Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold1781

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 783

Length: 1305
ACGTcount: A:0.32, C:0.23, G:0.20, T:0.25


Found at i:87 original size:44 final size:44

Alignment explanation


    Indices: 24--110  Score: 138
    Period size: 44  Copynumber: 2.0  Consensus size: 44

         14 AGATCGCATC

                                                        
         24 AGATTGAAGCCAGAAATCCTATCTCCCTGACATTACAGCGGAGT
          1 AGATTGAAGCCAGAAATCCTATCTCCCTGACATTACAGCGGAGT

                      *  *                *       *    
         68 AGATTGAAGCTAGTAATCCTATCTCCCTGATATTACAGTGGAG
          1 AGATTGAAGCCAGAAATCCTATCTCCCTGACATTACAGCGGAG

        111 CGGATTAAAA


Statistics
Matches: 39,  Mismatches: 4, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
  44   39  1.00

ACGTcount: A:0.31, C:0.22, G:0.21, T:0.26


Consensus pattern (44 bp):   
AGATTGAAGCCAGAAATCCTATCTCCCTGACATTACAGCGGAGT
Done.