Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold3683

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 412

Length: 688
ACGTcount: A:0.36, C:0.15, G:0.11, T:0.38


Found at i:268 original size:4 final size:4

Alignment explanation


    Indices: 259--289  Score: 62
    Period size: 4  Copynumber: 7.8  Consensus size: 4

        249 TCTCACATAT

                                                  
        259 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTT
          1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTT

        290 GTTTTATCTT


Statistics
Matches: 27,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   4   27  1.00

ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77


Consensus pattern (4 bp):   
TTTA

Done.