Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold1773

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 788

Length: 1314
ACGTcount: A:0.28, C:0.21, G:0.16, T:0.35


Found at i:1015 original size:60 final size:61

Alignment explanation


    Indices: 884--1032  Score: 176
    Period size: 60  Copynumber: 2.5  Consensus size: 61

        874 TTGGTCTAAG

                       *             * *               *       *         *
        884 GCGCCATTTG-CGGGTTTTCACCTTAGCCTCTCCCTTTTTTTTTTTCTTTTTTTTACTCAAT
          1 GCGCCATTTGTAGGG-TTTCACCTTGGTCTCTCCCTTTTTTTTATTCTTTTATTTACTCAAA

              *  *                *         *                            
        945 GCTCCCTTTGTAGGGTTTCACCCTGGTCTCTCTCTTTTTTTTATT-TTTTATTTACTCAAA
          1 GCGCCATTTGTAGGGTTTCACCTTGGTCTCTCCCTTTTTTTTATTCTTTTATTTACTCAAA

                          *             
       1005 GCGCCATTTGTAGGCTTTCACCTTGGTC
          1 GCGCCATTTGTAGGGTTTCACCTTGGTC

       1033 CCACCTTTTT


Statistics
Matches: 73,  Mismatches: 14, Indels: 3
        0.81            0.16        0.03

Matches are distributed among these distances:
  60   37  0.51
  61   33  0.45
  62    3  0.04

ACGTcount: A:0.11, C:0.26, G:0.14, T:0.49


Consensus pattern (61 bp):   
GCGCCATTTGTAGGGTTTCACCTTGGTCTCTCCCTTTTTTTTATTCTTTTATTTACTCAAA

Done.