Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold4159

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 344

Length: 574
ACGTcount: A:0.41, C:0.09, G:0.13, T:0.37


Found at i:373 original size:21 final size:21

Alignment explanation


    Indices: 331--373  Score: 59
    Period size: 21  Copynumber: 2.0  Consensus size: 21

        321 CTGGGGTAAA

                             *   
        331 TAATTAATATATAACAATGTT
          1 TAATTAATATATAACAAGGTT

                    *     *      
        352 TAATTAATTTATAATAAGGTT
          1 TAATTAATATATAACAAGGTT

             
        373 T
          1 T

        374 TGTTTGTAAA


Statistics
Matches: 19,  Mismatches: 3, Indels: 0
        0.86            0.14        0.00

Matches are distributed among these distances:
  21   19  1.00

ACGTcount: A:0.44, C:0.02, G:0.07, T:0.47


Consensus pattern (21 bp):   
TAATTAATATATAACAAGGTT
Done.