Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold1508

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 975

Length: 1626
ACGTcount: A:0.34, C:0.15, G:0.22, T:0.29


Found at i:82 original size:53 final size:53

Alignment explanation


    Indices: 2--121  Score: 179
    Period size: 53  Copynumber: 2.2  Consensus size: 53

          1 A

                     *                                            
          2 CATCATATGAGAAGAAAACCATATCATGTAAAACCATAACTT-GTGGGTTATGG
          1 CATCATATGGGAAGAAAACCATATCATGTAAAACCATAA-TTGGTGGGTTATGG

                            **                                   
         55 CATCATATGGGAAGAAGCCCATATCATGTAAAACCATAATTGGTGGGTTATGG
          1 CATCATATGGGAAGAAAACCATATCATGTAAAACCATAATTGGTGGGTTATGG

            *             
        108 AATCATATGAGGAA
          1 CATCATATG-GGAA

        122 ATTTAATTTT


Statistics
Matches: 61,  Mismatches: 4, Indels: 3
        0.90            0.06        0.04

Matches are distributed among these distances:
  52    2  0.03
  53   55  0.90
  54    4  0.07

ACGTcount: A:0.38, C:0.14, G:0.22, T:0.26


Consensus pattern (53 bp):   
CATCATATGGGAAGAAAACCATATCATGTAAAACCATAATTGGTGGGTTATGG
Done.