Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold1862

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 742

Length: 1238
ACGTcount: A:0.22, C:0.13, G:0.16, T:0.13

Warning! 437 characters in sequence are not A, C, G, or T


Found at i:1223 original size:14 final size:14

Alignment explanation


    Indices: 1204--1234  Score: 53
    Period size: 14  Copynumber: 2.2  Consensus size: 14

       1194 TCTCTTGAGC

                    *     
       1204 GAGAAAAAGAAAAA
          1 GAGAAAAACAAAAA

                          
       1218 GAGAAAAACAAAAA
          1 GAGAAAAACAAAAA

               
       1232 GAG
          1 GAG

       1235 TGAA


Statistics
Matches: 16,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  14   16  1.00

ACGTcount: A:0.74, C:0.03, G:0.23, T:0.00


Consensus pattern (14 bp):   
GAGAAAAACAAAAA
Done.