAGGATAAAATGATCGAAATACCCCCGTAGGGTA
1 AAATGACCGAAATACCCCCGTAGGGTAAAATGATCGAAATACCCCTGTAGGGTA
* * * *
683000 AAATTACTGAAATATCCCCGTAGGGTAAAATGATCGAAATA-CCCTCATAGGGTA
1 AAATGACCGAAATACCCCCGTAGGGTAAAATGATCGAAATACCCCT-GTAGGGTA
683054 AAATGAC
1 AAATGAC
683061 TATTATACCC
Statistics
Matches: 193, Mismatches: 27, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
53 5 0.03
54 186 0.96
55 2 0.01
ACGTcount: A:0.38, C:0.21, G:0.21, T:0.19
Consensus pattern (54 bp):
AAATGACCGAAATACCCCCGTAGGGTAAAATGATCGAAATACCCCTGTAGGGTA
Found at i:682919 original size:81 final size:81
Alignment explanation
Indices: 682784--683060 Score: 376
Period size: 81 Copynumber: 3.4 Consensus size: 81
682774 TGAGGTCGAT
* * * *
682784 AAATGACCGAAATACCCTCGTAGGGTAAAATGACCGAAATACCCCTGTAGGGTAAAATGATTGAA
1 AAATGACCGAAATACCCTCATAGGGTAAAATGACCGAAATACCCCCGTAGGGTAAAATAACTGAA
*
682849 ACACCCCCGTAGGGTA
66 ATACCCCCGTAGGGTA
* * *
682865 AAATGATCGAAATACCC-CTGTAGGGTAAAATGACCGAAATACCCCCATAGGGTAAAATAACTGA
1 AAATGACCGAAATACCCTC-ATAGGGTAAAATGACCGAAATACCCCCGTAGGGTAAAATAACTGA
* *
682929 GATACCCCTGTAGGGTA
65 AATACCCCCGTAGGGTA
** * * * *
682946 AAATGACCGGGATACCCCCATAGGATAAAATGATCGAAATACCCCCGTAGGGTAAAATTACTGAA
1 AAATGACCGAAATACCCTCATAGGGTAAAATGACCGAAATACCCCCGTAGGGTAAAATAACTGAA
*
683011 ATATCCCCGTAGGGTA
66 ATACCCCCGTAGGGTA
*
683027 AAATGATCGAAATACCCTCATAGGGTAAAATGAC
1 AAATGACCGAAATACCCTCATAGGGTAAAATGAC
683061 TATTATACCC
Statistics
Matches: 169, Mismatches: 25, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
80 1 0.01
81 167 0.99
82 1 0.01
ACGTcount: A:0.38, C:0.21, G:0.21, T:0.19
Consensus pattern (81 bp):
AAATGACCGAAATACCCTCATAGGGTAAAATGACCGAAATACCCCCGTAGGGTAAAATAACTGAA
ATACCCCCGTAGGGTA
Found at i:683230 original size:39 final size:39
Alignment explanation
Indices: 683187--683267 Score: 162
Period size: 39 Copynumber: 2.1 Consensus size: 39
683177 ATGACATGAC
683187 ATACTGCATAGGGTTGGGATACTGTTATGGAGGAAGTAT
1 ATACTGCATAGGGTTGGGATACTGTTATGGAGGAAGTAT
683226 ATACTGCATAGGGTTGGGATACTGTTATGGAGGAAGTAT
1 ATACTGCATAGGGTTGGGATACTGTTATGGAGGAAGTAT
683265 ATA
1 ATA
683268 GTTACTGGCA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 42 1.00
ACGTcount: A:0.30, C:0.07, G:0.32, T:0.31
Consensus pattern (39 bp):
ATACTGCATAGGGTTGGGATACTGTTATGGAGGAAGTAT
Found at i:683298 original size:26 final size:26
Alignment explanation
Indices: 683269--683369 Score: 148
Period size: 26 Copynumber: 3.9 Consensus size: 26
683259 AAGTATATAG
* *
683269 TTACTGGCAGCTTTGCTGCGATACTG
1 TTACTGGCAGCTTTGCTACGATACTA
*
683295 TTACTGGCAGCTTTGCTATGATACTA
1 TTACTGGCAGCTTTGCTACGATACTA
*
683321 TTACTGGCAGCTTCGCTACGATACTA
1 TTACTGGCAGCTTTGCTACGATACTA
* *
683347 TTGCTGGCAGCTTTGCTGCGATA
1 TTACTGGCAGCTTTGCTACGATA
683370 TTGGTGTGTT
Statistics
Matches: 67, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 67 1.00
ACGTcount: A:0.19, C:0.23, G:0.24, T:0.35
Consensus pattern (26 bp):
TTACTGGCAGCTTTGCTACGATACTA
Found at i:683518 original size:28 final size:28
Alignment explanation
Indices: 683477--683593 Score: 173
Period size: 28 Copynumber: 4.2 Consensus size: 28
683467 ACTATACCGA
*
683477 TACTGTATTGGGCTAAGGCCCGCATTGT
1 TACTGTATTGGGCTAAGGCCCACATTGT
* * *
683505 TACTGTATTAGGCTAAGGCACACATGGT
1 TACTGTATTGGGCTAAGGCCCACATTGT
683533 TACTGTATTGGGCTAAGGCCCACATTGT
1 TACTGTATTGGGCTAAGGCCCACATTGT
* *
683561 TACTGTATTGGGCTAAGGCCTACACTG-
1 TACTGTATTGGGCTAAGGCCCACATTGT
683588 TACTGT
1 TACTGT
683594 TACTGAATAG
Statistics
Matches: 80, Mismatches: 9, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
27 6 0.08
28 74 0.93
ACGTcount: A:0.22, C:0.21, G:0.26, T:0.32
Consensus pattern (28 bp):
TACTGTATTGGGCTAAGGCCCACATTGT
Found at i:685316 original size:50 final size:50
Alignment explanation
Indices: 685171--685316 Score: 204
Period size: 51 Copynumber: 2.9 Consensus size: 50
685161 TTAAAGATAC
685171 AAACTTTAACTAACAGTG-GAGTTACATAATGCATGTCATTATTTATGATGA
1 AAAC-TTAACTAACA-TGAGAGTTACATAATGCATGTCATTATTTATGATGA
* * *
685222 AAACTTAACTAATCATAAGAGTTACATAATGCATATCATTATTTATGATGC
1 AAACTTAACTAA-CATGAGAGTTACATAATGCATGTCATTATTTATGATGA
* * *
685273 ATACTTAACTAACATGAGAGTCACATAATGCATGTCATAATTTA
1 AAACTTAACTAACATGAGAGTTACATAATGCATGTCATTATTTA
685317 AAAGATGTAG
Statistics
Matches: 85, Mismatches: 8, Indels: 5
0.87 0.08 0.05
Matches are distributed among these distances:
50 37 0.44
51 48 0.56
ACGTcount: A:0.40, C:0.14, G:0.12, T:0.34
Consensus pattern (50 bp):
AAACTTAACTAACATGAGAGTTACATAATGCATGTCATTATTTATGATGA
Found at i:693874 original size:35 final size:36
Alignment explanation
Indices: 693822--693899 Score: 104
Period size: 35 Copynumber: 2.1 Consensus size: 36
693812 CCTCTTTTGA
* * *
693822 GGTGTTGCTTTGTAGAGCCTGTAG-ACCATTTTTAT
1 GGTGTTGCTCTGAAGAGCCTGTAGAACCATTTTCAT
693857 GGTGTTGCTCTGAAGAGCCTGTAGATAACCATTTTCAT
1 GGTGTTGCTCTGAAGAGCCTGTAG--AACCATTTTCAT
693895 GGTGT
1 GGTGT
693900 CGCCAAGCTT
Statistics
Matches: 37, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
35 22 0.59
38 15 0.41
ACGTcount: A:0.19, C:0.15, G:0.27, T:0.38
Consensus pattern (36 bp):
GGTGTTGCTCTGAAGAGCCTGTAGAACCATTTTCAT
Found at i:697281 original size:3 final size:3
Alignment explanation
Indices: 697273--697311 Score: 78
Period size: 3 Copynumber: 13.0 Consensus size: 3
697263 TTGAATTCTT
697273 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
697312 TCCACCAAAT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 36 1.00
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:697512 original size:39 final size:39
Alignment explanation
Indices: 697469--697558 Score: 117
Period size: 39 Copynumber: 2.3 Consensus size: 39
697459 ATAGTAGAAT
*
697469 AATTCATTTGAGCATTATTTAAACTTTTACTTGTGTAAA
1 AATTCATTTGAGCACTATTTAAACTTTTACTTGTGTAAA
* ** * *
697508 AATTCATTTAAGTGCTATTTAAAGTTTTACTTGTGTAAT
1 AATTCATTTGAGCACTATTTAAACTTTTACTTGTGTAAA
*
697547 AATTCACTTGAG
1 AATTCATTTGAG
697559 TACACATTAC
Statistics
Matches: 43, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
39 43 1.00
ACGTcount: A:0.32, C:0.10, G:0.12, T:0.46
Consensus pattern (39 bp):
AATTCATTTGAGCACTATTTAAACTTTTACTTGTGTAAA
Found at i:703011 original size:40 final size:40
Alignment explanation
Indices: 702875--703083 Score: 139
Period size: 40 Copynumber: 5.4 Consensus size: 40
702865 TTGTTGGTAC
*
702875 ATCCAACTAGCACTAGGCACACATTTGATATCGTCGGTTT
1 ATCCGACTAGCACTAGGCACACATTTGATATCGTCGGTTT
* * * * * * * **
702915 ACCCGAATAGCGCTAGGCGCA-A-CTCAT-T-GTTGGTAC
1 ATCCGACTAGCACTAGGCACACATTTGATATCGTCGGTTT
* * * *
702951 ATCCAACTAGTACTGGGCACACATTTGATATCGTCAGTTT
1 ATCCGACTAGCACTAGGCACACATTTGATATCGTCGGTTT
* * * *
702991 ATCCGACTAGCGCTAGGCACA-A-CTCAT-T-GCCGGTTT
1 ATCCGACTAGCACTAGGCACACATTTGATATCGTCGGTTT
** ** *
703027 ATTGGACTAGTGCT-GAGCACACATTTGATATCGTTGGTTT
1 ATCCGACTAGCACTAG-GCACACATTTGATATCGTCGGTTT
703067 ATCCGACTAGCACTAGG
1 ATCCGACTAGCACTAGG
703084 GGCAAAACTT
Statistics
Matches: 117, Mismatches: 42, Indels: 20
0.65 0.23 0.11
Matches are distributed among these distances:
35 1 0.01
36 41 0.35
37 4 0.03
38 12 0.10
39 4 0.03
40 54 0.46
41 1 0.01
ACGTcount: A:0.25, C:0.24, G:0.22, T:0.29
Consensus pattern (40 bp):
ATCCGACTAGCACTAGGCACACATTTGATATCGTCGGTTT
Found at i:703036 original size:76 final size:76
Alignment explanation
Indices: 702831--703083 Score: 281
Period size: 76 Copynumber: 3.3 Consensus size: 76
702821 TGCTGTATTT
* * * * ** ** * *
702831 GTCGCTTTATCTGACTAGCGTTGGGTGCAACTCATTGTTGGTACATCCAACTAGCACTAGGCACA
1 GTCGGTTTATCCGACTAGCGCTAGGCACAACTCATTGCCGGTACATCCAACTAGTACTGGGCACA
702896 CATTTGATATC
66 CATTTGATATC
* * * **
702907 GTCGGTTTACCCGAATAGCGCTAGGCGCAACTCATTGTTGGTACATCCAACTAGTACTGGGCACA
1 GTCGGTTTATCCGACTAGCGCTAGGCACAACTCATTGCCGGTACATCCAACTAGTACTGGGCACA
702972 CATTTGATATC
66 CATTTGATATC
* ** *** * *
702983 GTCAGTTTATCCGACTAGCGCTAGGCACAACTCATTGCCGGTTTATTGGACTAGTGCTGAGCACA
1 GTCGGTTTATCCGACTAGCGCTAGGCACAACTCATTGCCGGTACATCCAACTAGTACTGGGCACA
703048 CATTTGATATC
66 CATTTGATATC
* *
703059 GTTGGTTTATCCGACTAGCACTAGG
1 GTCGGTTTATCCGACTAGCGCTAGG
703084 GGCAAAACTT
Statistics
Matches: 152, Mismatches: 25, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
76 152 1.00
ACGTcount: A:0.24, C:0.24, G:0.23, T:0.30
Consensus pattern (76 bp):
GTCGGTTTATCCGACTAGCGCTAGGCACAACTCATTGCCGGTACATCCAACTAGTACTGGGCACA
CATTTGATATC
Found at i:706357 original size:99 final size:101
Alignment explanation
Indices: 706159--706373 Score: 274
Period size: 99 Copynumber: 2.1 Consensus size: 101
706149 CAATTATTCA
* * * * * *
706159 AACGTAAGACCATGGTTGGATCATGGTAGTGTATATATGTAAGGCCATAGCTGGGTTATATCATT
1 AACGTAAGACCATGGTTGGACCATGGCAGTGTATATATATAAGACCATAGCTGGGCTATAGCATT
* * *
706224 CTGATGATAAGACCATAAATGTGTTATGGCACTAT-
66 CTAATGATAAGACCATAAATGGGTTACGGCACTATG
* *
706259 AGACGTAAGACCATGGTTGGACCATGGCAGTGT-T-TATATAAGACCATAGTTGGGCTATGGCAT
1 A-ACGTAAGACCATGGTTGGACCATGGCAGTGTATATATATAAGACCATAGCTGGGCTATAGCAT
**
706322 TCTAATGATAAGACCATAGCTGGGTTACGGCACTATG
65 TCTAATGATAAGACCATAAATGGGTTACGGCACTATG
*
706359 AACTTAAGACCATGG
1 AACGTAAGACCATGG
706374 CAGGGCCATC
Statistics
Matches: 99, Mismatches: 14, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
99 67 0.68
100 3 0.03
101 29 0.29
ACGTcount: A:0.31, C:0.15, G:0.25, T:0.29
Consensus pattern (101 bp):
AACGTAAGACCATGGTTGGACCATGGCAGTGTATATATATAAGACCATAGCTGGGCTATAGCATT
CTAATGATAAGACCATAAATGGGTTACGGCACTATG
Found at i:706400 original size:99 final size:99
Alignment explanation
Indices: 706193--706416 Score: 243
Period size: 99 Copynumber: 2.3 Consensus size: 99
706183 GGTAGTGTAT
* * * ** * * *
706193 ATATGTAAGGCCATAGCTGGGTTATATCATTCTGATGATAAGACCATAAATGTGTTATGGCACTA
1 ATATGTAAGACCATAGTTGGGCTATGGCATTCTAATGATAAGACCATAAATGGGTTACGGCACTA
** * * * *
706258 TAGACGTAAGACCATGGTTGGACCATGGCAGTGT
66 TAGACGTAAGACCATGGCAGGACCATCGAAATGC
* * **
706292 TTATATAAGACCATAGTTGGGCTATGGCATTCTAATGATAAGACCATAGCTGGGTTACGGCACTA
1 ATATGTAAGACCATAGTTGGGCTATGGCATTCTAATGATAAGACCATAAATGGGTTACGGCACTA
* *
706357 T-GAACTTAAGACCATGGCAGGGCCATCGAAATGC
66 TAG-ACGTAAGACCATGGCAGGACCATCGAAATGC
*
706391 ATATGTAAGACCATAGTTGGACTATG
1 ATATGTAAGACCATAGTTGGGCTATG
706417 ACACAATAGG
Statistics
Matches: 101, Mismatches: 23, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
98 1 0.01
99 100 0.99
ACGTcount: A:0.31, C:0.17, G:0.25, T:0.28
Consensus pattern (99 bp):
ATATGTAAGACCATAGTTGGGCTATGGCATTCTAATGATAAGACCATAAATGGGTTACGGCACTA
TAGACGTAAGACCATGGCAGGACCATCGAAATGC
Found at i:707593 original size:108 final size:108
Alignment explanation
Indices: 707344--707664 Score: 477
Period size: 108 Copynumber: 3.0 Consensus size: 108
707334 TAAACTCAAT
** * * * **
707344 AGGATATTTGGCAATTTGGTTAAACGAG--AAATCGAAACCCAGCACCTTAGGGCACGTCCCTCG
1 AGGATATTAAGCAATTTGGTTGAACGAGAAAAATCGACACCCAGCACCTTAGGGCATGTTTCTCG
*
707407 AATTTCCAAACGCAAAACATTGCCTTATTTTGAAATTTTTAAAA
66 AATTTCCAAACGCAAAACATTGCCTTA-TTTAAAATTTTTAAAA
707451 AGGATATTAAGCAATTTGGTTGAACGAGAAAAATCGACACCCAGCACCTTAGGGCATGTTTTCTC
1 AGGATATTAAGCAATTTGGTTGAACGAGAAAAATCGACACCCAGCACCTTAGGGCATG-TTTCTC
* * *
707516 AAATTTCCAAACTCAAAACATTACCTTATTTAAAATTTTT-AAA
65 GAATTTCCAAACGCAAAACATTGCCTTATTTAAAATTTTTAAAA
*
707559 AGGATATTAAGCCATTTGGTTGAACGAGAAAAATCGACACCCAGCACCTTAGGGCATGATTTCTC
1 AGGATATTAAGCAATTTGGTTGAACGAGAAAAATCGACACCCAGCACCTTAGGGCATG-TTTCTC
707624 GAATTTCCAAACGCAAAACATTGCCTTATTTATAAATTTTT
65 GAATTTCCAAACGCAAAACATTGCCTTATTTA-AAATTTTT
707665 TTGTTTTTTG
Statistics
Matches: 194, Mismatches: 16, Indels: 6
0.90 0.07 0.03
Matches are distributed among these distances:
107 25 0.13
108 95 0.49
109 45 0.23
110 29 0.15
ACGTcount: A:0.36, C:0.20, G:0.15, T:0.30
Consensus pattern (108 bp):
AGGATATTAAGCAATTTGGTTGAACGAGAAAAATCGACACCCAGCACCTTAGGGCATGTTTCTCG
AATTTCCAAACGCAAAACATTGCCTTATTTAAAATTTTTAAAA
Found at i:707872 original size:26 final size:27
Alignment explanation
Indices: 707829--707882 Score: 67
Period size: 26 Copynumber: 2.0 Consensus size: 27
707819 CATTTTAAAG
*
707829 AATGAACATATAAAAAAATAAA-AATA
1 AATGAACATATAAAAAAACAAATAATA
*
707855 AATGAACAT-TAAGTAAAACAAATAATA
1 AATGAACATATAA-AAAAACAAATAATA
707882 A
1 A
707883 CAAAGAAGAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
25 3 0.12
26 16 0.67
27 5 0.21
ACGTcount: A:0.69, C:0.06, G:0.06, T:0.20
Consensus pattern (27 bp):
AATGAACATATAAAAAAACAAATAATA
Found at i:709727 original size:44 final size:44
Alignment explanation
Indices: 709673--709952 Score: 219
Period size: 44 Copynumber: 6.4 Consensus size: 44
709663 ATCTGCTCTG
*
709673 CTGCAACTTCAGAGAAATAAGATCTGTGGTTTTAATCCGCTCCA
1 CTGCAACTTCAGAGAGATAAGATCTGTGGTTTTAATCCGCTCCA
* * * * * ** ** *
709717 CTGTAACTTCAGGGAGATAGGATTTATTTTTTTCGTCTGCTCCA
1 CTGCAACTTCAGAGAGATAAGATCTGTGGTTTTAATCCGCTCCA
* *
709761 CTGCAACTTTAGATAGATAAGATCTGTGGTTTTAATCCGCTCCA
1 CTGCAACTTCAGAGAGATAAGATCTGTGGTTTTAATCCGCTCCA
* * * * ** **
709805 CTGTAACTTCAGGGAGATAGGAT-TGAT-TTCTTTCGTCTACTCCA
1 CTGCAACTTCAGAGAGATAAGATCTG-TGGT-TTTAATCCGCTCCA
* * * * *** * *
709849 CTGCAACTTTAGGGAGATAAG-GC--TGGATGCGATCTGCTCTA
1 CTGCAACTTCAGAGAGATAAGATCTGTGGTTTTAATCCGCTCCA
* *
709890 CTGTAACTTCAGAGAGATAAGATCTGTGGTTTTAATCCGCTCTA
1 CTGCAACTTCAGAGAGATAAGATCTGTGGTTTTAATCCGCTCCA
709934 CTGCAACTTCAGAGAGATA
1 CTGCAACTTCAGAGAGATA
709953 GGATTGATTT
Statistics
Matches: 174, Mismatches: 55, Indels: 14
0.72 0.23 0.06
Matches are distributed among these distances:
41 27 0.16
42 1 0.01
43 3 0.02
44 143 0.82
ACGTcount: A:0.26, C:0.20, G:0.21, T:0.33
Consensus pattern (44 bp):
CTGCAACTTCAGAGAGATAAGATCTGTGGTTTTAATCCGCTCCA
Found at i:709782 original size:88 final size:88
Alignment explanation
Indices: 709664--709869 Score: 331
Period size: 88 Copynumber: 2.3 Consensus size: 88
709654 TTGGATGCGA
** * *
709664 TCTGCTCTGCTGCAACTTCAGAGAAATAAGATCTGTGGTTTTAATCCGCTCCACTGTAACTTCAG
1 TCTGCTCCACTGCAACTTTAGAGAGATAAGATCTGTGGTTTTAATCCGCTCCACTGTAACTTCAG
* *
709729 GGAGATAGGATTTATTTTTTTCG
66 GGAGATAGGATTGATTTCTTTCG
*
709752 TCTGCTCCACTGCAACTTTAGATAGATAAGATCTGTGGTTTTAATCCGCTCCACTGTAACTTCAG
1 TCTGCTCCACTGCAACTTTAGAGAGATAAGATCTGTGGTTTTAATCCGCTCCACTGTAACTTCAG
709817 GGAGATAGGATTGATTTCTTTCG
66 GGAGATAGGATTGATTTCTTTCG
* *
709840 TCTACTCCACTGCAACTTTAGGGAGATAAG
1 TCTGCTCCACTGCAACTTTAGAGAGATAAG
709870 GCTGGATGCG
Statistics
Matches: 108, Mismatches: 10, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
88 108 1.00
ACGTcount: A:0.25, C:0.20, G:0.20, T:0.34
Consensus pattern (88 bp):
TCTGCTCCACTGCAACTTTAGAGAGATAAGATCTGTGGTTTTAATCCGCTCCACTGTAACTTCAG
GGAGATAGGATTGATTTCTTTCG
Found at i:709921 original size:129 final size:129
Alignment explanation
Indices: 709752--709996 Score: 400
Period size: 129 Copynumber: 1.9 Consensus size: 129
709742 ATTTTTTTCG
* * *
709752 TCTGCTCCACTGCAACTTTAGATAGATAAGATCTGTGGTTTTAATCCGCTCCACTGTAACTTCAG
1 TCTGCTCCACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTAATCCGCTCCACTGCAACTTCAG
* * *
709817 GGAGATAGGATTGATTTCTTTCGTCTACTCCACTGCAACTTTAGGGAGATAAGGCTGGATGCGA
66 AGAGATAGGATTGATTTCTTTCGTCTACTCCAATGCAACTTCAGGGAGATAAGGCTGGATGCGA
* * *
709881 TCTGCTCTACTGTAACTTCAGAGAGATAAGATCTGTGGTTTTAATCCGCTCTACTGCAACTTCAG
1 TCTGCTCCACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTAATCCGCTCCACTGCAACTTCAG
*
709946 AGAGATAGGATTGATTTCTTTCGTCTGCTCCAATGCAACTTCAGGGAGATA
66 AGAGATAGGATTGATTTCTTTCGTCTACTCCAATGCAACTTCAGGGAGATA
709997 GAATTATCGG
Statistics
Matches: 106, Mismatches: 10, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
129 106 1.00
ACGTcount: A:0.25, C:0.21, G:0.22, T:0.32
Consensus pattern (129 bp):
TCTGCTCCACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTAATCCGCTCCACTGCAACTTCAG
AGAGATAGGATTGATTTCTTTCGTCTACTCCAATGCAACTTCAGGGAGATAAGGCTGGATGCGA
Found at i:709983 original size:44 final size:43
Alignment explanation
Indices: 709618--709997 Score: 208
Period size: 44 Copynumber: 8.8 Consensus size: 43
709608 TCCATGTTTC
* *
709618 TTTT-GTCTGTTCCACTGCAACTTCAGGGAGATAAGATTGGA--
1 TTTTCGTCTGCTCCACTGCAACTTCAGGGAGATAGGATT-GATT
* ** * * * *
709659 --TGCGATCTGCTCTGCTGCAACTTCAGAGAAATAAGATCTG-TGG
1 TTTTCG-TCTGCTCCACTGCAACTTCAGGGAGATAGGAT-TGAT-T
** * * *
709702 TTTTAATCCGCTCCACTGTAACTTCAGGGAGATAGGATTTATTT
1 TTTTCGTCTGCTCCACTGCAACTTCAGGGAGATAGGATTGA-TT
* ** * *
709746 TTTTCGTCTGCTCCACTGCAACTTTAGATAGATAAGATCTG-TGG
1 TTTTCGTCTGCTCCACTGCAACTTCAGGGAGATAGGAT-TGAT-T
** * *
709790 TTTTAATCCGCTCCACTGTAACTTCAGGGAGATAGGATTGATT
1 TTTTCGTCTGCTCCACTGCAACTTCAGGGAGATAGGATTGATT
* * * *
709833 TCTTTCGTCTACTCCACTGCAACTTTAGGGAGATAAGGCTGGA--
1 T-TTTCGTCTGCTCCACTGCAACTTCAGGGAGAT-AGGATTGATT
* * * * * *
709876 --TGCGATCTGCTCTACTGTAACTTCAGAGAGATAAGATCTG-TGG
1 TTTTCG-TCTGCTCCACTGCAACTTCAGGGAGATAGGAT-TGAT-T
** * * *
709919 TTTTAATCCGCTCTACTGCAACTTCAGAGAGATAGGATTGATT
1 TTTTCGTCTGCTCCACTGCAACTTCAGGGAGATAGGATTGATT
*
709962 TCTTTCGTCTGCTCCAATGCAACTTCAGGGAGATAG
1 T-TTTCGTCTGCTCCACTGCAACTTCAGGGAGATAG
709998 AATTATCGGC
Statistics
Matches: 248, Mismatches: 67, Indels: 45
0.69 0.19 0.12
Matches are distributed among these distances:
39 1 0.00
40 7 0.03
41 51 0.21
42 1 0.00
43 8 0.03
44 170 0.69
45 10 0.04
ACGTcount: A:0.25, C:0.20, G:0.22, T:0.33
Consensus pattern (43 bp):
TTTTCGTCTGCTCCACTGCAACTTCAGGGAGATAGGATTGATT
Found at i:710579 original size:46 final size:45
Alignment explanation
Indices: 710507--710690 Score: 164
Period size: 46 Copynumber: 4.2 Consensus size: 45
710497 NNTGGCTTCA
*
710507 ATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTGAAATTCTTCG
1 ATCTACTCCACTGTAACCTCAGGGAGATAAGATCTGAAATT-TTCG
* * *
710553 GTCTACTCCACTGTAACCTCAGGGAGATAAGACCTG--A--TGCG
1 ATCTACTCCACTGTAACCTCAGGGAGATAAGATCTGAAATTTTCG
** * * ** *
710594 ATCTACTCTGCTGTAACTTCAGAGAGATAAGATCAT-TTATTTT-A
1 ATCTACTCCACTGTAACCTCAGGGAGATAAGATC-TGAAATTTTCG
* * * *
710638 ATCTGCTCCACTGTAACTTCAGGGAGATAGGATCTGAAATTCTTTG
1 ATCTACTCCACTGTAACCTCAGGGAGATAAGATCTGAAATT-TTCG
710684 ATCTACT
1 ATCTACT
710691 TCGCTGTCGA
Statistics
Matches: 109, Mismatches: 21, Indels: 16
0.75 0.14 0.11
Matches are distributed among these distances:
41 31 0.28
42 1 0.01
43 2 0.02
44 33 0.30
45 3 0.03
46 39 0.36
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.31
Consensus pattern (45 bp):
ATCTACTCCACTGTAACCTCAGGGAGATAAGATCTGAAATTTTCG
Found at i:711989 original size:13 final size:14
Alignment explanation
Indices: 711963--712031 Score: 97
Period size: 13 Copynumber: 5.0 Consensus size: 14
711953 TTAGCCTCTC
711963 CATTTTTCATTTTT
1 CATTTTTCATTTTT
711977 CATTTTTCA-TTTT
1 CATTTTTCATTTTT
711990 CATTTTTCATTTTT
1 CATTTTTCATTTTT
*
712004 CA-TTCTCATTTTT
1 CATTTTTCATTTTT
*
712017 CATTTATTTATTTTT
1 CATTT-TTCATTTTT
712032 TACTCAGAGT
Statistics
Matches: 49, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
13 25 0.51
14 17 0.35
15 7 0.14
ACGTcount: A:0.16, C:0.14, G:0.00, T:0.70
Consensus pattern (14 bp):
CATTTTTCATTTTT
Found at i:711991 original size:20 final size:20
Alignment explanation
Indices: 711966--712021 Score: 103
Period size: 20 Copynumber: 2.8 Consensus size: 20
711956 GCCTCTCCAT
711966 TTTTCATTTTTCATTTTTCA
1 TTTTCATTTTTCATTTTTCA
711986 TTTTCATTTTTCATTTTTCA
1 TTTTCATTTTTCATTTTTCA
*
712006 TTCTCATTTTTCATTT
1 TTTTCATTTTTCATTT
712022 ATTTATTTTT
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 35 1.00
ACGTcount: A:0.14, C:0.16, G:0.00, T:0.70
Consensus pattern (20 bp):
TTTTCATTTTTCATTTTTCA
Found at i:712033 original size:7 final size:7
Alignment explanation
Indices: 711963--712031 Score: 97
Period size: 7 Copynumber: 10.0 Consensus size: 7
711953 TTAGCCTCTC
711963 CATTTTT
1 CATTTTT
711970 CATTTTT
1 CATTTTT
711977 CATTTTT
1 CATTTTT
711984 CA-TTTT
1 CATTTTT
711990 CATTTTT
1 CATTTTT
711997 CATTTTT
1 CATTTTT
*
712004 CA-TTCT
1 CATTTTT
712010 CATTTTT
1 CATTTTT
712017 CATTTATT
1 CATTT-TT
*
712025 TATTTTT
1 CATTTTT
712032 TACTCAGAGT
Statistics
Matches: 56, Mismatches: 3, Indels: 6
0.86 0.05 0.09
Matches are distributed among these distances:
6 11 0.20
7 39 0.70
8 6 0.11
ACGTcount: A:0.16, C:0.14, G:0.00, T:0.70
Consensus pattern (7 bp):
CATTTTT
Found at i:716634 original size:108 final size:108
Alignment explanation
Indices: 716428--716712 Score: 455
Period size: 108 Copynumber: 2.6 Consensus size: 108
716418 ATGGATTTAA
* ** *
716428 ACCCAGCACCTTAGGGCACGTCCCTCGAATTTCCAAACGCAAAACATTGCCTTATTTTGAAATTT
1 ACCCAGCACCTTAGGGCATGTTTCTCGAATTTCCAAACGCAAAACATTGCCTTA-TTTAAAATTT
716493 TTAAAAAGGATATTAAGCAATTTGGTTGAACGAGAAAAATCGAC
65 TTAAAAAGGATATTAAGCAATTTGGTTGAACGAGAAAAATCGAC
* * *
716537 ACCCAGCACCTTAGGGCATGTTTTCTCAAATTTCCAAACTCAAAACATTACCTTATTTAAAATTT
1 ACCCAGCACCTTAGGGCATG-TTTCTCGAATTTCCAAACGCAAAACATTGCCTTATTTAAAATTT
*
716602 TT-AAAAGGATATTAAGCCATTTGGTTGAACGAGAAAAATCGAC
65 TTAAAAAGGATATTAAGCAATTTGGTTGAACGAGAAAAATCGAC
716645 ACCCAGCACCTTAGGGCATGATTTCTCGAATTTCCAAACGCAAAACATTGCCTTATTTATAAATT
1 ACCCAGCACCTTAGGGCATG-TTTCTCGAATTTCCAAACGCAAAACATTGCCTTATTTA-AAATT
716710 TTT
64 TTT
716713 TTGTTTTTTG
Statistics
Matches: 162, Mismatches: 12, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
108 95 0.59
109 38 0.23
110 29 0.18
ACGTcount: A:0.35, C:0.21, G:0.14, T:0.30
Consensus pattern (108 bp):
ACCCAGCACCTTAGGGCATGTTTCTCGAATTTCCAAACGCAAAACATTGCCTTATTTAAAATTTT
TAAAAAGGATATTAAGCAATTTGGTTGAACGAGAAAAATCGAC
Found at i:719427 original size:38 final size:38
Alignment explanation
Indices: 719371--719454 Score: 150
Period size: 38 Copynumber: 2.2 Consensus size: 38
719361 AAAAGTTTAT
719371 TGTGATTAATTTTTATGATTTACCGATTAATTGGATGCA
1 TGTG-TTAATTTTTATGATTTACCGATTAATTGGATGCA
*
719410 TGTGTTAATTTTTATGATTTACCGATTGATTGGATGCA
1 TGTGTTAATTTTTATGATTTACCGATTAATTGGATGCA
719448 TGTGTTA
1 TGTGTTA
719455 GAATATTGAT
Statistics
Matches: 44, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
38 40 0.91
39 4 0.09
ACGTcount: A:0.25, C:0.07, G:0.20, T:0.48
Consensus pattern (38 bp):
TGTGTTAATTTTTATGATTTACCGATTAATTGGATGCA
Found at i:725900 original size:13 final size:14
Alignment explanation
Indices: 725871--725902 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
725861 GTCCTAAAAT
725871 TCGGGTTAGTAGAA
1 TCGGGTTAGTAGAA
725885 TCGGGTTAGT-GAA
1 TCGGGTTAGTAGAA
725898 TCGGG
1 TCGGG
725903 AGTTAATGAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 8 0.44
14 10 0.56
ACGTcount: A:0.22, C:0.09, G:0.41, T:0.28
Consensus pattern (14 bp):
TCGGGTTAGTAGAA
Found at i:735520 original size:20 final size:20
Alignment explanation
Indices: 735495--735551 Score: 89
Period size: 20 Copynumber: 2.9 Consensus size: 20
735485 AGCTAATAAC
735495 GAGCTCGAATGAGCTGACTT
1 GAGCTCGAATGAGCTGACTT
*
735515 GAGCTCGAATGAACTGACTT
1 GAGCTCGAATGAGCTGACTT
735535 GAGCTC-AAGTGAGCTGA
1 GAGCTCGAA-TGAGCTGA
735552 ACCAAGGACG
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
19 2 0.06
20 32 0.94
ACGTcount: A:0.28, C:0.19, G:0.30, T:0.23
Consensus pattern (20 bp):
GAGCTCGAATGAGCTGACTT
Found at i:738493 original size:194 final size:194
Alignment explanation
Indices: 738159--738550 Score: 766
Period size: 194 Copynumber: 2.0 Consensus size: 194
738149 TTAGTGTTAA
*
738159 AATTAGGCGTATTCATAGTTATAAGAAACATAAGAAATTGTTAATGTGAGTTCATCTATGTTATG
1 AATTAGGCATATTCATAGTTATAAGAAACATAAGAAATTGTTAATGTGAGTTCATCTATGTTATG
738224 TAATAATTAAATCTAAGTTATCTGGAATCTGCCATATCTGAGTTGTATTATGCCCTTTTTCTGAA
66 TAATAATTAAATCTAAGTTATCTGGAATCTGCCATATCTGAGTTGTATTATGCCCTTTTTCTGAA
*
738289 ATTTAATTAAATCTGAGTTATTGTTATCCTTTGTATTTGGGGTCTTGTGATAAAGTTATTGTCG
131 ATTGAATTAAATCTGAGTTATTGTTATCCTTTGTATTTGGGGTCTTGTGATAAAGTTATTGTCG
738353 AATTAGGCATATTCATAGTTATAAGAAACATAAGAAATTGTTAATGTGAGTTCATCTATGTTATG
1 AATTAGGCATATTCATAGTTATAAGAAACATAAGAAATTGTTAATGTGAGTTCATCTATGTTATG
738418 TAATAATTAAATCTAAGTTATCTGGAATCTGCCATATCTGAGTTGTATTATGCCCTTTTTCTGAA
66 TAATAATTAAATCTAAGTTATCTGGAATCTGCCATATCTGAGTTGTATTATGCCCTTTTTCTGAA
738483 ATTGAATTAAATCTGAGTTATTGTTATCCTTTGTATTTGGGGTCTTGTGATAAAGTTATTGTCG
131 ATTGAATTAAATCTGAGTTATTGTTATCCTTTGTATTTGGGGTCTTGTGATAAAGTTATTGTCG
738547 AATT
1 AATT
738551 CATCTAAATT
Statistics
Matches: 196, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
194 196 1.00
ACGTcount: A:0.30, C:0.10, G:0.17, T:0.42
Consensus pattern (194 bp):
AATTAGGCATATTCATAGTTATAAGAAACATAAGAAATTGTTAATGTGAGTTCATCTATGTTATG
TAATAATTAAATCTAAGTTATCTGGAATCTGCCATATCTGAGTTGTATTATGCCCTTTTTCTGAA
ATTGAATTAAATCTGAGTTATTGTTATCCTTTGTATTTGGGGTCTTGTGATAAAGTTATTGTCG
Found at i:739198 original size:19 final size:20
Alignment explanation
Indices: 739166--739210 Score: 56
Period size: 19 Copynumber: 2.3 Consensus size: 20
739156 AGCCTGTTGT
*
739166 AATATTTTATTTTATT-TTA
1 AATATTTTACTTTATTCTTA
*
739185 AATATTTTCCTTTATTCTTA
1 AATATTTTACTTTATTCTTA
*
739205 GATATT
1 AATATT
739211 CAATCTTTCA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
19 14 0.64
20 8 0.36
ACGTcount: A:0.29, C:0.07, G:0.02, T:0.62
Consensus pattern (20 bp):
AATATTTTACTTTATTCTTA
Found at i:742611 original size:91 final size:92
Alignment explanation
Indices: 742452--742667 Score: 310
Period size: 91 Copynumber: 2.4 Consensus size: 92
742442 TGTACCAACA
* * * * *
742452 AGCTCTCAACATACATGCACAATCGGGTGCATGTTCTTCTTTAAAGTAGCTTCGTTGAATCTGGA
1 AGCTCCCAACATTCATGCACAATCGGGTGCATGTTCTTCATTAAAGTAGCTTCATTGAATCTGAA
* *
742517 AGATACATGTATGTCCAGCT-AAAAAC
66 AGATACATGAATGTCCAACTGAAAAAC
* *
742543 AGCTCCCAACATTCATGCACAATCAGATGCATGTTCTTCATTAAAGTAGCTTCATTGAATCTGAA
1 AGCTCCCAACATTCATGCACAATCGGGTGCATGTTCTTCATTAAAGTAGCTTCATTGAATCTGAA
*
742608 AGATACATGAATGTCCAACTGAAAAAT
66 AGATACATGAATGTCCAACTGAAAAAC
*
742635 AGCTCCTGAA-ATTCATGCACAATCGGGTGCATG
1 AGCTCC-CAACATTCATGCACAATCGGGTGCATG
742668 CTCCACATTA
Statistics
Matches: 110, Mismatches: 13, Indels: 3
0.87 0.10 0.02
Matches are distributed among these distances:
91 76 0.69
92 32 0.29
93 2 0.02
ACGTcount: A:0.33, C:0.21, G:0.18, T:0.28
Consensus pattern (92 bp):
AGCTCCCAACATTCATGCACAATCGGGTGCATGTTCTTCATTAAAGTAGCTTCATTGAATCTGAA
AGATACATGAATGTCCAACTGAAAAAC
Found at i:745921 original size:21 final size:21
Alignment explanation
Indices: 745897--745939 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
745887 GCTTTTATTC
*
745897 AAAACATACAA-TTTAATGGCT
1 AAAA-ATACAATTTTAAAGGCT
*
745918 AAAAATTCAATTTTAAAGGCT
1 AAAAATACAATTTTAAAGGCT
745939 A
1 A
745940 GATAACATTA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
20 5 0.26
21 14 0.74
ACGTcount: A:0.49, C:0.12, G:0.09, T:0.30
Consensus pattern (21 bp):
AAAAATACAATTTTAAAGGCT
Found at i:747971 original size:18 final size:20
Alignment explanation
Indices: 747948--747984 Score: 60
Period size: 18 Copynumber: 1.9 Consensus size: 20
747938 AGGTTGTAAT
747948 CTAAGTT-CAACC-TACTCA
1 CTAAGTTGCAACCTTACTCA
747966 CTAAGTTGCAACCTTACTC
1 CTAAGTTGCAACCTTACTC
747985 CTATGCATCC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 7 0.41
19 5 0.29
20 5 0.29
ACGTcount: A:0.30, C:0.32, G:0.08, T:0.30
Consensus pattern (20 bp):
CTAAGTTGCAACCTTACTCA
Found at i:749785 original size:100 final size:101
Alignment explanation
Indices: 749661--749863 Score: 390
Period size: 100 Copynumber: 2.0 Consensus size: 101
749651 AAATTGATCA
749661 TAATGATATTTGATCTCAAAAACACGATGTATGATAAATAATTAACTTTACTATTATAACTAAAG
1 TAATGATATTT-ATCTCAAAAACACGATGTATGATAAATAATTAACTTTACTATTATAACTAAAG
749726 AATCAAATTTTTATATGAATTTTAATAAATATATTTG
65 AATCAAATTTTTATATGAATTTTAATAAATATATTTG
749763 TAATGATATTT-TCTCAAAAACACGATGTATGATAAATAATTAACTTTACTATTATAACTAAAGA
1 TAATGATATTTATCTCAAAAACACGATGTATGATAAATAATTAACTTTACTATTATAACTAAAGA
749827 ATCAAATTTTTATATGAATTTTAATAAATATATTTG
66 ATCAAATTTTTATATGAATTTTAATAAATATATTTG
749863 T
1 T
749864 TAAATCTTTT
Statistics
Matches: 101, Mismatches: 0, Indels: 2
0.98 0.00 0.02
Matches are distributed among these distances:
100 90 0.89
102 11 0.11
ACGTcount: A:0.44, C:0.08, G:0.07, T:0.41
Consensus pattern (101 bp):
TAATGATATTTATCTCAAAAACACGATGTATGATAAATAATTAACTTTACTATTATAACTAAAGA
ATCAAATTTTTATATGAATTTTAATAAATATATTTG
Found at i:751764 original size:13 final size:13
Alignment explanation
Indices: 751746--751786 Score: 61
Period size: 13 Copynumber: 3.4 Consensus size: 13
751736 AAAGATAATC
751746 CTAAATATTATCA
1 CTAAATATTATCA
751759 CTAAATA--ATC-
1 CTAAATATTATCA
751769 CTAAATATTATCA
1 CTAAATATTATCA
751782 CTAAA
1 CTAAA
751787 GAATTCTAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
10 7 0.28
11 3 0.12
12 3 0.12
13 12 0.48
ACGTcount: A:0.49, C:0.17, G:0.00, T:0.34
Consensus pattern (13 bp):
CTAAATATTATCA
Found at i:751767 original size:23 final size:23
Alignment explanation
Indices: 751740--751810 Score: 115
Period size: 23 Copynumber: 3.1 Consensus size: 23
751730 AATGCGAAAG
751740 ATAATCCTAAATATTATCACTAA
1 ATAATCCTAAATATTATCACTAA
751763 ATAATCCTAAATATTATCACTAA
1 ATAATCCTAAATATTATCACTAA
* * *
751786 AGAATTCTAAATATTATCATTAA
1 ATAATCCTAAATATTATCACTAA
751809 AT
1 AT
751811 CAAATCAAAT
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 44 1.00
ACGTcount: A:0.48, C:0.14, G:0.01, T:0.37
Consensus pattern (23 bp):
ATAATCCTAAATATTATCACTAA
Found at i:751820 original size:23 final size:23
Alignment explanation
Indices: 751746--751820 Score: 91
Period size: 23 Copynumber: 3.3 Consensus size: 23
751736 AAAGATAATC
751746 CTAAATATTATCACTAAAT-AAT
1 CTAAATATTATCACTAAATAAAT
* *
751768 CCTAAATATTATCACTAAAGAATT
1 -CTAAATATTATCACTAAATAAAT
*
751792 CTAAATATTATCATTAAATCAAAT
1 CTAAATATTATCACTAAAT-AAAT
751816 C-AAAT
1 CTAAAT
751821 CAAACCGAAT
Statistics
Matches: 45, Mismatches: 5, Indels: 4
0.83 0.09 0.07
Matches are distributed among these distances:
23 39 0.87
24 6 0.13
ACGTcount: A:0.49, C:0.15, G:0.01, T:0.35
Consensus pattern (23 bp):
CTAAATATTATCACTAAATAAAT
Found at i:758794 original size:33 final size:33
Alignment explanation
Indices: 758747--758812 Score: 105
Period size: 33 Copynumber: 2.0 Consensus size: 33
758737 ATTACTTAGG
758747 CTTCATTTGGATTCAAACACAACACAATGCGTT
1 CTTCATTTGGATTCAAACACAACACAATGCGTT
* * *
758780 CTTCCTTTGGATTCAAGCACAACACGATGCGTT
1 CTTCATTTGGATTCAAACACAACACAATGCGTT
758813 GAAAATTTTT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.29, C:0.26, G:0.15, T:0.30
Consensus pattern (33 bp):
CTTCATTTGGATTCAAACACAACACAATGCGTT
Found at i:762334 original size:6 final size:6
Alignment explanation
Indices: 762323--762365 Score: 59
Period size: 6 Copynumber: 7.2 Consensus size: 6
762313 TGCCATCCTT
* * *
762323 AATCCC AATCCC AATCCC AATCCC AACCCC AACCCC AACCCC A
1 AATCCC AATCCC AATCCC AATCCC AATCCC AATCCC AATCCC A
762366 TCATCCCTTC
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
6 36 1.00
ACGTcount: A:0.35, C:0.56, G:0.00, T:0.09
Consensus pattern (6 bp):
AATCCC
Found at i:782891 original size:2 final size:2
Alignment explanation
Indices: 782886--782918 Score: 59
Period size: 2 Copynumber: 17.0 Consensus size: 2
782876 ACTTAAAACC
782886 AT AT AT AT AT AT AT AT AT AT AT AT AT AT -T AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
782919 TCACTAACAT
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 29 0.97
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
AT
Found at i:786980 original size:7 final size:6
Alignment explanation
Indices: 786958--787022 Score: 67
Period size: 6 Copynumber: 10.5 Consensus size: 6
786948 TAAGTCCACG
* * * *
786958 AAAATA ACAATA AAAACTA AAAATA AAAATA AACATA AACATA AAATAAA
1 AAAATA AAAATA AAAA-TA AAAATA AAAATA AAAATA AAAATA AAA-ATA
*
787008 AAAATA AAAAGA AAA
1 AAAATA AAAATA AAA
787023 CAAATAAACA
Statistics
Matches: 50, Mismatches: 7, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
6 39 0.78
7 11 0.22
ACGTcount: A:0.78, C:0.06, G:0.02, T:0.14
Consensus pattern (6 bp):
AAAATA
Found at i:787453 original size:17 final size:18
Alignment explanation
Indices: 787428--787462 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
787418 AAGGACTACT
*
787428 CCGATGTGTCGAG-GAGG
1 CCGAAGTGTCGAGTGAGG
787445 CCGAAGTGTCGAGTGAGG
1 CCGAAGTGTCGAGTGAGG
787463 TGAGTTACAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 12 0.75
18 4 0.25
ACGTcount: A:0.20, C:0.17, G:0.46, T:0.17
Consensus pattern (18 bp):
CCGAAGTGTCGAGTGAGG
Found at i:788587 original size:12 final size:11
Alignment explanation
Indices: 788566--788613 Score: 55
Period size: 11 Copynumber: 4.4 Consensus size: 11
788556 CAAATGAAGC
788566 ATAATAATAAA
1 ATAATAATAAA
788577 ATAATTAATAAA
1 ATAA-TAATAAA
*
788589 ATACTAA-ATAA
1 ATAATAATA-AA
788600 ATAA-AATAAA
1 ATAATAATAAA
788610 ATAA
1 ATAA
788614 AGAAAGCAAA
Statistics
Matches: 32, Mismatches: 2, Indels: 7
0.78 0.05 0.17
Matches are distributed among these distances:
10 9 0.28
11 13 0.41
12 10 0.31
ACGTcount: A:0.71, C:0.02, G:0.00, T:0.27
Consensus pattern (11 bp):
ATAATAATAAA
Found at i:798159 original size:42 final size:42
Alignment explanation
Indices: 798112--798283 Score: 344
Period size: 42 Copynumber: 4.1 Consensus size: 42
798102 TCCGTAGCAA
798112 AGAAATATGTTGGCAAATTGTATATCAAAGATAGAAGACAAT
1 AGAAATATGTTGGCAAATTGTATATCAAAGATAGAAGACAAT
798154 AGAAATATGTTGGCAAATTGTATATCAAAGATAGAAGACAAT
1 AGAAATATGTTGGCAAATTGTATATCAAAGATAGAAGACAAT
798196 AGAAATATGTTGGCAAATTGTATATCAAAGATAGAAGACAAT
1 AGAAATATGTTGGCAAATTGTATATCAAAGATAGAAGACAAT
798238 AGAAATATGTTGGCAAATTGTATATCAAAGATAGAAGACAAT
1 AGAAATATGTTGGCAAATTGTATATCAAAGATAGAAGACAAT
798280 AGAA
1 AGAA
798284 GTAAAGATAG
Statistics
Matches: 130, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 130 1.00
ACGTcount: A:0.48, C:0.07, G:0.19, T:0.26
Consensus pattern (42 bp):
AGAAATATGTTGGCAAATTGTATATCAAAGATAGAAGACAAT
Found at i:815592 original size:32 final size:31
Alignment explanation
Indices: 815556--815622 Score: 80
Period size: 32 Copynumber: 2.1 Consensus size: 31
815546 ATTAACATAT
* *
815556 TAAATTTTAATTAATTTTATAATAAATTTTCA
1 TAAATTTTAATTAATTTT-CAATAAATTTACA
* * *
815588 TAAATTTTGATTTATTTTCAATAGATTTACA
1 TAAATTTTAATTAATTTTCAATAAATTTACA
815619 TAAA
1 TAAA
815623 GGGTGAAAAT
Statistics
Matches: 30, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
31 14 0.47
32 16 0.53
ACGTcount: A:0.42, C:0.04, G:0.03, T:0.51
Consensus pattern (31 bp):
TAAATTTTAATTAATTTTCAATAAATTTACA
Found at i:817898 original size:15 final size:16
Alignment explanation
Indices: 817878--817907 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
817868 TGGTGCCCTG
817878 TTGAT-ATGTGTTAAT
1 TTGATAATGTGTTAAT
817893 TTGATAATGTGTTAA
1 TTGATAATGTGTTAA
817908 AGCATGTTTG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.30, C:0.00, G:0.20, T:0.50
Consensus pattern (16 bp):
TTGATAATGTGTTAAT
Found at i:821019 original size:47 final size:46
Alignment explanation
Indices: 820824--821020 Score: 150
Period size: 47 Copynumber: 4.2 Consensus size: 46
820814 TCGTTTTCTC
* * * *
820824 GATGCCATAGT-CCA-ACTATGGTATTACACGTAATTACATAATACATACT
1 GATGCCATA-TCCCAGA-TATGGTCTTACACGAAATCACAT-AT-CACA-T
* * * *
820873 GATGCCATAGCCCAGCTATGGTCTTACACG-GATCGCATATCACAT
1 GATGCCATATCCCAGATATGGTCTTACACGAAATCACATATCACAT
* * * * *
820918 AGATGCCATATCCCAAATATGGTCTTACAC-AGTAGCACATATTACACC
1 -GATGCCATATCCCAGATATGGTCTTACACGA-AATCACATATCACA-T
*
820966 GATGCCATATCCCAGATATGGTCTTATACGAAAATCACATATCACAT
1 GATGCCATATCCCAGATATGGTCTTACACG-AAATCACATATCACAT
*
821013 GTTGCCAT
1 GATGCCAT
821021 GGTCCAACCA
Statistics
Matches: 118, Mismatches: 22, Indels: 18
0.75 0.14 0.11
Matches are distributed among these distances:
45 1 0.01
46 29 0.25
47 46 0.39
48 16 0.14
49 26 0.22
ACGTcount: A:0.33, C:0.25, G:0.15, T:0.27
Consensus pattern (46 bp):
GATGCCATATCCCAGATATGGTCTTACACGAAATCACATATCACAT
Found at i:822450 original size:16 final size:16
Alignment explanation
Indices: 822425--822461 Score: 56
Period size: 16 Copynumber: 2.3 Consensus size: 16
822415 ATCATGATAT
*
822425 TTACTTTCTTCTTTAC
1 TTACTCTCTTCTTTAC
*
822441 TTACTCTCTTGTTTAC
1 TTACTCTCTTCTTTAC
822457 TTACT
1 TTACT
822462 TGCTTACTTA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.14, C:0.24, G:0.03, T:0.59
Consensus pattern (16 bp):
TTACTCTCTTCTTTAC
Found at i:831616 original size:74 final size:74
Alignment explanation
Indices: 831484--831634 Score: 248
Period size: 74 Copynumber: 2.0 Consensus size: 74
831474 GGTCGTGTGG
* *
831484 ACATTCGAAATAGGGACACACGGTCGTGTTCCAGCCCGTGTCCATACCCGTGTAGGTATACTAAC
1 ACATTCAAAATAGGGACACACGGTCATGTTCCAGCCCGTGTCCATACCCGTGTAGGTATACTAAC
831549 TTGTGACAC
66 TTGTGACAC
* * * *
831558 ACATTCAAAATAGGGACACACGGTCATGTTCTAGCCCGTGTCCATGCCCTTGTGGGTATACTAAC
1 ACATTCAAAATAGGGACACACGGTCATGTTCCAGCCCGTGTCCATACCCGTGTAGGTATACTAAC
831623 TTGTGACAC
66 TTGTGACAC
831632 ACA
1 ACA
831635 GCCAAGCAAC
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
74 71 1.00
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.25
Consensus pattern (74 bp):
ACATTCAAAATAGGGACACACGGTCATGTTCCAGCCCGTGTCCATACCCGTGTAGGTATACTAAC
TTGTGACAC
Found at i:835348 original size:16 final size:16
Alignment explanation
Indices: 835318--835347 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
835308 TCATTTTATT
835318 TTTCAATTTCTTTTTC
1 TTTCAATTTCTTTTTC
835334 TTTC-ATTTCTTTTT
1 TTTCAATTTCTTTTT
835348 TTCTTCTCTC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 10 0.71
16 4 0.29
ACGTcount: A:0.10, C:0.17, G:0.00, T:0.73
Consensus pattern (16 bp):
TTTCAATTTCTTTTTC
Found at i:837676 original size:20 final size:20
Alignment explanation
Indices: 837651--837688 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
837641 CGAAAAATGA
837651 TTTCTGGAAAATGATTTACT
1 TTTCTGGAAAATGATTTACT
837671 TTTCTGGAAAATGATTTA
1 TTTCTGGAAAATGATTTA
837689 TTGAAAATAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.32, C:0.08, G:0.16, T:0.45
Consensus pattern (20 bp):
TTTCTGGAAAATGATTTACT
Found at i:838308 original size:2 final size:2
Alignment explanation
Indices: 838301--838327 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
838291 AACATAAGAA
838301 AG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG A
838328 AGAAGTAATT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (2 bp):
AG
Found at i:846154 original size:14 final size:14
Alignment explanation
Indices: 846135--846182 Score: 57
Period size: 13 Copynumber: 3.6 Consensus size: 14
846125 AATATTTCAA
846135 AAAAGAAGAAGAAG
1 AAAAGAAGAAGAAG
846149 AAAAGATA-AAGAA-
1 AAAAGA-AGAAGAAG
846162 AAAAGAAGAA-AAG
1 AAAAGAAGAAGAAG
*
846175 AAATGAAG
1 AAAAGAAG
846183 GAGAGGCCAA
Statistics
Matches: 30, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
12 3 0.10
13 15 0.50
14 11 0.37
15 1 0.03
ACGTcount: A:0.73, C:0.00, G:0.23, T:0.04
Consensus pattern (14 bp):
AAAAGAAGAAGAAG
Found at i:846160 original size:11 final size:11
Alignment explanation
Indices: 846140--846176 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
846130 TTCAAAAAAG
846140 AAGAAGAAGAA
1 AAGAAGAAGAA
846151 AAGATA-AAGAA
1 AAGA-AGAAGAA
846162 AA-AAGAAGAA
1 AAGAAGAAGAA
846172 AAGAA
1 AAGAA
846177 ATGAAGGAGA
Statistics
Matches: 23, Mismatches: 0, Indels: 6
0.79 0.00 0.21
Matches are distributed among these distances:
9 1 0.04
10 8 0.35
11 13 0.57
12 1 0.04
ACGTcount: A:0.76, C:0.00, G:0.22, T:0.03
Consensus pattern (11 bp):
AAGAAGAAGAA
Found at i:846616 original size:93 final size:95
Alignment explanation
Indices: 846473--846652 Score: 256
Period size: 93 Copynumber: 1.9 Consensus size: 95
846463 TTGAATCTTG
*
846473 GCAAAATATGTTATCTTGATTAATTTATTCATTTCGAGCTTTGCTCTCAATAAAATTTCATCTTA
1 GCAAAATATGTTATCTTAATTAA--TATTCATTTCGAGCTTTGCTCTCAATAAAATTTCATCTTA
*
846538 TCCATTATGATAATCTTTTTCATCTTATTTTA
64 TCCATTATGATAATATTTTTCATCTTATTTTA
* * * * *
846570 GCAAAATTTGTTATCTTAATTAA-A-TCATTTCGAGCTTTGTTCTCAATAATATTTTATCTTGTC
1 GCAAAATATGTTATCTTAATTAATATTCATTTCGAGCTTTGCTCTCAATAAAATTTCATCTTATC
*
846633 CATTGTGATAATATTTTTCA
66 CATTATGATAATATTTTTCA
846653 AGCATTTTTC
Statistics
Matches: 75, Mismatches: 8, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
93 53 0.71
94 1 0.01
97 21 0.28
ACGTcount: A:0.29, C:0.14, G:0.08, T:0.48
Consensus pattern (95 bp):
GCAAAATATGTTATCTTAATTAATATTCATTTCGAGCTTTGCTCTCAATAAAATTTCATCTTATC
CATTATGATAATATTTTTCATCTTATTTTA
Found at i:847135 original size:24 final size:24
Alignment explanation
Indices: 847103--847160 Score: 89
Period size: 24 Copynumber: 2.4 Consensus size: 24
847093 ATGTCCCAAA
847103 ATTACAGTGGACTAAACCTTGAAG
1 ATTACAGTGGACTAAACCTTGAAG
* * *
847127 ATTACAGTGGATTGAACTTTGAAG
1 ATTACAGTGGACTAAACCTTGAAG
847151 ATTACAGTGG
1 ATTACAGTGG
847161 GGGCAATCCG
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 31 1.00
ACGTcount: A:0.34, C:0.12, G:0.24, T:0.29
Consensus pattern (24 bp):
ATTACAGTGGACTAAACCTTGAAG
Found at i:856747 original size:15 final size:16
Alignment explanation
Indices: 856718--856751 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
856708 TTTCTGTCCA
856718 TTTTCATTTTATTATT
1 TTTTCATTTTATTATT
856734 TTTTCATTTT-TTATT
1 TTTTCATTTTATTATT
856749 TTT
1 TTT
856752 CATAAACTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 8 0.44
16 10 0.56
ACGTcount: A:0.15, C:0.06, G:0.00, T:0.79
Consensus pattern (16 bp):
TTTTCATTTTATTATT
Found at i:857563 original size:13 final size:13
Alignment explanation
Indices: 857545--857569 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
857535 GGTTACTAAT
857545 TTTATTTTATTTA
1 TTTATTTTATTTA
857558 TTTATTTTATTT
1 TTTATTTTATTT
857570 GATATTTATT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (13 bp):
TTTATTTTATTTA
Found at i:857577 original size:20 final size:18
Alignment explanation
Indices: 857543--857581 Score: 60
Period size: 20 Copynumber: 2.1 Consensus size: 18
857533 ACGGTTACTA
857543 ATTTTATTTTATTTATTT
1 ATTTTATTTTATTTATTT
857561 ATTTTATTTGATATTTATTT
1 ATTTTATTT--TATTTATTT
857581 A
1 A
857582 ATTATTTGTT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 9 0.47
20 10 0.53
ACGTcount: A:0.26, C:0.00, G:0.03, T:0.72
Consensus pattern (18 bp):
ATTTTATTTTATTTATTT
Found at i:859813 original size:3 final size:3
Alignment explanation
Indices: 859807--860015 Score: 84
Period size: 3 Copynumber: 68.7 Consensus size: 3
859797 AAGATGATAG
* * *
859807 TAA TAA TAA T-A CAA TGA TAA TAA TAAA TAA TAA TAA TACA TTAT TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA T-AA TAA TAA TAA TA-A -TAA TAA
* * * * * * *
859854 -AC GAA TAA TAG TAG TAAA TAAA TAAA TAA GAG TAA TAA TAG TAA TAA
1 TAA TAA TAA TAA TAA T-AA T-AA T-AA TAA TAA TAA TAA TAA TAA TAA
** * * * * * * * *
859901 TAA TGG TAG TAA -AA TAA AAA CAA AAA AAA GTAA TAG TAA TAA CAT
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA -TAA TAA TAA TAA TAA
* **
859946 TAA TAA TAG TAA CGA -AA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* * * *
859993 TAA TGA TGA TGA TGA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TA
860016 GGAATAAAGT
Statistics
Matches: 159, Mismatches: 38, Indels: 18
0.74 0.18 0.08
Matches are distributed among these distances:
2 5 0.03
3 136 0.86
4 16 0.10
5 2 0.01
ACGTcount: A:0.60, C:0.03, G:0.09, T:0.29
Consensus pattern (3 bp):
TAA
Found at i:859817 original size:20 final size:20
Alignment explanation
Indices: 859792--859839 Score: 62
Period size: 20 Copynumber: 2.4 Consensus size: 20
859782 TAGTTTAAAG
*
859792 ATAATAAGATGATAGTAAT-A
1 ATAATAA-ATGATAATAATAA
859812 ATAATACAATGATAATAATAA
1 ATAATA-AATGATAATAATAA
859833 ATAATAA
1 ATAATAA
859840 TAATACATTA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
20 17 0.68
21 8 0.32
ACGTcount: A:0.60, C:0.02, G:0.08, T:0.29
Consensus pattern (20 bp):
ATAATAAATGATAATAATAA
Found at i:861863 original size:44 final size:43
Alignment explanation
Indices: 861805--862222 Score: 235
Period size: 44 Copynumber: 9.7 Consensus size: 43
861795 GATGTCATCT
* * *
861805 GCTCTACTGTAACTTCAGAGAGATAAGATCTATCATTTTAATCC
1 GCTCTACTGCAACTTCAGGGAGATAAGATCTGTC-TTTTAATCC
* * *
861849 GCTCTACTGCAACTTCAGGGAGATAGGAT-TGGCTTATTAAATCT
1 GCTCTACTGCAACTTCAGGGAGATAAGATCTGTCTT-TT-AATCC
* * *
861893 GCTCCACTGTAACTTCAGGGAGATAAGA-CTTGTGGTTTTAATCC
1 GCTCTACTGCAACTTCAGGGAGATAAGATC-TGT-CTTTTAATCC
* * *
861937 GCTCTACTGCAACTTCAGGGAGATAGGAT-TGGTTTCTTTT-GTCT
1 GCTCTACTGCAACTTCAGGGAGATAAGATCT-G--TCTTTTAATCC
* * * ** *** *
861981 ACTCCACTGCAACTTCAGGAAGATAAGA-CTG-GATGCGATCT
1 GCTCTACTGCAACTTCAGGGAGATAAGATCTGTCTTTTAATCC
* * *
862022 GCTCTACTGCAACTTCAGAGAGATAAGATTTGTGTTTTTAATCC
1 GCTCTACTGCAACTTCAGGGAGATAAGATCTGT-CTTTTAATCC
* * * ** *
862066 GCTCCACTGTAACTTCAGGGAGATAGGAT-TGGT-TTCTTCTGTCT
1 GCTCTACTGCAACTTCAGGGAGATAAGATCT-GTCTT-TT-AATCC
* * ** *** *
862110 GCTCCACTGCAACTTCAGGGAGATAAAAT-TG-GATGCGATCT
1 GCTCTACTGCAACTTCAGGGAGATAAGATCTGTCTTTTAATCC
* ** * * * *
862151 GTTCTACTTTAACTTAAGAGAGACAAGATCTGTGTTTTTAATCC
1 GCTCTACTGCAACTTCAGGGAGATAAGATCTGT-CTTTTAATCC
*
862195 GCTCTACTGCAACTTCAAGGAGATAAGA
1 GCTCTACTGCAACTTCAGGGAGATAAGA
862223 CTTGTTGCTG
Statistics
Matches: 279, Mismatches: 74, Indels: 42
0.71 0.19 0.11
Matches are distributed among these distances:
40 1 0.00
41 51 0.18
42 8 0.03
43 11 0.04
44 197 0.71
45 8 0.03
46 3 0.01
ACGTcount: A:0.27, C:0.20, G:0.21, T:0.32
Consensus pattern (43 bp):
GCTCTACTGCAACTTCAGGGAGATAAGATCTGTCTTTTAATCC
Found at i:861950 original size:88 final size:86
Alignment explanation
Indices: 861801--862265 Score: 368
Period size: 88 Copynumber: 5.4 Consensus size: 86
861791 GTCTGATGTC
* * * **
861801 ATCTGCTCTACTGTAACTTCAGAGAGATAAGATCTATCATTTTAATCCGCTCTACTGCAACTTCA
1 ATCTGCTCCACTGTAACTTCAGGGAGATAAGAT-TGTGGTTTTAATCCGCTCTACTGCAACTTCA
* *
861866 GGGAGATAGGATTGGCTTATTAA
65 GGGAGATAAGATTGG-TTATTTA
861889 ATCTGCTCCACTGTAACTTCAGGGAGATAAGACTTGTGGTTTTAATCCGCTCTACTGCAACTTCA
1 ATCTGCTCCACTGTAACTTCAGGGAGATAAGA-TTGTGGTTTTAATCCGCTCTACTGCAACTTCA
* * *
861954 GGGAGATAGGATTGGTTTCTTTT
65 GGGAGATAAGATTGG-TTATTTA
* * * * * * *** *
861977 GTCTACTCCACTGCAACTTCAGGAAGATAAGA--CTGGATGCGATCTGCTCTACTGCAACTTCAG
1 ATCTGCTCCACTGTAACTTCAGGGAGATAAGATTGTGGTTTTAATCCGCTCTACTGCAACTTCAG
*
862040 AGAGATAAGATTTGTGTT-TTTA
66 GGAGATAAGA-TTG-GTTATTTA
* * * ** * *
862062 ATCCGCTCCACTGTAACTTCAGGGAGATAGGATTG-GTTTCTTCTGTCTGCTCCACTGCAACTTC
1 ATCTGCTCCACTGTAACTTCAGGGAGATAAGATTGTGGTT-TT-AATCCGCTCTACTGCAACTTC
* ***
862126 AGGGAGATAAAATTGG--ATGCG
64 AGGGAGATAAGATTGGTTATTTA
* * * * * * *
862147 ATCTGTTCTACTTTAACTTAAGAGAGACAAGATCTGTGTTTTTAATCCGCTCTACTGCAACTTCA
1 ATCTGCTCCACTGTAACTTCAGGGAGATAAGAT-TGTGGTTTTAATCCGCTCTACTGCAACTTCA
* * **
862212 AGGAGATAAGACTT-GTTGCTGCA
65 GGGAGATAAGA-TTGGTT-ATTTA
* * *
862235 ACCTGCTCCACTGCAGCTTCAGGGAGATAAG
1 ATCTGCTCCACTGTAACTTCAGGGAGATAAG
862266 GTTTGACATG
Statistics
Matches: 297, Mismatches: 66, Indels: 28
0.76 0.17 0.07
Matches are distributed among these distances:
85 116 0.39
86 14 0.05
87 8 0.03
88 158 0.53
89 1 0.00
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (86 bp):
ATCTGCTCCACTGTAACTTCAGGGAGATAAGATTGTGGTTTTAATCCGCTCTACTGCAACTTCAG
GGAGATAAGATTGGTTATTTA
Found at i:862068 original size:129 final size:129
Alignment explanation
Indices: 861889--862219 Score: 500
Period size: 129 Copynumber: 2.6 Consensus size: 129
861879 GGCTTATTAA
* * * *
861889 ATCTGCTCCACTGTAACTTCAGGGAGATAAGACTTGTGGTTTTAATCCGCTCTACTGCAACTTCA
1 ATCTGCTCTACTGTAACTTCAGAGAGATAAGATTTGTGTTTTTAATCCGCTCTACTGCAACTTCA
* *
861954 GGGAGATAGGATTGGTTTCTTTTGTCTACTCCACTGCAACTTCAGGAAGATAAGACTGGATGCG
66 GGGAGATAGGATTGGTTTCTTCTGTCTACTCCACTGCAACTTCAGGAAGATAAAACTGGATGCG
* * *
862018 ATCTGCTCTACTGCAACTTCAGAGAGATAAGATTTGTGTTTTTAATCCGCTCCACTGTAACTTCA
1 ATCTGCTCTACTGTAACTTCAGAGAGATAAGATTTGTGTTTTTAATCCGCTCTACTGCAACTTCA
* * *
862083 GGGAGATAGGATTGGTTTCTTCTGTCTGCTCCACTGCAACTTCAGGGAGATAAAATTGGATGCG
66 GGGAGATAGGATTGGTTTCTTCTGTCTACTCCACTGCAACTTCAGGAAGATAAAACTGGATGCG
* * * * *
862147 ATCTGTTCTACTTTAACTTAAGAGAGACAAGATCTGTGTTTTTAATCCGCTCTACTGCAACTTCA
1 ATCTGCTCTACTGTAACTTCAGAGAGATAAGATTTGTGTTTTTAATCCGCTCTACTGCAACTTCA
*
862212 AGGAGATA
66 GGGAGATA
862220 AGACTTGTTG
Statistics
Matches: 181, Mismatches: 21, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
129 181 1.00
ACGTcount: A:0.26, C:0.20, G:0.21, T:0.32
Consensus pattern (129 bp):
ATCTGCTCTACTGTAACTTCAGAGAGATAAGATTTGTGTTTTTAATCCGCTCTACTGCAACTTCA
GGGAGATAGGATTGGTTTCTTCTGTCTACTCCACTGCAACTTCAGGAAGATAAAACTGGATGCG
Found at i:862241 original size:129 final size:129
Alignment explanation
Indices: 861889--862264 Score: 477
Period size: 129 Copynumber: 2.9 Consensus size: 129
861879 GGCTTATTAA
* * * * * *
861889 ATCTGCTCCACTGTAACTTCAGGGAGATAAGA-CTTGTGGTTTTAATCCGCTCTACTGCAACTTC
1 ATCTGCTCTACTGCAACTTAAGAGAGACAAGATC-TGTGTTTTTAATCCGCTCTACTGCAACTTC
* * * *
861953 AGGGAGATAGGATTGGTTTCTTTTGTCTACTCCACTGCAACTTCAGGAAGATAAGACTGGATGCG
65 AGGGAGATAGGATTGGTTTCTTCTGTCTGCTCCACTGCAACTTCAGGGAGATAAAACTGGATGCG
* * * * *
862018 ATCTGCTCTACTGCAACTTCAGAGAGATAAGATTTGTGTTTTTAATCCGCTCCACTGTAACTTCA
1 ATCTGCTCTACTGCAACTTAAGAGAGACAAGATCTGTGTTTTTAATCCGCTCTACTGCAACTTCA
*
862083 GGGAGATAGGATTGGTTTCTTCTGTCTGCTCCACTGCAACTTCAGGGAGATAAAATTGGATGCG
66 GGGAGATAGGATTGGTTTCTTCTGTCTGCTCCACTGCAACTTCAGGGAGATAAAACTGGATGCG
* **
862147 ATCTGTTCTACTTTAACTTAAGAGAGACAAGATCTGTGTTTTTAATCCGCTCTACTGCAACTTCA
1 ATCTGCTCTACTGCAACTTAAGAGAGACAAGATCTGTGTTTTTAATCCGCTCTACTGCAACTTCA
* * * * *** *
862212 AGGAGATAAGACTT-GTTGCTGCAACCTGCTCCACTGCAGCTTCAGGGAGATAA
66 GGGAGATAGGA-TTGGTTTCTTCTGTCTGCTCCACTGCAACTTCAGGGAGATAA
862265 GGTTTGACAT
Statistics
Matches: 217, Mismatches: 28, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
129 215 0.99
130 2 0.01
ACGTcount: A:0.26, C:0.21, G:0.22, T:0.31
Consensus pattern (129 bp):
ATCTGCTCTACTGCAACTTAAGAGAGACAAGATCTGTGTTTTTAATCCGCTCTACTGCAACTTCA
GGGAGATAGGATTGGTTTCTTCTGTCTGCTCCACTGCAACTTCAGGGAGATAAAACTGGATGCG
Found at i:862445 original size:44 final size:43
Alignment explanation
Indices: 862392--862531 Score: 154
Period size: 44 Copynumber: 3.2 Consensus size: 43
862382 TCATCATTTT
* * *
862392 AATCCGCTCCAGTGCAACTTCAGGGAGATAGGATTAGTAGCTTC
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGA-TAGTAGCTTC
* * *
862436 AATCTGCTCCACTACAACTTCAGGGAGATAAGACATGTATCTTC
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATA-GTAGCTTC
* * * * *
862480 AATCTGCCCCACTGCAACTTTAGGGGGATAAGACTAGTGGCTTA
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGA-TAGTAGCTTC
862524 AATCTGCT
1 AATCTGCT
862532 TCCCTACTAC
Statistics
Matches: 79, Mismatches: 15, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
43 1 0.01
44 77 0.97
45 1 0.01
ACGTcount: A:0.29, C:0.24, G:0.21, T:0.26
Consensus pattern (43 bp):
AATCTGCTCCACTGCAACTTCAGGGAGATAAGATAGTAGCTTC
Found at i:862793 original size:134 final size:134
Alignment explanation
Indices: 862617--862966 Score: 470
Period size: 134 Copynumber: 2.6 Consensus size: 134
862607 TTTGATCTGG
* * * *
862617 TTCGCTGCCAGTACAGGAAGACAAGA-TCTGCTATCTTTGATCTACTTCGCTGCCGATATAGGAA
1 TTCGCTGCCAATAAAGGAAGACAAGACT-TGCTATCTTTGATCTACTTCGCTGCCAATACAGGAA
** * *
862681 GACAATATCTACAATCTTCGACCTACTCCACTGTTCCTCAGGGAGACAAGATCTACTACCTTCAT
65 GACAATATCTACAATCTTCGACCTACTCCACTACTCCTCAGGGAGACAAGATCCACTACCTTCAG
862746 TCTAC
130 TCTAC
* *
862751 TTCGCTACCAATAAAGGAAGACAAGACTTGCTATCTTCGATCTACTTCGCTGCCAATACAGGAAG
1 TTCGCTGCCAATAAAGGAAGACAAGACTTGCTATCTTTGATCTACTTCGCTGCCAATACAGGAAG
* * * ** *
862816 ACAAGATCTACAATCTTCGACCTACTCCACTACTGCTCAGTGAGACAAGATCCGTTATCTTCAGT
66 ACAATATCTACAATCTTCGACCTACTCCACTACTCCTCAGGGAGACAAGATCCACTACCTTCAGT
862881 CTAC
131 CTAC
* * * * *
862885 TTCACTGCCAATATAGAAAGATAAGACTTGCTAAT-TTTAATCTACTTCGCTGCCAATACAGGAA
1 TTCGCTGCCAATAAAGGAAGACAAGACTTGCT-ATCTTTGATCTACTTCGCTGCCAATACAGGAA
*
862949 GACAATATCTACTATCTT
65 GACAATATCTACAATCTT
862967 TGATCCACTT
Statistics
Matches: 189, Mismatches: 25, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
134 186 0.98
135 3 0.02
ACGTcount: A:0.31, C:0.26, G:0.15, T:0.28
Consensus pattern (134 bp):
TTCGCTGCCAATAAAGGAAGACAAGACTTGCTATCTTTGATCTACTTCGCTGCCAATACAGGAAG
ACAATATCTACAATCTTCGACCTACTCCACTACTCCTCAGGGAGACAAGATCCACTACCTTCAGT
CTAC
Found at i:862966 original size:179 final size:178
Alignment explanation
Indices: 862740--863313 Score: 620
Period size: 179 Copynumber: 3.2 Consensus size: 178
862730 GATCTACTAC
* * * *
862740 CTTCATTCTACTTCGCTACCAATAAAGGAAGACAAGACTTGCTATCTTCGATCTACTTCGCTGCC
1 CTTCAATCTACTTCGCTGCCAATACAGGAAGACAAGACTTACTATCTTCGATCTACTTCGCTGCC
* *
862805 AATACAGGAAGACAAGATCTACAATCTTCGACCTACTCCACTACTGCTCAGTGAGACAAGATCCG
66 AATACAGGAAGACAAGATCTACAATCTTCGACCTACTCCACTGCTGCTCAG-GAGACAAGATCTG
* * * *
862870 TTATCTTCAGTCTACTTCACTGCCAATATAGAAAGATAAGACTTGCTAAT
130 CTATCTTCAGTCTACTTCACTGCCAATACAGGAAGACAAGACTTGCT-AT
* * * * *
862920 -TTTAATCTACTTCGCTGCCAATACAGGAAGACAATA-TCTACTATCTTTGATCCACTTCGCTAC
1 CTTCAATCTACTTCGCTGCCAATACAGGAAGACAAGACT-TACTATCTTCGATCTACTTCGCTGC
* * * * * *** * *
862983 CAATACAGGAAGACAAGATTTGCTATCTTCGACCTACTTCGCTGCCAATATAGGAAGACAGGATC
65 CAATACAGGAAGACAAGATCTACAATCTTCGACCTACTCCACTGCTGCT-CAGG-AGACAAGATC
* * * * **** * *
863048 TACAATCTTC-GACCTACTCCACTGTTGCT-CAGGGAGACAATA-TCTGCTAT
128 TGCTATCTTCAG-TCTACTTCACTGCCAATACAGGAAGACAAGACT-TGCTAT
* * *
863098 CTTCAGTCTACTTCGCTGCCAATACAGGAAGACAAGACTTGCTA-CTGTTGATCTACTTCGCTGC
1 CTTCAATCTACTTCGCTGCCAATACAGGAAGACAAGACTTACTATCT-TCGATCTACTTCGCTGC
* * * *
863162 CAATATAGGAAGACAAGATCTACAATCTTCGACCTACTCCATTGTTGCTCAAGAAGACAAGATCT
65 CAATACAGGAAGACAAGATCTACAATCTTCGACCTACTCCACTGCTGCTC-AGGAGACAAGATCT
**
863227 GCTATCTTCAGTCTACTTTGCTGCCAATACAGGAAGACAAGACTTGCTAT
129 GCTATCTTCAGTCTACTTCACTGCCAATACAGGAAGACAAGACTTGCTAT
*
863277 CTTCAATCTACTTTGCTGCCAATACAGGAAGACAAGA
1 CTTCAATCTACTTCGCTGCCAATACAGGAAGACAAGA
863314 TCTAAAATCT
Statistics
Matches: 313, Mismatches: 69, Indels: 25
0.77 0.17 0.06
Matches are distributed among these distances:
178 32 0.10
179 251 0.80
180 30 0.10
ACGTcount: A:0.31, C:0.26, G:0.16, T:0.28
Consensus pattern (178 bp):
CTTCAATCTACTTCGCTGCCAATACAGGAAGACAAGACTTACTATCTTCGATCTACTTCGCTGCC
AATACAGGAAGACAAGATCTACAATCTTCGACCTACTCCACTGCTGCTCAGGAGACAAGATCTGC
TATCTTCAGTCTACTTCACTGCCAATACAGGAAGACAAGACTTGCTAT
Found at i:863086 original size:134 final size:134
Alignment explanation
Indices: 862943--863377 Score: 658
Period size: 134 Copynumber: 3.2 Consensus size: 134
862933 GCTGCCAATA
* * * * * *
862943 CAGGAAGACAATATCTACTATCTT-TGATCCACTTCGCTACCAATACAGGAAGACAAGATTTGCT
1 CAGGAAGACAAGATCTGCTATCTTCAG-TCTACTTCGCTGCCAATACAGGAAGACAAGACTTGCT
* *
863007 ATCTTCGACCTACTTCGCTGCCAATATAGGAAGACAGGATCTACAATCTTCGACCTACTCCACTG
65 ATCTTCGATCTACTTCGCTGCCAATATAGGAAGACAAGATCTACAATCTTCGACCTACTCCACTG
863072 TTGCT
130 TTGCT
* *
863077 CAGGGAGACAATATCTGCTATCTTCAGTCTACTTCGCTGCCAATACAGGAAGACAAGACTTGCTA
1 CAGGAAGACAAGATCTGCTATCTTCAGTCTACTTCGCTGCCAATACAGGAAGACAAGACTTGCTA
* *
863142 -CTGTTGATCTACTTCGCTGCCAATATAGGAAGACAAGATCTACAATCTTCGACCTACTCCATTG
66 TCT-TCGATCTACTTCGCTGCCAATATAGGAAGACAAGATCTACAATCTTCGACCTACTCCACTG
863206 TTGCT
130 TTGCT
* *
863211 CAAGAAGACAAGATCTGCTATCTTCAGTCTACTTTGCTGCCAATACAGGAAGACAAGACTTGCTA
1 CAGGAAGACAAGATCTGCTATCTTCAGTCTACTTCGCTGCCAATACAGGAAGACAAGACTTGCTA
* * * * *
863276 TCTTCAATCTACTTTGCTGCCAATACAGGAAGACAAGATCTAAAATCTTCGACCTACTCCACTAT
66 TCTTCGATCTACTTCGCTGCCAATATAGGAAGACAAGATCTACAATCTTCGACCTACTCCACTGT
863341 TGCT
131 TGCT
*
863345 CAGGGAGACAAGATCTGCTATCTTCAGTCTACT
1 CAGGAAGACAAGATCTGCTATCTTCAGTCTACT
863378 CCACTGTAAA
Statistics
Matches: 275, Mismatches: 23, Indels: 6
0.90 0.08 0.02
Matches are distributed among these distances:
133 2 0.01
134 270 0.98
135 3 0.01
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.28
Consensus pattern (134 bp):
CAGGAAGACAAGATCTGCTATCTTCAGTCTACTTCGCTGCCAATACAGGAAGACAAGACTTGCTA
TCTTCGATCTACTTCGCTGCCAATATAGGAAGACAAGATCTACAATCTTCGACCTACTCCACTGT
TGCT
Found at i:863121 original size:224 final size:224
Alignment explanation
Indices: 862749--863190 Score: 695
Period size: 224 Copynumber: 2.0 Consensus size: 224
862739 CCTTCATTCT
*
862749 ACTTCGCTACCAATAAAGGAAGACAAGACTTGCTATCTTCGATCTACTTCGCTGCCAATACAGGA
1 ACTTCGCTACCAATAAAGGAAGACAAGACTTGCTATCTTCGACCTACTTCGCTGCCAATACAGGA
* *
862814 AGACAAGATCTACAATCTTCGACCTACTCCACTACTGCTCAGTGAGACAAGATCCGTTATCTTCA
66 AGACAAGATCTACAATCTTCGACCTACTCCACTACTGCTCAGGGAGACAAGATCCGCTATCTTCA
* * *
862879 GTCTACTTCACTGCCAATATAGAAAGATAAGACTTGCTAATTTTAATCTACTTCGCTGCCAATAC
131 GTCTACTTCACTGCCAATACAGAAAGACAAGACTTGCTAATGTTAATCTACTTCGCTGCCAATAC
* *
862944 AGGAAGACAATATCTACTATCTTTGATCC
196 AGGAAGACAAGATCTACAATCTTTGATCC
* * *
862973 ACTTCGCTACCAATACAGGAAGACAAGATTTGCTATCTTCGACCTACTTCGCTGCCAATATAGGA
1 ACTTCGCTACCAATAAAGGAAGACAAGACTTGCTATCTTCGACCTACTTCGCTGCCAATACAGGA
* ** * *
863038 AGACAGGATCTACAATCTTCGACCTACTCCACTGTTGCTCAGGGAGACAATATCTGCTATCTTCA
66 AGACAAGATCTACAATCTTCGACCTACTCCACTACTGCTCAGGGAGACAAGATCCGCTATCTTCA
* * * * *
863103 GTCTACTTCGCTGCCAATACAGGAAGACAAGACTTGCTACTGTTGATCTACTTCGCTGCCAATAT
131 GTCTACTTCACTGCCAATACAGAAAGACAAGACTTGCTAATGTTAATCTACTTCGCTGCCAATAC
863168 AGGAAGACAAGATCTACAATCTT
196 AGGAAGACAAGATCTACAATCTT
863191 CGACCTACTC
Statistics
Matches: 197, Mismatches: 21, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
224 197 1.00
ACGTcount: A:0.31, C:0.26, G:0.16, T:0.28
Consensus pattern (224 bp):
ACTTCGCTACCAATAAAGGAAGACAAGACTTGCTATCTTCGACCTACTTCGCTGCCAATACAGGA
AGACAAGATCTACAATCTTCGACCTACTCCACTACTGCTCAGGGAGACAAGATCCGCTATCTTCA
GTCTACTTCACTGCCAATACAGAAAGACAAGACTTGCTAATGTTAATCTACTTCGCTGCCAATAC
AGGAAGACAAGATCTACAATCTTTGATCC
Found at i:863154 original size:89 final size:88
Alignment explanation
Indices: 862630--863369 Score: 331
Period size: 89 Copynumber: 8.3 Consensus size: 88
862620 GCTGCCAGTA
* * * * *
862630 CAGGAAGACAAGATCTGCTATCTTTGATCTACTTCGCTGCCGATATAGGAAGACAATATCTACAA
1 CAGGAAGACAAGATCTGCTATCTTCGACCTACTTCGCTGCCAATACAGGAAGACAAGATCTAC-A
*
862695 TCTTCGACCTACTCCACTGTTCCT
65 TCTTCGACCTACTCCACTGTTGCT
* * * * * * *
862719 CAGGGAGACAAGATCTACTACCTTC-ATTCTACTTCGCTACCAATAAAGGAAGACAAGA-CTTGC
1 CAGGAAGACAAGATCTGCTATCTTCGA-CCTACTTCGCTGCCAATACAGGAAGACAAGATC-TAC
* * * ****
862782 TATCTTCGATCTACTTCGCTGCCAAT
64 -ATCTTCGACCTACTCCACTGTTGCT
* * * * * ***
862808 ACAGGAAGACAAGATCTACAATCTTCGACCTACTCCACTACTGCT-CAGTG-AGACAAGATCCGT
1 -CAGGAAGACAAGATCTGCTATCTTCGACCTACTTCGCTGCCAATACAG-GAAGACAAGAT-C-T
* * * ****
862871 -TATCTTC-AGTCTACTTCACTGCCAAT
62 ACATCTTCGA-CCTACTCCACTGTTGCT
* * * ** * *
862897 ATAGAAAGATAAGA-CTTGCTAAT-TTTAATCTACTTCGCTGCCAATACAGGAAGACAATATCTA
1 -CAGGAAGACAAGATC-TGCT-ATCTTCGACCTACTTCGCTGCCAATACAGGAAGACAAGATCTA
* * * *****
862960 CTATCTTTGATCC-ACTTCGCTACCAAT
63 C-ATCTTCGA-CCTACTCCACTGTTGCT
* * *
862987 ACAGGAAGACAAGATTTGCTATCTTCGACCTACTTCGCTGCCAATATAGGAAGACAGGATCTACA
1 -CAGGAAGACAAGATCTGCTATCTTCGACCTACTTCGCTGCCAATACAGGAAGACAAGATCTAC-
863052 ATCTTCGACCTACTCCACTGTTGCT
64 ATCTTCGACCTACTCCACTGTTGCT
* * *
863077 CAGGGAGACAATATCTGCTATCTTC-AGTCTACTTCGCTGCCAATACAGGAAGACAAGACTTGCT
1 CAGGAAGACAAGATCTGCTATCTTCGA-CCTACTTCGCTGCCAATACAGGAAGACAAGA--T-CT
* * * * ****
863141 AC-TGTT-GATCTACTTCGCTGCCAAT
62 ACATCTTCGACCTACTCCACTGTTGCT
* * * * ** **** * *
863166 ATAGGAAGACAAGATCTACAATCTTCGACCTACTCCATTGTTGCT-CAAGAAGACAAGATCTGCT
1 -CAGGAAGACAAGATCTGCTATCTTCGACCTACTTCGCTGCCAATACAGGAAGACAAGATCTAC-
* *** ****
863230 ATCTTC-AGTCTACTTTGCTGCCAAT
64 ATCTTCGA-CCTACTCCACTGTTGCT
* * *
863255 ACAGGAAGACAAGA-CTTGCTATCTTCAATCTACTTTGCTGCCAATACAGGAAGACAAGATCTAA
1 -CAGGAAGACAAGATC-TGCTATCTTCGACCTACTTCGCTGCCAATACAGGAAGACAAGATCT-A
* *
863319 AATCTTCGACCTACTCCACTATTGCT
63 CATCTTCGACCTACTCCACTGTTGCT
*
863345 CAGGGAGACAAGATCTGCTATCTTC
1 CAGGAAGACAAGATCTGCTATCTTC
863370 AGTCTACTCC
Statistics
Matches: 491, Mismatches: 127, Indels: 66
0.72 0.19 0.10
Matches are distributed among these distances:
86 3 0.01
87 1 0.00
88 11 0.02
89 274 0.56
90 190 0.39
91 8 0.02
92 4 0.01
ACGTcount: A:0.30, C:0.26, G:0.16, T:0.28
Consensus pattern (88 bp):
CAGGAAGACAAGATCTGCTATCTTCGACCTACTTCGCTGCCAATACAGGAAGACAAGATCTACAT
CTTCGACCTACTCCACTGTTGCT
Found at i:863271 original size:358 final size:358
Alignment explanation
Indices: 862617--863317 Score: 1075
Period size: 358 Copynumber: 2.0 Consensus size: 358
862607 TTTGATCTGG
* * * * *
862617 TTCGCTGCCAGTACAGGAAGACAAGATCTGCTATCTTTGATCTACTTCGCTGCCGATATAGGAAG
1 TTCGCTACCAATACAGGAAGACAAGATCTGCTATCTTCGACCTACTTCGCTGCCAATATAGGAAG
* *
862682 ACAATATCTACAATCTTCGACCTACTCCACTGTTCCTCAGGGAGACAAGATCTACTACCTTCATT
66 ACAAGATCTACAATCTTCGACCTACTCCACTGTTCCTCAGGGAGACAAGATCTACTACCTTCAGT
862747 CTACTTCGCTACCAATAAAGGAAGACAAGACTTGCTATCTTCGATCTACTTCGCTGCCAATACAG
131 CTACTTCGCTACCAATAAAGGAAGACAAGACTTGCTATCTTCGATCTACTTCGCTGCCAATACAG
* *
862812 GAAGACAAGATCTACAATCTTCGACCTACTCCACTACTGCTCAGTGAGACAAGATCCGTTATCTT
196 GAAGACAAGATCTACAATCTTCGACCTACTCCACTACTGCTCAGTAAGACAAGATCCGCTATCTT
* * *
862877 CAGTCTACTTCACTGCCAATATAGAAAGATAAGACTTGCTAAT-TTTAATCTACTTCGCTGCCAA
261 CAGTCTACTTCACTGCCAATACAGAAAGACAAGACTTGCT-ATCTTCAATCTACTTCGCTGCCAA
*
862941 TACAGGAAGACAATATCTACTATCTTTGATCCAC
325 TACAGGAAGACAAGATCTACTATCTTTGATCCAC
*
862975 TTCGCTACCAATACAGGAAGACAAGATTTGCTATCTTCGACCTACTTCGCTGCCAATATAGGAAG
1 TTCGCTACCAATACAGGAAGACAAGATCTGCTATCTTCGACCTACTTCGCTGCCAATATAGGAAG
* * * * *
863040 ACAGGATCTACAATCTTCGACCTACTCCACTGTTGCTCAGGGAGACAATATCTGCTATCTTCAGT
66 ACAAGATCTACAATCTTCGACCTACTCCACTGTTCCTCAGGGAGACAAGATCTACTACCTTCAGT
* * * *
863105 CTACTTCGCTGCCAATACAGGAAGACAAGACTTGCTA-CTGTTGATCTACTTCGCTGCCAATATA
131 CTACTTCGCTACCAATAAAGGAAGACAAGACTTGCTATCT-TCGATCTACTTCGCTGCCAATACA
* ** *
863169 GGAAGACAAGATCTACAATCTTCGACCTACTCCATTGTTGCTCAAG-AAGACAAGATCTGCTATC
195 GGAAGACAAGATCTACAATCTTCGACCTACTCCACTACTGCTC-AGTAAGACAAGATCCGCTATC
** * *
863233 TTCAGTCTACTTTGCTGCCAATACAGGAAGACAAGACTTGCTATCTTCAATCTACTTTGCTGCCA
259 TTCAGTCTACTTCACTGCCAATACAGAAAGACAAGACTTGCTATCTTCAATCTACTTCGCTGCCA
863298 ATACAGGAAGACAAGATCTA
324 ATACAGGAAGACAAGATCTA
863318 AAATCTTCGA
Statistics
Matches: 309, Mismatches: 31, Indels: 6
0.89 0.09 0.02
Matches are distributed among these distances:
357 4 0.01
358 303 0.98
359 2 0.01
ACGTcount: A:0.30, C:0.26, G:0.16, T:0.28
Consensus pattern (358 bp):
TTCGCTACCAATACAGGAAGACAAGATCTGCTATCTTCGACCTACTTCGCTGCCAATATAGGAAG
ACAAGATCTACAATCTTCGACCTACTCCACTGTTCCTCAGGGAGACAAGATCTACTACCTTCAGT
CTACTTCGCTACCAATAAAGGAAGACAAGACTTGCTATCTTCGATCTACTTCGCTGCCAATACAG
GAAGACAAGATCTACAATCTTCGACCTACTCCACTACTGCTCAGTAAGACAAGATCCGCTATCTT
CAGTCTACTTCACTGCCAATACAGAAAGACAAGACTTGCTATCTTCAATCTACTTCGCTGCCAAT
ACAGGAAGACAAGATCTACTATCTTTGATCCAC
Found at i:863324 original size:45 final size:45
Alignment explanation
Indices: 862617--863333 Score: 532
Period size: 45 Copynumber: 16.0 Consensus size: 45
862607 TTTGATCTGG
* * *
862617 TTCGCTGCCAGTACAGGAAGACAAGATCTGCTATCTTTGATCTAC
1 TTCGCTGCCAATACAGGAAGACAAGATCTACTATCTTCGATCTAC
* * * * *
862662 TTCGCTGCCGATATAGGAAGACAATATCTACAATCTTCGACCTAC
1 TTCGCTGCCAATACAGGAAGACAAGATCTACTATCTTCGATCTAC
* * * *
862707 TCCACTGTTCC--T-CAGGGAGACAAGATCTACTACCTTC-ATTCTAC
1 TTCGCTG--CCAATACAGGAAGACAAGATCTACTATCTTCGA-TCTAC
* * *
862751 TTCGCTACCAATAAAGGAAGACAAGA-CTTGCTATCTTCGATCTAC
1 TTCGCTGCCAATACAGGAAGACAAGATC-TACTATCTTCGATCTAC
* *
862796 TTCGCTGCCAATACAGGAAGACAAGATCTACAATCTTCGACCTAC
1 TTCGCTGCCAATACAGGAAGACAAGATCTACTATCTTCGATCTAC
* * * *** ***
862841 TCCACTACTGCT-CAGTG-AGACAAGATCCGTTATCTTC-AGTCTAC
1 TTCGCTGCCAATACAG-GAAGACAAGATCTACTATCTTCGA-TCTAC
* * * * * **
862885 TTCACTGCCAATATAGAAAGATAAGA-CTTGCTAAT-TTTAATCTAC
1 TTCGCTGCCAATACAGGAAGACAAGATC-TACT-ATCTTCGATCTAC
* * *
862930 TTCGCTGCCAATACAGGAAGACAATATCTACTATCTTTGATCCAC
1 TTCGCTGCCAATACAGGAAGACAAGATCTACTATCTTCGATCTAC
* * * *
862975 TTCGCTACCAATACAGGAAGACAAGATTTGCTATCTTCGACCTAC
1 TTCGCTGCCAATACAGGAAGACAAGATCTACTATCTTCGATCTAC
* * * *
863020 TTCGCTGCCAATATAGGAAGACAGGATCTACAATCTTCGACCTAC
1 TTCGCTGCCAATACAGGAAGACAAGATCTACTATCTTCGATCTAC
* * **** * * *
863065 TCCACTGTTGCT-CAGGGAGACAATATCTGCTATCTTC-AGTCTAC
1 TTCGCTGCCAATACAGGAAGACAAGATCTACTATCTTCGA-TCTAC
* *
863109 TTCGCTGCCAATACAGGAAGACAAGA-CTTGCTA-CTGTTGATCTAC
1 TTCGCTGCCAATACAGGAAGACAAGATC-TACTATCT-TCGATCTAC
* * *
863154 TTCGCTGCCAATATAGGAAGACAAGATCTACAATCTTCGACCTAC
1 TTCGCTGCCAATACAGGAAGACAAGATCTACTATCTTCGATCTAC
* ** **** * *
863199 TCCATTGTTGCT-CAAGAAGACAAGATCTGCTATCTTC-AGTCTAC
1 TTCGCTGCCAATACAGGAAGACAAGATCTACTATCTTCGA-TCTAC
* * *
863243 TTTGCTGCCAATACAGGAAGACAAGA-CTTGCTATCTTCAATCTAC
1 TTCGCTGCCAATACAGGAAGACAAGATC-TACTATCTTCGATCTAC
* ** *
863288 TTTGCTGCCAATACAGGAAGACAAGATCTAAAATCTTCGACCTAC
1 TTCGCTGCCAATACAGGAAGACAAGATCTACTATCTTCGATCTAC
863333 T
1 T
863334 CCACTATTGC
Statistics
Matches: 518, Mismatches: 124, Indels: 60
0.74 0.18 0.09
Matches are distributed among these distances:
42 2 0.00
43 4 0.01
44 125 0.24
45 373 0.72
46 12 0.02
47 2 0.00
ACGTcount: A:0.30, C:0.26, G:0.16, T:0.28
Consensus pattern (45 bp):
TTCGCTGCCAATACAGGAAGACAAGATCTACTATCTTCGATCTAC
Found at i:864026 original size:45 final size:46
Alignment explanation
Indices: 863954--864041 Score: 106
Period size: 45 Copynumber: 1.9 Consensus size: 46
863944 AAGCTGAAGT
* * *
863954 GAATGAATCAATCAAGATAGCAAATTTTG-CTAGAATACAAAATGA
1 GAATAAATCAATCAAGATAGCAAATTTTGTCAAAAATACAAAATGA
* * **
863999 GAATAAATTAATCAAGATGGCGTATTTTGTCAAAAATACAAAA
1 GAATAAATCAATCAAGATAGCAAATTTTGTCAAAAATACAAAA
864042 AATGAATAAA
Statistics
Matches: 35, Mismatches: 7, Indels: 1
0.81 0.16 0.02
Matches are distributed among these distances:
45 24 0.69
46 11 0.31
ACGTcount: A:0.49, C:0.10, G:0.15, T:0.26
Consensus pattern (46 bp):
GAATAAATCAATCAAGATAGCAAATTTTGTCAAAAATACAAAATGA
Found at i:864361 original size:24 final size:24
Alignment explanation
Indices: 864325--864381 Score: 75
Period size: 24 Copynumber: 2.4 Consensus size: 24
864315 GCCTCTCCTT
864325 TTTCTTTTT-CTTTTTTCGGTTTTC-
1 TTTCTTTTTCCTTTTTTC--TTTTCG
864349 TTT-TTTTTCCTTTTTTCTTTTCG
1 TTTCTTTTTCCTTTTTTCTTTTCG
864372 TTTCTTTTTC
1 TTTCTTTTTC
864382 AAGTGAAGTA
Statistics
Matches: 30, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
22 5 0.17
23 8 0.27
24 17 0.57
ACGTcount: A:0.00, C:0.18, G:0.05, T:0.77
Consensus pattern (24 bp):
TTTCTTTTTCCTTTTTTCTTTTCG
Found at i:868870 original size:3 final size:3
Alignment explanation
Indices: 868849--869043 Score: 64
Period size: 3 Copynumber: 66.0 Consensus size: 3
868839 TAGTTGAAAG
* * * *
868849 ATA ATA A-A ATG ATA GTA ATA ATA AT- ACA ATG ATA ATA ATA A-A A-A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* ** * *
868893 ATA ATA ATA CATTA TTA A-A CGA ATA ATA GTA GTAA ATAA ATAA ATA
1 ATA ATA ATA -A-TA ATA ATA ATA ATA ATA ATA AT-A AT-A AT-A ATA
* * * * * * * * * *
868939 AGA GTA GTA ATA GTA ATA ATA ATG GTA GTA A-A ATA AAA ACA A-A AAA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * * * **
868985 ATA GTA ATA GTA ATA ATA GTA ATA ATA GTA ACG A-A ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
869032 ATA ATA ATA ATA
1 ATA ATA ATA ATA
869044 GGAATAAAGT
Statistics
Matches: 143, Mismatches: 39, Indels: 20
0.71 0.19 0.10
Matches are distributed among these distances:
2 13 0.09
3 117 0.82
4 11 0.08
5 2 0.01
ACGTcount: A:0.61, C:0.03, G:0.09, T:0.28
Consensus pattern (3 bp):
ATA
Found at i:868871 original size:17 final size:17
Alignment explanation
Indices: 868849--868901 Score: 54
Period size: 16 Copynumber: 3.0 Consensus size: 17
868839 TAGTTGAAAG
868849 ATAATAAAATGATAGTAATA
1 ATAATAAAATG--A-TAATA
*
868869 ATAATACAATGATAATA
1 ATAATAAAATGATAATA
*
868886 ATAA-AAAATAATAATA
1 ATAATAAAATGATAATA
868902 CATTATTAAA
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
16 10 0.33
17 9 0.30
18 1 0.03
20 10 0.33
ACGTcount: A:0.64, C:0.02, G:0.06, T:0.28
Consensus pattern (17 bp):
ATAATAAAATGATAATA
Found at i:868874 original size:20 final size:20
Alignment explanation
Indices: 868849--868889 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
868839 TAGTTGAAAG
*
868849 ATAATAAAATGATAGTAATA
1 ATAATAAAATGATAATAATA
*
868869 ATAATACAATGATAATAATA
1 ATAATAAAATGATAATAATA
868889 A
1 A
868890 AAAATAATAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.61, C:0.02, G:0.07, T:0.29
Consensus pattern (20 bp):
ATAATAAAATGATAATAATA
Found at i:868973 original size:43 final size:42
Alignment explanation
Indices: 868914--869002 Score: 117
Period size: 43 Copynumber: 2.1 Consensus size: 42
868904 TTATTAAACG
* * *
868914 AATAATAGTAGTAAATAAATAA-ATAAGAGTAGTAATAGTAAT
1 AATAATAGTAGTAAATAAA-AACAAAAAAATAGTAATAGTAAT
*
868956 AATAATGGTAGTAAAATAAAAACAAAAAAATAGTAATAGTAAT
1 AATAATAGTAGT-AAATAAAAACAAAAAAATAGTAATAGTAAT
868999 AATA
1 AATA
869003 GTAATAATAG
Statistics
Matches: 41, Mismatches: 4, Indels: 3
0.85 0.08 0.06
Matches are distributed among these distances:
42 13 0.32
43 28 0.68
ACGTcount: A:0.61, C:0.01, G:0.12, T:0.26
Consensus pattern (42 bp):
AATAATAGTAGTAAATAAAAACAAAAAAATAGTAATAGTAAT
Found at i:872830 original size:16 final size:16
Alignment explanation
Indices: 872809--872842 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
872799 AGCAAACACT
872809 TAGTTTATTCTAGCAA
1 TAGTTTATTCTAGCAA
872825 TAGTTTATTCTAGCAA
1 TAGTTTATTCTAGCAA
872841 TA
1 TA
872843 AAGTAGATGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.32, C:0.12, G:0.12, T:0.44
Consensus pattern (16 bp):
TAGTTTATTCTAGCAA
Found at i:872887 original size:10 final size:10
Alignment explanation
Indices: 872872--872896 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
872862 AAATTGAAAT
872872 GAGCTCAAAC
1 GAGCTCAAAC
872882 GAGCTCAAAC
1 GAGCTCAAAC
872892 GAGCT
1 GAGCT
872897 GATTTGAGCT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.36, C:0.28, G:0.24, T:0.12
Consensus pattern (10 bp):
GAGCTCAAAC
Found at i:874305 original size:25 final size:25
Alignment explanation
Indices: 874274--874342 Score: 75
Period size: 25 Copynumber: 2.8 Consensus size: 25
874264 GCTATAAATG
874274 GTAAGCTCCTCCGAGCTGAATAACA
1 GTAAGCTCCTCCGAGCTGAATAACA
* * * **
874299 GTAAGCTCCTCTGAACTAAATAATG
1 GTAAGCTCCTCCGAGCTGAATAACA
* *
874324 GTAAGCTCATACGAGCTGA
1 GTAAGCTCCTCCGAGCTGA
874343 GTATCGATAA
Statistics
Matches: 34, Mismatches: 10, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
25 34 1.00
ACGTcount: A:0.33, C:0.23, G:0.20, T:0.23
Consensus pattern (25 bp):
GTAAGCTCCTCCGAGCTGAATAACA
Found at i:874501 original size:20 final size:19
Alignment explanation
Indices: 874476--874513 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 19
874466 TGGCAACTAC
874476 TCAATTCACAAACATATAAT
1 TCAATTCA-AAACATATAAT
*
874496 TCAATTTAAAACATATAA
1 TCAATTCAAAACATATAA
874514 ATGTACAATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 10 0.59
20 7 0.41
ACGTcount: A:0.53, C:0.16, G:0.00, T:0.32
Consensus pattern (19 bp):
TCAATTCAAAACATATAAT
Found at i:877332 original size:28 final size:28
Alignment explanation
Indices: 877246--877318 Score: 112
Period size: 28 Copynumber: 2.6 Consensus size: 28
877236 CGGGTGAAAT
*
877246 AGGATAGCTTC-AGCTATCAACTACAAAA
1 AGGATAGCTTCGA-CTATCGACTACAAAA
877274 AGGATAGCTTCGACTATCGACTACAAAA
1 AGGATAGCTTCGACTATCGACTACAAAA
*
877302 AGGATAGCTTCGGCTAT
1 AGGATAGCTTCGACTAT
877319 TGATTATGAA
Statistics
Matches: 42, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
28 41 0.98
29 1 0.02
ACGTcount: A:0.37, C:0.21, G:0.19, T:0.23
Consensus pattern (28 bp):
AGGATAGCTTCGACTATCGACTACAAAA
Found at i:877353 original size:29 final size:30
Alignment explanation
Indices: 877321--877514 Score: 99
Period size: 30 Copynumber: 6.5 Consensus size: 30
877311 TCGGCTATTG
877321 ATTATGAAAAGGGATGGAGACGACAATC-A
1 ATTATGAAAAGGGATGGAGACGACAATCAA
* ** * * *
877350 ATTATGGAAAGCAATGGTGACGACCATAAA
1 ATTATGAAAAGGGATGGAGACGACAATCAA
* *** * * *
877380 ATTATAAAAAAGGGATGGCTTCGGCTATC-G
1 ATTAT-GAAAAGGGATGGAGACGACAATCAA
* * *** * *
877410 ATCATGAAAAGGGCTGGCTTCGGCTATCAA
1 ATTATGAAAAGGGATGGAGACGACAATCAA
* * * *
877440 ATTATGAAAAGGGATTGTGACGACCATCGA
1 ATTATGAAAAGGGATGGAGACGACAATCAA
**
877470 ACAATGTAAAA-GGATGGTA-ACGACAATCAA
1 ATTATG-AAAAGGGATGG-AGACGACAATCAA
877500 ATTATGAAAAGGGAT
1 ATTATGAAAAGGGAT
877515 AGCTTCGGCT
Statistics
Matches: 121, Mismatches: 38, Indels: 11
0.71 0.22 0.06
Matches are distributed among these distances:
29 47 0.39
30 57 0.47
31 17 0.14
ACGTcount: A:0.40, C:0.13, G:0.25, T:0.22
Consensus pattern (30 bp):
ATTATGAAAAGGGATGGAGACGACAATCAA
Found at i:877438 original size:25 final size:27
Alignment explanation
Indices: 877387--877454 Score: 73
Period size: 29 Copynumber: 2.3 Consensus size: 27
877377 AAAATTATAA
877387 AAAAGGGATGGCTTCGGCTATCGATCATG
1 AAAAGGGATGGCTTCGGC-ATC-ATCATG
* *
877416 AAAAGGGCTGGCTTCGGCTATCAAATTATG
1 AAAAGGGATGGCTTCGGC-ATC--ATCATG
877446 AAAAGGGAT
1 AAAAGGGAT
877455 TGTGACGACC
Statistics
Matches: 34, Mismatches: 4, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
29 21 0.62
30 13 0.38
ACGTcount: A:0.32, C:0.15, G:0.29, T:0.24
Consensus pattern (27 bp):
AAAAGGGATGGCTTCGGCATCATCATG
Found at i:877449 original size:30 final size:30
Alignment explanation
Indices: 877378--877575 Score: 127
Period size: 30 Copynumber: 6.6 Consensus size: 30
877368 GACGACCATA
*
877378 AAATTATAAAAAAGGGATGGCTTCGGCTATC
1 AAATTAT-GAAAAGGGATGGCTTCGGCTATC
* * *
877409 -GATCATGAAAAGGGCTGGCTTCGGCTATC
1 AAATTATGAAAAGGGATGGCTTCGGCTATC
* * * *
877438 AAATTATGAAAAGGGATTG-TGACGACCATC
1 AAATTATGAAAAGGGATGGCT-TCGGCTATC
* ** * * *
877468 GAACAATGTAAAA-GGATGG-TAACGACAATC
1 AAATTATG-AAAAGGGATGGCT-TCGGCTATC
*
877498 AAATTATGAAAAGGGATAGCTTCGGCTATC
1 AAATTATGAAAAGGGATGGCTTCGGCTATC
* * *
877528 GAATTATGAAAAGGGATAGCCTT-GGCTATG
1 AAATTATGAAAAGGGAT-GGCTTCGGCTATC
* * *
877558 AAATAAAGAAAAAGGATG
1 AAATTATGAAAAGGGATG
877576 TGTCAACCAT
Statistics
Matches: 129, Mismatches: 32, Indels: 14
0.74 0.18 0.08
Matches are distributed among these distances:
29 27 0.21
30 94 0.73
31 8 0.06
ACGTcount: A:0.39, C:0.13, G:0.25, T:0.23
Consensus pattern (30 bp):
AAATTATGAAAAGGGATGGCTTCGGCTATC
Found at i:877529 original size:60 final size:58
Alignment explanation
Indices: 877363--877544 Score: 152
Period size: 60 Copynumber: 3.0 Consensus size: 58
877353 ATGGAAAGCA
* * * * *
877363 ATGGTGACGACCATAAAATTATAAAAAAGGGATGGCTTCGGCTATCGATCATGAAAAGGG
1 ATGGT-ACGACAATCAAATTAT-GAAAAGGGATAGCTTCGGCTATCGAACATGAAAAGGG
* * * * * * * *
877423 CTGGCTTCGGCTATCAAATTATGAAAAGGGATTG-TGACGACCATCGAACAATGTAAAA-GG
1 ATGG-TACGACAATCAAATTATGAAAAGGGATAGCT-TCGGCTATCGAAC-ATG-AAAAGGG
*
877483 ATGGTAACGACAATCAAATTATGAAAAGGGATAGCTTCGGCTATCGAATTATGAAAAGGG
1 ATGGT-ACGACAATCAAATTATGAAAAGGGATAGCTTCGGCTATCGAA-CATGAAAAGGG
877543 AT
1 AT
877545 AGCCTTGGCT
Statistics
Matches: 94, Mismatches: 20, Indels: 16
0.72 0.15 0.12
Matches are distributed among these distances:
58 1 0.01
59 24 0.26
60 63 0.67
61 6 0.06
ACGTcount: A:0.38, C:0.14, G:0.25, T:0.23
Consensus pattern (58 bp):
ATGGTACGACAATCAAATTATGAAAAGGGATAGCTTCGGCTATCGAACATGAAAAGGG
Found at i:883141 original size:35 final size:35
Alignment explanation
Indices: 883092--883347 Score: 296
Period size: 35 Copynumber: 7.3 Consensus size: 35
883082 AGTCTAACTA
* * * * *
883092 TAACACACCGATGCTTATAAGAGCTAACCCAACTG
1 TAACACGCCAATGCTCATAAGAGCTAATCCAACCG
* * *
883127 AAACACGCTAATGCTCATAAGAGTTAATCCAACCG
1 TAACACGCCAATGCTCATAAGAGCTAATCCAACCG
* ** * *
883162 TAACATGCCAAAACTCATAAGAGTTAATCCAATCG
1 TAACACGCCAATGCTCATAAGAGCTAATCCAACCG
*
883197 TAACACGGCAATGCTCATAAGAGCTAATCCAACCG
1 TAACACGCCAATGCTCATAAGAGCTAATCCAACCG
* * * *
883232 TAACATGCCAATGCTCATAAGAGCTAATTCGACCA
1 TAACACGCCAATGCTCATAAGAGCTAATCCAACCG
* *
883267 TAACACACCAATGCTCATAAGAGCTAATCTAACCG
1 TAACACGCCAATGCTCATAAGAGCTAATCCAACCG
* *
883302 TAACACGCCAATCCTCATAAGAGTTAATCCAACCG
1 TAACACGCCAATGCTCATAAGAGCTAATCCAACCG
* *
883337 AAACACACCAA
1 TAACACGCCAA
883348 ACAGGGAGTA
Statistics
Matches: 184, Mismatches: 37, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
35 184 1.00
ACGTcount: A:0.40, C:0.28, G:0.13, T:0.20
Consensus pattern (35 bp):
TAACACGCCAATGCTCATAAGAGCTAATCCAACCG
Found at i:890874 original size:35 final size:35
Alignment explanation
Indices: 890832--891039 Score: 163
Period size: 35 Copynumber: 5.9 Consensus size: 35
890822 CACACCGATG
* * *
890832 CTCATAAGATCTAACCCAATCGAAACACGCCAGTA
1 CTCATAAGAGCTAACCCAATCGTAACACGCCAATA
* * * * *
890867 CTTATAAGAGCAAACCCAACCGTAACATGCCAATG
1 CTCATAAGAGCTAACCCAATCGTAACACGCCAATA
* * *
890902 CTCATAAGAGCTAATCCAA-CTGTAACACGACAATT
1 CTCATAAGAGCTAACCCAATC-GTAACACGCCAATA
* * * * *
890937 CTCATAAGATCTAATCCAATTGTTACACGCCAATG
1 CTCATAAGAGCTAACCCAATCGTAACACGCCAATA
* * *
890972 CTCATATGAGCTAATCCAA-C-TATAGCACGCCAATG
1 CTCATAAGAGCTAACCCAATCGTA-A-CACGCCAATA
* *
891007 CTCATAAGAGCTAATCCAA-CAGAAACACGCCAA
1 CTCATAAGAGCTAACCCAATC-GTAACACGCCAA
891040 ACAAGGAGTA
Statistics
Matches: 142, Mismatches: 25, Indels: 12
0.79 0.14 0.07
Matches are distributed among these distances:
33 1 0.01
34 2 0.01
35 137 0.96
36 1 0.01
37 1 0.01
ACGTcount: A:0.39, C:0.28, G:0.12, T:0.20
Consensus pattern (35 bp):
CTCATAAGAGCTAACCCAATCGTAACACGCCAATA
Found at i:890929 original size:70 final size:70
Alignment explanation
Indices: 890819--891039 Score: 228
Period size: 70 Copynumber: 3.2 Consensus size: 70
890809 AGTCCAACTA
* * * * * * * * *
890819 TAACACACCGATGCTCATAAGATCTAACCCAA-TCGAAACACGCCAGTACTTATAAGAGCAAACC
1 TAACACGCCAATGCTCATAAGAGCTAATCCAACT-GTAACACGCCAATACTCATAAGAGCTAATC
890883 CAACCG
65 CAACCG
* * * *
890889 TAACATGCCAATGCTCATAAGAGCTAATCCAACTGTAACACGACAATTCTCATAAGATCTAATCC
1 TAACACGCCAATGCTCATAAGAGCTAATCCAACTGTAACACGCCAATACTCATAAGAGCTAATCC
**
890954 AATTG
66 AACCG
* * * * *
890959 TTACACGCCAATGCTCATATGAGCTAATCCAACTATAGCACGCCAATGCTCATAAGAGCTAATCC
1 TAACACGCCAATGCTCATAAGAGCTAATCCAACTGTAACACGCCAATACTCATAAGAGCTAATCC
*
891024 AACAG
66 AACCG
*
891029 AAACACGCCAA
1 TAACACGCCAA
891040 ACAAGGAGTA
Statistics
Matches: 123, Mismatches: 27, Indels: 2
0.81 0.18 0.01
Matches are distributed among these distances:
70 122 0.99
71 1 0.01
ACGTcount: A:0.39, C:0.29, G:0.13, T:0.20
Consensus pattern (70 bp):
TAACACGCCAATGCTCATAAGAGCTAATCCAACTGTAACACGCCAATACTCATAAGAGCTAATCC
AACCG
Found at i:891004 original size:105 final size:105
Alignment explanation
Indices: 890832--891035 Score: 264
Period size: 105 Copynumber: 1.9 Consensus size: 105
890822 CACACCGATG
* * * *
890832 CTCATAAGATCTAACCCAATCGAAACACGCCAGTACTTATAAGAGCAAACCCAACCGTAACATGC
1 CTCATAAGATCTAACCCAATCGAAACACGCCAATACTCATAAGAGCAAACCCAACCATAACACGC
* *
890897 CAATGCTCATAAGAGCTAATCCAACTGTAACACGACAATT
66 CAATGCTCATAAGAGCTAATCCAACAGAAACACGACAATT
* * ** * * * * * *
890937 CTCATAAGATCTAATCCAATTGTTACACGCCAATGCTCATATGAGCTAATCCAACTATAGCACGC
1 CTCATAAGATCTAACCCAATCGAAACACGCCAATACTCATAAGAGCAAACCCAACCATAACACGC
891002 CAATGCTCATAAGAGCTAATCCAACAGAAACACG
66 CAATGCTCATAAGAGCTAATCCAACAGAAACACG
891036 CCAAACAAGG
Statistics
Matches: 83, Mismatches: 16, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
105 83 1.00
ACGTcount: A:0.39, C:0.28, G:0.13, T:0.21
Consensus pattern (105 bp):
CTCATAAGATCTAACCCAATCGAAACACGCCAATACTCATAAGAGCAAACCCAACCATAACACGC
CAATGCTCATAAGAGCTAATCCAACAGAAACACGACAATT
Found at i:892139 original size:33 final size:33
Alignment explanation
Indices: 892102--892204 Score: 92
Period size: 33 Copynumber: 3.2 Consensus size: 33
892092 TCAACTATTA
892102 ACTAATCAATTTGATCTCCTAATTGTAATAATT
1 ACTAATCAATTTGATCTCCTAATTGTAATAATT
* * **
892135 ACTAAT--TTTTG-TACT--TTATCCTCAACT-ATT
1 ACTAATCAATTTGAT-CTCCTAATTGT-AA-TAATT
892165 AACTAATCAATTTGATCTCCTAATTGTAATAATT
1 -ACTAATCAATTTGATCTCCTAATTGTAATAATT
892199 ACTAAT
1 ACTAAT
892205 TTGTGTACTT
Statistics
Matches: 52, Mismatches: 8, Indels: 20
0.65 0.10 0.25
Matches are distributed among these distances:
29 4 0.08
30 6 0.12
31 13 0.25
33 19 0.37
34 6 0.12
35 4 0.08
ACGTcount: A:0.35, C:0.17, G:0.05, T:0.44
Consensus pattern (33 bp):
ACTAATCAATTTGATCTCCTAATTGTAATAATT
Found at i:892141 original size:29 final size:29
Alignment explanation
Indices: 892109--892207 Score: 71
Period size: 29 Copynumber: 3.2 Consensus size: 29
892099 TTAACTAATC
892109 AATTTGATCTCCTAATTGTAATAATTACT
1 AATTTGATCTCCTAATTGTAATAATTACT
*
892138 AATTTTTGTACTTTATCCTCAACTAT-TAACTAA-T-C-
1 AA--TTTG-A---TCTCCT-AA-T-TGTAA-TAATTACT
892173 AATTTGATCTCCTAATTGTAATAATTACT
1 AATTTGATCTCCTAATTGTAATAATTACT
892202 AATTTG
1 AATTTG
892208 TGTACTTTCT
Statistics
Matches: 54, Mismatches: 2, Indels: 28
0.64 0.02 0.33
Matches are distributed among these distances:
26 4 0.07
27 5 0.09
28 3 0.06
29 13 0.24
31 4 0.07
32 2 0.04
33 4 0.07
35 7 0.13
36 3 0.06
37 5 0.09
38 4 0.07
ACGTcount: A:0.33, C:0.15, G:0.06, T:0.45
Consensus pattern (29 bp):
AATTTGATCTCCTAATTGTAATAATTACT
Found at i:892156 original size:64 final size:64
Alignment explanation
Indices: 892088--892215 Score: 247
Period size: 64 Copynumber: 2.0 Consensus size: 64
892078 ACTTAAGTCC
*
892088 ATCCTCAACTATTAACTAATCAATTTGATCTCCTAATTGTAATAATTACTAATTTTTGTACTTT
1 ATCCTCAACTATTAACTAATCAATTTGATCTCCTAATTGTAATAATTACTAATTTGTGTACTTT
892152 ATCCTCAACTATTAACTAATCAATTTGATCTCCTAATTGTAATAATTACTAATTTGTGTACTTT
1 ATCCTCAACTATTAACTAATCAATTTGATCTCCTAATTGTAATAATTACTAATTTGTGTACTTT
892216 CTTTTTACAA
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
64 63 1.00
ACGTcount: A:0.33, C:0.17, G:0.05, T:0.45
Consensus pattern (64 bp):
ATCCTCAACTATTAACTAATCAATTTGATCTCCTAATTGTAATAATTACTAATTTGTGTACTTT
Found at i:893369 original size:20 final size:16
Alignment explanation
Indices: 893323--893360 Score: 67
Period size: 16 Copynumber: 2.4 Consensus size: 16
893313 GTTAGTGAAT
*
893323 ATAAAATGTTGAATCG
1 ATAACATGTTGAATCG
893339 ATAACATGTTGAATCG
1 ATAACATGTTGAATCG
893355 ATAACA
1 ATAACA
893361 ATTATGTTGT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.45, C:0.11, G:0.16, T:0.29
Consensus pattern (16 bp):
ATAACATGTTGAATCG
Found at i:902465 original size:13 final size:13
Alignment explanation
Indices: 902447--902484 Score: 51
Period size: 13 Copynumber: 2.9 Consensus size: 13
902437 AAAAAATGAT
902447 TTATTTATATATA
1 TTATTTATATATA
*
902460 TTATTTAGATA-A
1 TTATTTATATATA
902472 TTATTTGATATAT
1 TTATTT-ATATAT
902485 TAACTGTGGA
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
12 7 0.33
13 14 0.67
ACGTcount: A:0.37, C:0.00, G:0.05, T:0.58
Consensus pattern (13 bp):
TTATTTATATATA
Found at i:908870 original size:26 final size:26
Alignment explanation
Indices: 908840--908889 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
908830 TTTATCTTGA
908840 ATTATACT-TTCATTATAAATTATAAG
1 ATTATACTATT-ATTATAAATTATAAG
*
908866 ATTATTCTATTATTATAAATTATA
1 ATTATACTATTATTATAAATTATA
908890 TTTTATTATA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.91
27 2 0.09
ACGTcount: A:0.42, C:0.06, G:0.02, T:0.50
Consensus pattern (26 bp):
ATTATACTATTATTATAAATTATAAG
Found at i:910668 original size:109 final size:109
Alignment explanation
Indices: 910477--910680 Score: 399
Period size: 109 Copynumber: 1.9 Consensus size: 109
910467 CATAATGGTT
910477 AAAATGTGGAGGTAATTTTGTAAATTCATATTGATAAGGGTTATAAGTTTGAGTTAATTATTTTA
1 AAAATGTGGAGGTAATTTTGTAAATTCATATTGATAAGGGTTATAAGTTTGAGTTAATTATTTTA
*
910542 AGTTATTTGAATGGTTTAATTGAATGAAATTCATTATCTAGGTA
66 AGTTATTTGAATGGTTTAATTGAAAGAAATTCATTATCTAGGTA
910586 AAAATGTGGAGGTAATTTTGTAAATTCATATTGATAAGGGTTATAAGTTTGAGTTAATTATTTTA
1 AAAATGTGGAGGTAATTTTGTAAATTCATATTGATAAGGGTTATAAGTTTGAGTTAATTATTTTA
910651 AGTTATTTGAATGGTTTAATTGAAAGAAAT
66 AGTTATTTGAATGGTTTAATTGAAAGAAAT
910681 GTATTACCTA
Statistics
Matches: 94, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
109 94 1.00
ACGTcount: A:0.36, C:0.02, G:0.20, T:0.43
Consensus pattern (109 bp):
AAAATGTGGAGGTAATTTTGTAAATTCATATTGATAAGGGTTATAAGTTTGAGTTAATTATTTTA
AGTTATTTGAATGGTTTAATTGAAAGAAATTCATTATCTAGGTA
Found at i:910936 original size:45 final size:42
Alignment explanation
Indices: 910887--911010 Score: 124
Period size: 44 Copynumber: 2.8 Consensus size: 42
910877 GAGAAACGAT
** **
910887 AAAGACCAT-GATTGAAAGATATCATGGCATTTTACTCGAAATGA
1 AAAGACCATAG-TTGAAAGATA-CATGGCATTAAACAAG-AATGA
*
910931 GAAAGACTATAGTTGAAAGATACTATGGCATTAAACAAGAATGA
1 -AAAGACCATAGTTGAAAGATAC-ATGGCATTAAACAAGAATGA
*
910975 ATAAGACCATAGTTGAAAGATACCATGGCACTAAAC
1 A-AAGACCATAGTTGAAAGATA-CATGGCATTAAAC
911011 CGGAAATGTG
Statistics
Matches: 68, Mismatches: 7, Indels: 9
0.81 0.08 0.11
Matches are distributed among these distances:
43 1 0.01
44 36 0.53
45 30 0.44
46 1 0.01
ACGTcount: A:0.44, C:0.14, G:0.19, T:0.23
Consensus pattern (42 bp):
AAAGACCATAGTTGAAAGATACATGGCATTAAACAAGAATGA
Found at i:919988 original size:216 final size:214
Alignment explanation
Indices: 919521--920157 Score: 809
Period size: 216 Copynumber: 2.9 Consensus size: 214
919511 CGTCATTTTG
* * * * * *
919521 AGTCTGC-CCACTGCAACCTCAGGGAGATAAGACTAGATGAGATCTGCTCT-TTGCAACTTCAGA
1 AGTCTGCTCCACTGTAACCTCAGGGAGATAAGACTTGATGCGATCTACTCTACTGCCACTTCAGA
* * * * * *
919584 GAGCTAAGATCTGTGATTTTAAT-TCGCTCCACTGCAACTTCAGGGAGATAGGATTATAGGCTTA
66 GAGATAAGATCTGTTATTTTAATCT-GCTCCACTGTAACCTCAGGGAGATAGGATTATTGGCTTT
* * * * * *
919648 AATCTGCTCCACTGCAACTTCAGGGAGATAAGAT-TCGTCATTTTGGGTCTGCCCAACTGCAACT
130 AATCTG-TCCACTACTACTT-AGGGAGATAAGATCTC--CATCTTCGATCTGCCC-ACTGCTACT
* * *
919712 TCCGGAGGATAAGACCTGCTTATTC
190 TCAGGGGGATAAGACCTGCTTACTC
* *
919737 AGTCTGCTCCACTGTAACCTTAGGGAGATAAGACTTGATGCGATTTACTCTACTGCCACTTCAGA
1 AGTCTGCTCCACTGTAACCTCAGGGAGATAAGACTTGATGCGATCTACTCTACTGCCACTTCAGA
* **
919802 GAGATAAGATCTGTTTTTTTAATCTGCTCCGTTGTAACCTCAGGGAGATAGGATTATTGGCTTTA
66 GAGATAAGATCTGTTATTTTAATCTGCTCCACTGTAACCTCAGGGAGATAGGATTATTGGCTTTA
919867 AT-TAGATCCACTACTACTTAGGGAGATAAGATCTACCATCTTCGATCTGCCCACTGCTACTTCA
131 ATCT-G-TCCACTACTACTTAGGGAGATAAGATCT-CCATCTTCGATCTGCCCACTGCTACTTCA
919931 GGGGGATAAGACCTGCTTACTC
193 GGGGGATAAGACCTGCTTACTC
*
919953 AGTCTGCTCCACTATAACCTCAGGGAGATAAGACTTGATGCGATCTACTCTACTGCCACTTCAGA
1 AGTCTGCTCCACTGTAACCTCAGGGAGATAAGACTTGATGCGATCTACTCTACTGCCACTTCAGA
* *
920018 GAGATAAGATCTATTATTTTAATCCGCTCCACTGTAACCTCAGGGAGATAGGATTATTGGCTTTA
66 GAGATAAGATCTGTTATTTTAATCTGCTCCACTGTAACCTCAGGGAGATAGGATTATTGGCTTTA
* * * * *
920083 ATCTGTACCACTACTGCTTAGGGATATAAGATCTGTCATCTTCGATCTGCTCCACTACTGCTT-A
131 ATCTGT-CCACTACTACTTAGGGAGATAAGATCT-CCATCTTCGATCTGC-CCACTGCTACTTCA
*
920147 GGGAGATAAGA
193 GGGGGATAAGA
920158 TCTGGGGACT
Statistics
Matches: 370, Mismatches: 42, Indels: 18
0.86 0.10 0.04
Matches are distributed among these distances:
215 1 0.00
216 212 0.57
217 75 0.20
218 80 0.22
219 2 0.01
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.30
Consensus pattern (214 bp):
AGTCTGCTCCACTGTAACCTCAGGGAGATAAGACTTGATGCGATCTACTCTACTGCCACTTCAGA
GAGATAAGATCTGTTATTTTAATCTGCTCCACTGTAACCTCAGGGAGATAGGATTATTGGCTTTA
ATCTGTCCACTACTACTTAGGGAGATAAGATCTCCATCTTCGATCTGCCCACTGCTACTTCAGGG
GGATAAGACCTGCTTACTC
Found at i:920131 original size:44 final size:44
Alignment explanation
Indices: 920090--920300 Score: 264
Period size: 44 Copynumber: 4.8 Consensus size: 44
920080 TTAATCTGTA
* *
920090 CCACTACTGCTTAGGGATATAAGATCTGTCATCTTCGATCTGCT
1 CCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCGATCTGCT
** *
920134 CCACTACTGCTTAGGGAGATAAGATCTGGGGA-CTTCGATATGCT
1 CCACTACTGCTTAGGGAGATAAGATCT-GTAATCTTCGATCTGCT
* * *
920178 CCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAACCTACT
1 CCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCGATCTGCT
* * * ***
920222 CTACTACTGCTTAGGGAGACAAG-GCTGGGGTCTTCGATCTGCT
1 CCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCGATCTGCT
*
920265 CCACTACTGCTTAGGGAGATAAGATTTGTAATCTTC
1 CCACTACTGCTTAGGGAGATAAGATCTGTAATCTTC
920301 AACCTATTCC
Statistics
Matches: 138, Mismatches: 26, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
43 36 0.26
44 100 0.72
45 2 0.01
ACGTcount: A:0.25, C:0.23, G:0.22, T:0.30
Consensus pattern (44 bp):
CCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCGATCTGCT
Found at i:920282 original size:87 final size:88
Alignment explanation
Indices: 920090--920306 Score: 328
Period size: 88 Copynumber: 2.5 Consensus size: 88
920080 TTAATCTGTA
* * * * * *
920090 CCACTACTGCTTAGGGATATAAGATCTGTCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATA
1 CCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAACCTACTCCACTACTGCTTAGGGAGACA
*
920155 AGATCTGGGGACTTCGATATGCT
66 AGAGCTGGGGACTTCGATATGCT
*
920178 CCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAACCTACTCTACTACTGCTTAGGGAGACA
1 CCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAACCTACTCCACTACTGCTTAGGGAGACA
* *
920243 AG-GCTGGGGTCTTCGATCTGCT
66 AGAGCTGGGGACTTCGATATGCT
*
920265 CCACTACTGCTTAGGGAGATAAGATTTGTAATCTTCAACCTA
1 CCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAACCTA
920307 TTCCTTTGCT
Statistics
Matches: 118, Mismatches: 11, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
87 58 0.49
88 60 0.51
ACGTcount: A:0.25, C:0.23, G:0.22, T:0.30
Consensus pattern (88 bp):
CCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAACCTACTCCACTACTGCTTAGGGAGACA
AGAGCTGGGGACTTCGATATGCT
Found at i:920325 original size:131 final size:130
Alignment explanation
Indices: 920121--920371 Score: 303
Period size: 131 Copynumber: 1.9 Consensus size: 130
920111 AGATCTGTCA
* *
920121 TCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGGGGACTTCGATATGCTCCACTACT
1 TCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGGGAACTTCAATAT-CTCCACTACT
** * *
920186 GCTTAGGGAGATAAGA-TCTGTAATCTTCAACCTACTCTACTACTG-CTTAGGGAGACAAGGCTG
65 GCCCAGGGAGATAAGACT-TGCAATCTTCAACCTACTCCACTACTGAC-TAGGGAGACAAGGCTG
920249 GGG
128 GGG
* * ** *
920252 TCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGAT-TTGTAATCTTCAACCTAT-TCCTTTG
1 TCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGGGAA-CTTCAA--TATCTCCACTA
* *
920315 CTGCCCAGGGAGATAGGACTTGCAATCTTCAACCTATTCCACTACTGACTAGGGAGA
63 CTGCCCAGGGAGATAAGACTTGCAATCTTCAACCTACTCCACTACTGACTAGGGAGA
920372 TAGGACTTAC
Statistics
Matches: 102, Mismatches: 13, Indels: 10
0.82 0.10 0.08
Matches are distributed among these distances:
130 3 0.03
131 94 0.92
132 2 0.02
133 3 0.03
ACGTcount: A:0.25, C:0.24, G:0.22, T:0.29
Consensus pattern (130 bp):
TCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGGGAACTTCAATATCTCCACTACTG
CCCAGGGAGATAAGACTTGCAATCTTCAACCTACTCCACTACTGACTAGGGAGACAAGGCTGGGG
Found at i:920327 original size:44 final size:44
Alignment explanation
Indices: 920277--920423 Score: 213
Period size: 44 Copynumber: 3.3 Consensus size: 44
920267 ACTACTGCTT
* * * ** *
920277 AGGGAGATAAGATTTGTAATCTTCAACCTATTCCTTTGCTGCCC
1 AGGGAGATAGGACTTGCAATCTTCAACCTATTCCACTGCTGACC
* *
920321 AGGGAGATAGGACTTGCAATCTTCAACCTATTCCACTACTGACT
1 AGGGAGATAGGACTTGCAATCTTCAACCTATTCCACTGCTGACC
*
920365 AGGGAGATAGGACTTACAATCTTCAACCTATTCCACTGCTGACC
1 AGGGAGATAGGACTTGCAATCTTCAACCTATTCCACTGCTGACC
920409 AGGGAGATAGGACTT
1 AGGGAGATAGGACTT
920424 AAGTTTCACC
Statistics
Matches: 92, Mismatches: 11, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
44 92 1.00
ACGTcount: A:0.29, C:0.23, G:0.20, T:0.28
Consensus pattern (44 bp):
AGGGAGATAGGACTTGCAATCTTCAACCTATTCCACTGCTGACC
Done.