Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold744

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7785
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.26

Warning! 768 characters in sequence are not A, C, G, or T


Found at i:708 original size:13 final size:13

Alignment explanation


    Indices: 687--721  Score: 52
    Period size: 13  Copynumber: 2.7  Consensus size: 13

        677 TAAATGTTCC

                *        
        687 AATTCAGCTGATT
          1 AATTAAGCTGATT

                         
        700 AATTAAGCTGATT
          1 AATTAAGCTGATT

             *       
        713 ACTTAAGCT
          1 AATTAAGCT

        722 TGAAGAGTTC


Statistics
Matches: 20,  Mismatches: 2, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
  13   20  1.00

ACGTcount: A:0.34, C:0.14, G:0.14, T:0.37


Consensus pattern (13 bp):   
AATTAAGCTGATT

Found at i:2400 original size:12 final size:12

Alignment explanation


    Indices: 2383--2431  Score: 71
    Period size: 12  Copynumber: 4.0  Consensus size: 12

       2373 TATAGTTTCG

                        
       2383 AAAAAAATTTGA
          1 AAAAAAATTTGA

                     *   
       2395 AAAAAAATTCGAA
          1 AAAAAAATTTG-A

                      * 
       2408 AAAAAAATTTCA
          1 AAAAAAATTTGA

                        
       2420 AAAAAAATTTGA
          1 AAAAAAATTTGA

       2432 GTACAAAAAA


Statistics
Matches: 32,  Mismatches: 4, Indels: 2
        0.84            0.11        0.05

Matches are distributed among these distances:
  12   22  0.69
  13   10  0.31

ACGTcount: A:0.67, C:0.04, G:0.06, T:0.22


Consensus pattern (12 bp):   
AAAAAAATTTGA
Done.