genome.fa.s1544.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold89
Parameters: 2 7 7 80 10 50 1000
Length:  1412700

Tables:   1   2   3   4   5   

This is table  2  of  5  ( 506 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
312580--312611	13	2.3	15	89	10	50	43	0	0	56	0.99
316899--317149	43	5.8	43	92	0	378	19	17	33	28	1.95
317194--317237	22	2.0	22	95	0	79	47	27	15	9	1.76
321824--322928	554	2.0	553	89	2	1691	36	14	12	36	1.83
332380--332481	46	2.2	46	82	0	123	29	15	12	42	1.84
333376--333432	22	2.6	22	82	0	69	28	21	15	35	1.94
333485--333526	21	2.0	21	95	0	75	28	19	16	35	1.93
337469--337524	27	2.1	27	93	0	94	37	10	21	30	1.87
338752--338794	20	2.2	20	87	8	61	34	16	18	30	1.93
342463--342519	10	5.2	11	74	21	57	21	35	0	43	1.52
342480--342535	22	2.5	22	97	2	103	28	32	0	39	1.57
342529--342615	29	3.2	29	62	26	73	29	26	0	43	1.55
342507--342622	51	2.3	51	98	0	223	27	27	0	44	1.54
343222--343246	7	3.6	7	100	0	50	28	0	12	60	1.32
343895--343929	18	1.9	18	94	0	61	25	31	8	34	1.86
349001--349073	11	7.1	10	74	11	51	53	1	1	43	1.17
349007--349083	33	2.5	29	80	12	82	55	1	2	40	1.22
349029--349092	21	3.0	21	77	15	69	54	0	1	43	1.09
349002--349092	42	2.1	42	82	9	105	51	1	2	45	1.20
349001--349074	10	7.3	10	72	15	55	52	1	1	44	1.17
349002--349115	43	2.7	40	75	15	104	50	1	1	45	1.22
350812--350853	18	2.3	18	88	8	59	35	2	0	61	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
350809--350852	19	2.4	19	84	3	63	34	2	0	63	1.07
358204--358228	6	4.2	6	100	0	50	84	0	0	16	0.63
360759--360955	50	3.8	49	77	11	164	28	20	27	23	1.99
360811--360955	49	2.9	49	78	10	141	26	21	28	22	1.99
364953--365048	40	2.3	42	75	15	101	23	26	30	19	1.98
372094--372227	45	3.0	45	84	2	173	20	16	27	35	1.94
373064--373564	249	2.0	250	99	0	995	33	6	23	35	1.82
377758--377857	27	3.7	27	70	5	67	26	24	11	39	1.88
380992--381139	43	3.5	42	76	12	142	29	22	17	30	1.97
381025--381129	43	2.5	43	87	9	146	27	24	18	29	1.98
381477--381697	68	3.2	68	90	1	336	40	15	16	27	1.89
384552--384595	20	2.2	20	84	11	56	54	0	2	43	1.12
385076--385120	20	2.2	20	84	8	54	66	4	0	28	1.11
385399--385435	20	1.9	20	88	5	58	32	2	2	62	1.23
386594--386626	16	2.0	17	88	5	50	15	3	6	75	1.11
413387--413568	87	2.1	87	86	0	247	29	21	24	24	1.99
413769--414126	44	8.3	43	68	13	166	32	19	22	25	1.97
413750--413868	44	2.7	44	74	14	122	33	20	20	26	1.97
413749--413995	128	1.9	127	79	8	270	31	21	22	24	1.98
414196--414401	44	4.5	44	65	17	130	33	17	19	30	1.95
413992--414415	142	3.0	142	95	0	751	33	17	21	28	1.96
414483--414757	50	5.5	49	71	7	203	34	23	20	22	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
414465--414754	100	2.9	99	87	4	395	34	23	20	22	1.97
416570--416608	19	2.1	19	100	0	78	23	10	15	51	1.73
418174--418311	40	3.5	40	80	0	168	27	23	21	26	1.99
418545--418597	18	2.9	18	80	2	61	41	45	1	11	1.51
418626--418675	20	2.5	20	83	9	66	64	10	2	24	1.35
418695--418788	9	10.4	9	84	0	125	26	11	21	40	1.87
424062--424100	18	2.2	18	86	9	53	41	2	0	56	1.13
426852--426912	24	2.6	24	72	12	63	42	16	11	29	1.83
426911--427264	23	15.2	23	70	15	183	41	18	12	27	1.86
426856--427287	93	4.6	93	95	0	765	40	18	12	27	1.87
427278--427305	14	2.0	14	100	0	56	42	14	7	35	1.73
433093--434531	70	20.6	70	83	1	1614	28	28	19	24	1.98
434999--435024	7	3.7	7	100	0	52	26	0	0	73	0.84
439848--439884	17	2.1	18	90	5	58	29	5	5	59	1.42
445238--445270	15	2.2	15	94	0	57	15	15	0	69	1.19
447126--447226	27	3.7	27	77	2	96	29	28	11	29	1.92
454067--454142	9	8.4	9	85	0	107	42	22	10	25	1.85
464768--464797	15	1.9	16	93	6	53	46	10	10	33	1.71
472903--472946	13	3.4	13	84	9	54	4	25	0	70	1.06
473016--473047	13	2.5	13	94	0	55	56	0	3	40	1.15
485228--485271	3	14.7	3	100	0	88	65	0	0	34	0.93
485242--485363	61	2.0	61	98	0	235	49	11	10	28	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
485303--485332	3	10.0	3	100	0	60	66	0	0	33	0.92
492437--492470	17	2.0	17	100	0	68	52	5	0	41	1.25
492806--492862	23	2.5	22	82	2	69	31	8	14	45	1.75
502859--502892	17	2.0	17	100	0	68	52	5	0	41	1.25
503228--503284	23	2.5	22	82	2	69	31	8	14	45	1.75
504098--504132	2	17.5	2	100	0	70	48	0	0	51	1.00
504639--504665	2	13.5	2	100	0	54	51	0	0	48	1.00
505175--505208	17	2.0	17	100	0	68	52	5	0	41	1.25
505544--505600	23	2.5	22	82	2	69	31	8	14	45	1.75
506411--506437	2	13.5	2	100	0	54	51	0	0	48	1.00
512461--512508	18	2.7	18	96	0	87	35	12	12	39	1.81
512937--513175	72	3.3	72	90	1	365	23	6	15	54	1.63
520966--521095	41	3.2	41	83	9	176	29	20	27	22	1.99
521260--521355	44	2.1	45	84	7	124	33	8	19	38	1.82
525450--525765	118	2.7	120	89	3	494	50	12	3	33	1.56
525711--525828	55	2.1	57	92	4	195	50	16	0	33	1.45
525864--528213	118	19.9	118	99	0	4524	50	11	4	33	1.60
528252--528328	16	4.5	16	70	24	50	51	12	0	35	1.40
537170--537217	23	2.1	23	100	0	96	33	14	8	43	1.75
537239--537314	31	2.5	31	88	0	116	42	17	13	27	1.86
537713--537813	40	2.5	40	95	0	184	33	25	17	22	1.96
538771--538833	29	2.3	27	83	10	74	31	23	3	41	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
544643--544683	17	2.4	17	95	0	73	29	19	12	39	1.88
547638--547676	20	2.0	20	85	10	53	38	17	10	33	1.84
553256--553497	28	8.6	28	85	0	268	24	18	14	42	1.88
553256--553497	84	2.9	84	84	4	310	24	18	14	42	1.88
557437--557470	18	1.9	17	88	5	50	58	0	5	35	1.22
564761--564827	27	2.5	27	82	0	89	19	25	32	22	1.97
565852--565894	19	2.2	20	84	12	63	32	18	0	48	1.48
566015--566095	38	2.2	38	82	6	94	28	27	23	20	1.99
567498--567554	29	2.0	29	86	6	80	52	3	1	42	1.28
573980--574016	2	18.5	2	100	0	74	0	48	0	51	1.00
575021--575053	12	2.8	12	95	0	57	0	42	0	57	0.98
575349--575592	124	2.0	124	88	1	364	22	18	20	38	1.93
576833--576878	17	2.6	18	82	6	67	39	4	0	56	1.19
583253--583465	84	2.5	82	89	6	313	20	8	19	51	1.72
583263--583465	81	2.5	81	91	3	316	20	8	18	51	1.72
586271--586301	16	1.9	16	93	0	53	9	9	9	70	1.33
602283--602329	18	2.5	18	80	16	51	48	0	4	46	1.21
612721--612768	2	24.0	2	91	0	78	50	0	50	0	1.00
615029--615071	22	2.0	22	81	9	52	60	9	0	30	1.28
616474--616714	120	2.0	120	96	0	446	24	15	17	42	1.88
625620--626158	69	7.8	69	85	0	648	35	25	19	19	1.96
625622--626158	207	2.6	207	86	0	741	35	25	19	19	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
632108--632140	11	2.9	12	91	8	52	42	9	0	48	1.35
641050--641162	57	2.0	57	85	3	156	36	12	22	29	1.90
649251--649426	50	3.6	48	83	3	203	23	30	21	25	1.99
649251--649436	96	1.9	98	85	4	259	22	30	21	25	1.99
649596--649666	23	3.2	23	61	15	58	40	9	5	43	1.61
649582--649669	44	2.0	44	100	0	176	40	9	4	45	1.56
656274--656360	43	2.0	43	97	0	165	25	31	9	34	1.87
656690--656776	43	2.0	43	97	0	165	25	31	9	34	1.87
656100--656933	416	2.0	416	100	0	1668	31	20	11	37	1.87
658569--658669	49	2.1	49	83	10	127	30	27	14	26	1.95

Tables:   1   2   3   4   5