genome.fa.s1565.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold509
Parameters: 2 7 7 80 10 50 1000
Length:  113942

Tables:   1   

This is table  1  of  1  ( 49 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4--40	16	2.3	16	100	0	74	21	35	5	37	1.77
11656--11808	44	3.4	44	73	7	155	32	21	19	26	1.97
11802--11869	33	2.1	33	97	0	127	44	7	20	27	1.78
11424--11925	208	2.4	208	78	8	658	34	17	19	28	1.95
11835--12057	44	5.3	43	67	13	113	31	17	21	29	1.96
11837--12069	127	1.8	128	85	3	308	32	17	21	28	1.96
11837--12113	127	2.1	128	80	5	290	32	16	21	29	1.95
12500--12529	11	2.7	11	89	0	51	70	0	0	30	0.88
22414--22453	21	2.0	20	85	14	55	40	2	10	47	1.50
29308--29502	43	4.6	43	83	4	236	23	16	20	39	1.92
29308--29521	86	2.5	86	80	3	263	23	16	20	39	1.91
29309--29545	43	5.5	43	81	4	212	23	15	20	40	1.90
29308--29546	85	2.8	84	78	4	257	23	15	20	41	1.90
29540--29589	19	2.6	19	80	0	64	20	24	20	36	1.95
33050--33098	25	2.0	25	83	0	62	38	0	16	44	1.48
33430--33470	18	2.3	18	100	0	82	9	31	29	29	1.89
37565--37613	25	2.0	25	83	0	62	36	20	22	20	1.95
39727--39779	24	2.2	25	86	3	72	18	35	1	43	1.62
42443--42488	19	2.6	18	83	10	58	32	4	13	50	1.61
43910--44024	44	2.6	44	73	16	105	23	19	26	30	1.98
46818--46855	16	2.3	17	86	4	51	73	2	5	18	1.14
47868--47904	15	2.6	15	83	8	51	72	0	13	13	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47868--47918	12	3.8	13	78	14	59	76	0	13	9	1.02
47891--47920	6	5.0	6	91	0	51	80	0	16	3	0.85
47956--48076	33	3.7	32	79	5	125	57	6	26	9	1.56
47966--48057	18	5.4	18	70	19	81	61	5	22	9	1.47
47956--48080	66	1.9	67	81	5	155	55	7	26	11	1.61
50378--50423	19	2.6	18	83	10	58	32	4	13	50	1.61
52332--52382	7	7.3	7	97	0	93	27	0	11	60	1.31
55908--55936	11	2.6	11	100	0	58	34	17	10	37	1.84
56264--56319	29	2.0	28	86	10	78	30	28	3	37	1.74
58103--58139	18	2.0	19	89	5	58	40	13	8	37	1.74
58214--58249	9	4.0	9	100	0	72	55	11	0	33	1.35
58233--58278	23	2.0	23	83	8	58	54	8	0	36	1.32
59778--59850	19	3.8	19	78	8	67	50	1	1	46	1.18
59783--59850	20	3.6	19	75	9	59	51	0	1	47	1.09
61263--61318	29	1.9	29	85	7	78	46	19	10	23	1.81
69179--69215	2	18.5	2	100	0	74	51	0	0	48	1.00
72493--72538	19	2.4	19	85	3	56	76	10	0	13	1.03
72911--72949	3	13.0	3	100	0	78	33	0	0	66	0.92
74171--74235	31	2.1	31	100	0	130	35	9	9	46	1.68
79138--79380	51	4.8	51	77	3	265	30	26	15	28	1.96
79138--79380	102	2.4	100	91	3	389	30	26	15	28	1.96
90860--90900	21	2.0	21	100	0	82	39	4	29	26	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
97041--97080	20	2.1	18	86	9	53	70	7	2	20	1.24
98430--98577	72	2.0	73	98	1	289	43	10	8	38	1.68
105237--105282	16	2.7	18	80	12	53	47	0	36	15	1.45
105337--105516	94	1.9	94	100	0	360	27	11	22	38	1.88
107469--107799	110	3.0	110	98	0	626	30	20	14	34	1.93

Tables:   1

The End!