Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold1626

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 878

Length: 1464
ACGTcount: A:0.29, C:0.19, G:0.16, T:0.36


Found at i:266 original size:18 final size:18

Alignment explanation


    Indices: 245--287  Score: 77
    Period size: 18  Copynumber: 2.4  Consensus size: 18

        235 TCTCACTCTT

                              
        245 TTTTTCTTTTTCAATGTC
          1 TTTTTCTTTTTCAATGTC

                           *  
        263 TTTTTCTTTTTCAATTTC
          1 TTTTTCTTTTTCAATGTC

                   
        281 TTTTTCT
          1 TTTTTCT

        288 CTCGTCTCTT


Statistics
Matches: 24,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  18   24  1.00

ACGTcount: A:0.09, C:0.16, G:0.02, T:0.72


Consensus pattern (18 bp):   
TTTTTCTTTTTCAATGTC

Found at i:303 original size:30 final size:30

Alignment explanation


    Indices: 247--305  Score: 73
    Period size: 31  Copynumber: 1.9  Consensus size: 30

        237 TCACTCTTTT

                             *            
        247 TTTCTTTTTCAATGTCTTTTTCTTTTTCAA
          1 TTTCTTTTTCAATGTCTCTTTCTTTTTCAA

                      **          *      
        277 TTTCTTTTTCTCTCGTCTCTTTTTTTTTC
          1 TTTCTTTTTCAAT-GTCTCTTTCTTTTTC

        306 TCTCAACTTT


Statistics
Matches: 24,  Mismatches: 4, Indels: 1
        0.83            0.14        0.03

Matches are distributed among these distances:
  30   11  0.46
  31   13  0.54

ACGTcount: A:0.07, C:0.20, G:0.03, T:0.69


Consensus pattern (30 bp):   
TTTCTTTTTCAATGTCTCTTTCTTTTTCAA
Done.