Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold2041

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 681

Length: 1135
ACGTcount: A:0.30, C:0.15, G:0.13, T:0.30

Warning! 124 characters in sequence are not A, C, G, or T


Found at i:787 original size:19 final size:19

Alignment explanation


    Indices: 759--869  Score: 159
    Period size: 19  Copynumber: 5.8  Consensus size: 19

        749 AATTTTTGAG

                 *        *    
        759 GATATACAATCTTATATAT
          1 GATATGCAATCTTAGATAT

                       *       
        778 GATATGCAATCGTAGATAT
          1 GATATGCAATCTTAGATAT

                               
        797 GATATGCAATCTTAGATAT
          1 GATATGCAATCTTAGATAT

                               
        816 GATATGCAATCTTAGATAT
          1 GATATGCAATCTTAGATAT

               * **      *     
        835 GATGTATAATCTTTGATAT
          1 GATATGCAATCTTAGATAT

                            
        854 GATATGCAATCTTAGA
          1 GATATGCAATCTTAGA

        870 AGATATGATT


Statistics
Matches: 80,  Mismatches: 12, Indels: 0
        0.87            0.13        0.00

Matches are distributed among these distances:
  19   80  1.00

ACGTcount: A:0.37, C:0.10, G:0.15, T:0.38


Consensus pattern (19 bp):   
GATATGCAATCTTAGATAT

Done.