genome.fa.s155.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold474
Parameters: 2 7 7 80 10 50 1000
Length:  172927

Tables:   1   

This is table  1  of  1  ( 62 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
447--508	29	2.1	30	82	11	74	59	1	1	37	1.17
17257--17287	3	10.3	3	100	0	62	67	0	0	32	0.91
26307--26332	5	5.2	5	100	0	52	38	19	0	42	1.51
26667--26698	2	16.0	2	100	0	64	50	0	0	50	1.00
32443--32485	17	2.4	19	84	11	63	44	2	0	53	1.13
32456--32493	18	2.1	18	85	9	51	44	0	0	55	0.99
32934--32978	22	2.0	23	82	4	56	26	6	13	53	1.64
38329--38359	2	15.5	2	100	0	62	48	0	0	51	1.00
39349--39389	17	2.4	17	87	4	55	60	2	0	36	1.10
39460--39532	38	1.9	38	82	0	92	54	2	10	31	1.49
40258--40292	18	1.9	18	94	0	61	65	2	0	31	1.07
40258--40293	19	1.9	18	88	5	54	66	2	0	30	1.06
57396--57615	43	5.3	42	80	7	236	30	30	17	20	1.96
57502--57573	36	2.0	36	91	0	117	26	34	16	22	1.95
61931--61966	14	2.6	13	87	12	54	33	47	0	19	1.50
62670--62719	14	3.6	14	86	0	64	32	48	0	20	1.50
63669--63912	41	5.9	41	88	3	355	29	28	20	21	1.98
63675--63912	125	1.9	126	91	0	388	30	28	19	21	1.98
63899--64015	40	3.0	40	84	2	148	24	17	18	39	1.92
67012--67064	16	3.3	16	74	10	54	37	24	5	32	1.79
67255--67381	41	3.2	41	84	5	156	32	22	19	25	1.98
68207--68236	15	1.9	16	93	6	53	0	20	0	80	0.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68209--68246	19	2.0	19	85	10	51	0	23	2	73	0.95
70465--70508	18	2.4	18	81	7	54	43	15	0	40	1.47
70773--70828	14	3.8	14	75	13	58	1	25	3	69	1.14
70802--70845	22	2.0	22	82	4	54	2	18	2	77	0.98
70812--70859	9	5.3	9	83	16	55	6	14	0	79	0.92
71358--71758	210	1.9	208	84	3	529	23	16	13	45	1.84
76154--76183	16	1.9	16	93	6	53	50	3	6	40	1.45
84549--84587	21	2.0	20	90	10	62	41	30	2	25	1.69
86626--86655	8	3.8	8	95	0	51	60	3	0	36	1.14
98790--98841	4	12.8	4	80	11	61	25	3	0	71	1.03
100000--100042	2	21.5	2	100	0	86	0	48	0	51	1.00
100120--100325	85	2.4	85	100	0	412	38	22	15	23	1.92
103137--103165	9	3.2	9	100	0	58	41	0	0	58	0.98
112323--112356	3	11.3	3	100	0	68	64	0	35	0	0.94
119129--119175	24	2.0	24	91	0	76	38	2	8	51	1.45
121611--121762	13	11.5	13	68	14	78	35	17	3	44	1.65
121609--121664	27	2.1	27	90	6	87	37	16	1	44	1.58
121611--121750	40	3.5	40	75	8	133	36	16	2	44	1.63
121611--121762	80	1.9	79	79	4	171	35	17	3	44	1.65
125969--126024	22	2.5	23	82	2	69	51	1	1	44	1.22
126000--126039	16	2.5	16	91	0	62	47	2	7	42	1.45
126168--126213	24	1.9	24	86	8	67	58	2	0	39	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
130436--132796	213	11.1	213	99	0	4609	34	20	17	28	1.95
137448--137589	68	2.1	66	92	2	230	45	9	4	40	1.57
137578--137619	16	2.6	16	92	0	66	42	7	2	47	1.43
137593--137648	23	2.5	23	82	2	69	44	1	1	51	1.22
138433--138533	47	2.1	47	100	0	202	44	9	17	27	1.81
141002--141038	18	2.1	18	89	0	56	32	0	5	62	1.18
151515--151563	20	2.4	21	90	6	75	32	2	8	57	1.40
151946--152004	32	1.9	32	86	6	86	37	1	1	59	1.18
151973--152012	18	2.2	19	86	4	55	35	0	0	65	0.93
152161--152218	30	1.9	30	85	3	80	37	1	1	58	1.18
152187--152226	18	2.2	19	86	4	55	35	0	0	65	0.93
151946--152379	214	2.0	215	99	0	861	35	11	12	40	1.79
153720--153774	16	3.1	18	87	10	69	60	1	0	38	1.08
165054--165087	3	11.3	3	100	0	68	64	0	35	0	0.94
166504--166528	13	1.9	13	100	0	50	64	0	0	36	0.94
170029--170075	24	2.0	24	91	0	76	38	2	8	51	1.45
171144--171181	17	2.2	17	100	0	76	28	10	10	50	1.70
172260--172284	13	1.9	13	100	0	50	36	16	16	32	1.90

Tables:   1

The End!