Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: scaffold901
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 4475
ACGTcount: A:0.27, C:0.23, G:0.18, T:0.31
Warning! 80 characters in sequence are not A, C, G, or T
Found at i:406 original size:132 final size:132
Alignment explanation
Indices: 1--4345 Score: 5100
Period size: 132 Copynumber: 33.0 Consensus size: 132
* * * * *
1 GTGACAGAATCTGCAATCTTTAACCTATTCCACTACTGCTTAGGGAGAGAGGACTAATGGCTTAC
1 GTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAA
* * * * * * * *
66 ATCTGCTTCTCCACTCTCTTGAGAAGATATGATTCACCATCTTCAATCCGCTGCACTAATGCTTA
66 ATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTA
131 GG
131 GG
* * * * *
133 GTGACAGAATCTGTAATCTTCAA-CTGCCTCCAATACTGCTTAGGATGATAGGACTAATGGCTCA
1 GTGACAGAATCTGCAATCTTCAACCT-ACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTA
*
197 AATCTGCTTCTCTACTGTATT-GGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTT
65 AATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTT
261 AGG
130 AGG
** * ** *
264 GTGACAGAATCTAAAATTTTCAACCTACTCCACTACAACTTAAGGTGATAGGACTAATGGCTTAA
1 GTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAA
*
329 ATCTGCTTCTCCACTGTATTGAGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTA
66 ATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTA
394 GG
131 GG
* * **
396 GTGACAGAATCTGCAATCTTCAACCTACTCCACTATTTCTTAGGGTGATAGCCCTAATGGCTTAA
1 GTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAA
******************************
461 ATCTGCTTCTCCACTGTATTGGGAAGATAAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
66 ATCTGCTTCTCCACTGTATTGGGAAGATAAGA---TTCACCATCTTCGATCTGCTCCACTACTGC
*****
526 NNNNN
128 TTAGG
******************************************
531 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGTGATAGGACTAATGGCTTAA
1 GTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAA
* * * *
596 ATCTGCTTCTCCATTGTATTGGGAAGATAAGATTCACCATGTTCGATCTGTTCCACTACCTAC-T
66 ATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTA-CTGCTT
*
660 -GC
130 AGG
* * *
662 TTAGATAGAATCTGCAATCTTCAACCTACTCCAGTACTGCTTAGGGTGATAGGACTAATGGCTTA
1 GT-GACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTA
* * *
727 AATCTGCTTTTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTACAT-CACTACTGGT
65 AATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGC-TCCACTACTGCT
*
791 TACG
129 TAGG
* *
795 GTGACAGAATCTGCAATCTTCAA-CTGACTCTACTACTGCTTAGGGTGATAGGACTAATAGCTTA
1 GTGACAGAATCTGCAATCTTCAACCT-ACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTA
* * * *
859 AATTTTCTTCTCCACTGTATT-GGATAGATAGGATTCACCATCGTCGATCTGCTCCACTACTGCT
65 AATCTGCTTCTCCACTGTATTGGGA-AGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCT
923 TAGG
129 TAGG
* * * *** * * *
927 GTGACAGAATTTGGAATCTTTAACCTACTCCACTACTGCTTTTAGAGATAGGGCTAATGACTTAA
1 GTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAA
* *
992 ATCTGCTTCTCCACTGTATTGGGAAGATATGATTCA-CATCTTCGATCTGCTGCACTACTGCTTA
66 ATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTA
1056 GG
131 GG
* *** * * *
1058 GTGACAGAATCTGCAATCTTCAACCTACTCCACTACTACTTTTAGAGATAGGGCTAATGACTTAA
1 GTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAA
* * * *
1123 ATCTGCTTCTCCACTGTATTGGGAAAATAAAATTCACAGATCTTCGATCTACTCCACTACTGCTT
66 ATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCAC-CATCTTCGATCTGCTCCACTACTGCTT
1188 AGG
130 AGG
* *
1191 GTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGTTTTGGGTGATAGGACTAATGGCTTAA
1 GTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAA
* *
1256 ATCTGCTTCTCCACTGTATTGGGAAGATAAGACTCACCATCTTCGATCCGCTCCACTACTGCTTA
66 ATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTA
*
1321 GA
131 GG
** ** *
1323 GTGACAGAATCTAAAATCTTCAACCTACTCCACTACAACTTGGGGTGATAGGACTAATGGCTTAA
1 GTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAA
*
1388 ATCTGCTTCTCCACTGTATTGAGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTA
66 ATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTA
1453 GG
131 GG
* * * * * *
1455 GTG-CAGAATCTGTAATCTTCAACCTACTCCACTATTTCTTAGGGTGTTTGCACTAATGGCTTAA
1 GTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAA
* * * *
1519 ATCTGCTTCACCACTGTATTGGGAAGATAAGAATCACCATCTTCGATCCGCTCCACTACTGGTTA
66 ATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTA
1584 GG
131 GG
* * * *
1586 ATGACAGAATCTTG-AATCTTCAACCGACTCCACTACTGCTTTGCGTGATAGGACTAATGGCTTA
1 GTGACAGAATC-TGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTA
* * * * *
1650 AATCTGCTTTTCCATTGTATTGGGAAGATAAGATTCACTATGTTCGATCCGCTCCACTACTGCTT
65 AATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTT
1715 AGG
130 AGG
*
1718 GTGATAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAA
1 GTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAA
* *
1783 ATCTGCTTTTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCAT-CACTACTGGTT
66 ATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGC-TCCACTACTGCTT
*
1847 ACG
130 AGG
*
1850 GTGACAGAATCTGCAATCTTCAA-CTGACTCTACTACTGCTTAGGGTGATAGGACTAATGGCTTA
1 GTGACAGAATCTGCAATCTTCAACCT-ACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTA
* * * *
1914 AATTTGCTTCTCTACTGTATTGGAAAGATAGGATTCACCATCGTT-GATCTGCTCCACTACTGCT
65 AATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATC-TTCGATCTGCTCCACTACTGCT
1978 TAGG
129 TAGG
* * * *
1982 GTGACAGAATTTGGAATCTTTAACCTACTCCACTACTGCTTAGGGTTATAGGACTAATGGCTTAA
1 GTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAA
* * * * * *
2047 ATCTGCTTCTCCACTGAATTGGGAAAATAAGATTCATCATATTCGATCTGCTTCACTACTGTTTA
66 ATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTA
2112 GG
131 GG
* * * *
2114 GTGACAGAATCTGCAATCTTCAGCCTACTCCACTTCTACTTAGGGTGATAGGACTAATGCCTTAA
1 GTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAA
* * * * * *
2179 ATCTGCTTCTCCACTATATTGGGAGGATAAGATTTACTATATTCGATCTGCTCTACTACTGCTTA
66 ATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTA
*
2244 GA
131 GG
* * *
2246 GTGACAGAAACTGGAATCTTCAACCTACTCCACTACTGCATAGGGTGACT-GGACTAATGGCTTA
1 GTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGA-TAGGACTAATGGCTTA
** **
2310 AATCTGCTTCTCCACTGTATTGGGAAGATAAGATTGTCCATAGTCGATCTGCTCCACTACTGCTT
65 AATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTT
2375 AGG
130 AGG
* ** * *
2378 GTTACAGAATCTGTGACCTTCAACCTACTCCACTACTGCTTAGGGTGATTGGACTAATGGCTTAA
1 GTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAA
* *
2443 ATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACTATCTTCGATCTACTCCACTACTGCTTA
66 ATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTA
2508 GG
131 GG
* * * * *
2510 GTGACAGAATCTGTAATCTTTAACCTACACCACTACTGCTTAGGGTGATATGACTACTGGCTTAA
1 GTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAA
* * * * *
2575 AT-TGCTTCTCAACTGTATTGGGAAAATAAGATTCATCATATTCGATCTGCGT-CACTACTGTTT
66 ATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGC-TCCACTACTGCTT
2638 AGG
130 AGG
* * * * **
2641 GTGACAGAATCTGTAATCTTCAACCAATTCCACTA-TGGCTAAGGGAAATAGGACTAATGGCTTA
1 GTGACAGAATCTGCAATCTTCAACCTACTCCACTACT-GCTTAGGGTGATAGGACTAATGGCTTA
* * * ** *
2705 AATCTGCTTCTCCACTCTATTGGGAAAATAAGATTCACCAGCTTCGATCTATTCCAATACTGCTT
65 AATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTT
2770 AGG
130 AGG
* * * * *
2773 GTGACAAAATCTGTAATCTTCAACCTACTCCACTACTGCTTAGGGAGATAGGACCAATGGCTGAA
1 GTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAA
* * * * * * * *
2838 ATCTGCTTTTCCATTATCTTGAGAAGATAAGAATCACCATCTTCGATCCGATCCACTACTGCTTA
66 ATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTA
2903 GG
131 GG
2905 GTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAA
1 GTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAA
* *
2970 ATCTGCTTCTCCACTGTATTGTGAAGATAAGATTCACCATCTTCGAACTGCATCC-CTACTGCTT
66 ATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGC-TCCACTACTGCTT
3034 AGG
130 AGG
*
3037 GTGACAGAATCTGCAATCTTCAACCGACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAA
1 GTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAA
* * *
3102 ATCTGCTTCTCCACTGTATTGGGAAGATAGGATTCACCATCGTCGATCTGCTCCACTACTGCATA
66 ATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTA
3167 GG
131 GG
* *
3169 GTGACAGAATCTGCAATCTTTAACCTACTCCAGC-ACTGCTTTGGGTGATAGGACTAATGGCTTA
1 GTGACAGAATCTGCAATCTTCAACCTACTCCA-CTACTGCTTAGGGTGATAGGACTAATGGCTTA
* * * * *
3233 AATCTGCTTCTCCACTGTATTGGGAAAATAAGATTCATCATTCTT-AATCTCCTACACTACTGCT
65 AATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCA-TCTTCGATCTGCTCCACTACTGCT
3297 TAGG
129 TAGG
* *
3301 GTGACAGAATCTGTAATCTTCAACCGACTCCACTACTGCTTA----G---GG------GGCTTAA
1 GTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAA
* *
3353 ATCTGCTTCTCCACTGTATGGGGAAAATAAGATTCACCATCTTCGATCTGCAT-CACTACTGCTT
66 ATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGC-TCCACTACTGCTT
3417 AGG
130 AGG
*
3420 GTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATTGGACTAATGGCTTAA
1 GTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAA
* *
3485 ATCTGCATCTCCACCGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTA
66 ATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTA
3550 GG
131 GG
* *
3552 GTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGTTGATAGGAGTAATGGCTTAA
1 GTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAA
* * * * * * *
3617 ATCTGCTTCTCTACTGAATTGGGAAAATAAGATTCATCATATTCGATCTGCTTCACTACTGTTTA
66 ATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTA
3682 GG
131 GG
* * ** *
3684 GTGACAGAATCTGTAATCTTCAACC-AGCTGCACTA-TGGCTTAGGAAGATAGGATTAATGGCTT
1 GTGACAGAATCTGCAATCTTCAACCTA-CTCCACTACT-GCTTAGGGTGATAGGACTAATGGCTT
* * * * * * * *
3747 AATTCTGCTTCTCCACTGTACTGGGAAGATAAGGTTAATCATATTCGACCTACTCCACTACTGCT
64 AAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCT
3812 TAGG
129 TAGG
* * * * * * * * *
3816 GTGACAAAATCTGCTATCTTTAGCCTACTCCACTACTACTCAGGGAGATAGGGCTAATGGCTTTA
1 GTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAA
* * *
3881 ATCTACTACTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTACTCC-CGTACTGCTT
66 ATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCAC-TACTGCTT
3945 AGG
130 AGG
* * ** *
3948 GTGACAGAATCTGTAATCTTCAACC-AGCTGCACTA-TGGCTTAGGAAGATAGGATTAATGGCTT
1 GTGACAGAATCTGCAATCTTCAACCTA-CTCCACTACT-GCTTAGGGTGATAGGACTAATGGCTT
* * * * * * * *
4011 AATTCTGCTTCTCCACTGTACTGGGAAGATAAGGTTAATCATATTCGACCTCCTCCACTACTGCT
64 AAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCT
4076 TAGG
129 TAGG
* * * ** * *
4080 GTGATAGAATCTGCAATTTTCAACCTACTCTACTACTATTTGGGGTGATAGGACTAATGACTTAA
1 GTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAA
* *
4145 ATCTGCTTCTCCACTGTATT-AGAAGATAAGATTCACCATCTTCGATCTACTCCACTACTGCTTA
66 ATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTA
4209 GG
131 GG
* * * ** * *
4211 GTGATAGAATCTGCAATTTTCAACCTACTCTACTACTATTTGGGGTGATAGGACTAATGACTTAA
1 GTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAA
* *
4276 ATCTGCTTCTCCACTGTATT-AGAAGATAAGATTCACCATCTTCGATCTACTCCACTACTGCTTA
66 ATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTA
4340 GG
131 GG
4342 GTGA
1 GTGA
4346 TGGGACTAAT
Statistics
Matches: 3580, Mismatches: 568, Indels: 131
0.84 0.13 0.03
Matches are distributed among these distances:
118 4 0.00
119 103 0.03
120 1 0.00
123 1 0.00
125 2 0.00
126 2 0.00
128 1 0.00
130 1 0.00
131 663 0.19
132 2603 0.73
133 147 0.04
135 52 0.01
ACGTcount: A:0.27, C:0.23, G:0.18, T:0.31
Consensus pattern (132 bp):
GTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAA
ATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTA
GG
Found at i:2937 original size:44 final size:44
Alignment explanation
Indices: 2889--3084 Score: 131
Period size: 44 Copynumber: 4.5 Consensus size: 44
2879 TTCGATCCGA
2889 TCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTAC
1 TCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTAC
* * * *
2933 TCCACTACTGCTTAGGGTGATAGGA-CT--AATGGCTTAAATCTGCTTC
1 TCCACTACTGCTTAGGGTGACAGAATCTGCAAT--CTTCAA-C--CTAC
* * * * * * * *
2979 TCCACTGTATTG-TGAAGAT-A-AGATTC-ACCATCTTCGAA-CTGC
1 TCCAC--TACTGCTTAGGGTGACAGAATCTGCAATCTTC-AACCTAC
*
3021 ATCC-CTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCGAC
1 -TCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTAC
3065 TCCACTACTGCTTAGGGTGA
1 TCCACTACTGCTTAGGGTGA
3085 TAGGACTAAT
Statistics
Matches: 112, Mismatches: 22, Indels: 36
0.66 0.13 0.21
Matches are distributed among these distances:
40 4 0.04
41 7 0.06
42 5 0.04
43 20 0.18
44 49 0.44
45 5 0.04
46 12 0.11
47 6 0.05
48 4 0.04
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.29
Consensus pattern (44 bp):
TCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTAC
Found at i:4352 original size:87 final size:88
Alignment explanation
Indices: 4235--4433 Score: 256
Period size: 87 Copynumber: 2.3 Consensus size: 88
4225 AATTTTCAAC
* * * *
4235 CTACTCTACTACTATTTGGGGTGATAGGACTAATGACTTAAATCTGCTTCTCCACTGTATT-AGA
1 CTACTCCACTACTGTTTAGGGTGATAGGACTAATGACTTAAATCTGCTTCTCCACTGAATTGAGA
* *
4299 AGATAAGATTCACCATCTTCGAT
66 AAATAAGATTCACCATATTCGAT
* * * * *
4322 CTACTCCACTACTGCTTAGGGTGATGGGACTAATGGCTTAAATTTGCTTCTCCACTGAATTGGGA
1 CTACTCCACTACTGTTTAGGGTGATAGGACTAATGACTTAAATCTGCTTCTCCACTGAATTGAGA
*
4387 AAATAAGATTCATCATATTCGAT
66 AAATAAGATTCACCATATTCGAT
* * *
4410 CTGCTTCACTACTGTTTAGTGTGA
1 CTACTCCACTACTGTTTAGGGTGA
4434 CAGAATCTGC
Statistics
Matches: 95, Mismatches: 16, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
87 53 0.56
88 42 0.44
ACGTcount: A:0.27, C:0.20, G:0.18, T:0.35
Consensus pattern (88 bp):
CTACTCCACTACTGTTTAGGGTGATAGGACTAATGACTTAAATCTGCTTCTCCACTGAATTGAGA
AAATAAGATTCACCATATTCGAT
Done.