Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold2463

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 563

Length: 939
ACGTcount: A:0.22, C:0.15, G:0.14, T:0.24

Warning! 235 characters in sequence are not A, C, G, or T


Found at i:123 original size:4 final size:4

Alignment explanation


    Indices: 99--140  Score: 57
    Period size: 4  Copynumber: 10.2  Consensus size: 4

         89 ATATACAAAA

                  *        *                                    
         99 GAAT GTAT GAAT AATAT GAAT GAAT GAAT GAAT GAAT GAAT G
          1 GAAT GAAT GAAT GA-AT GAAT GAAT GAAT GAAT GAAT GAAT G

        141 GTTTGGTAGA


Statistics
Matches: 33,  Mismatches: 4, Indels: 2
        0.85            0.10        0.05

Matches are distributed among these distances:
   4   30  0.91
   5    3  0.09

ACGTcount: A:0.48, C:0.00, G:0.24, T:0.29


Consensus pattern (4 bp):   
GAAT

Done.