Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold1073

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2949
ACGTcount: A:0.36, C:0.18, G:0.18, T:0.28


Found at i:2462 original size:12 final size:12

Alignment explanation


    Indices: 2445--2475  Score: 62
    Period size: 12  Copynumber: 2.6  Consensus size: 12

       2435 AATCTGATTT

                        
       2445 AATGTGTAATTC
          1 AATGTGTAATTC

                        
       2457 AATGTGTAATTC
          1 AATGTGTAATTC

                   
       2469 AATGTGT
          1 AATGTGT

       2476 TTAAGGGTGG


Statistics
Matches: 19,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   19  1.00

ACGTcount: A:0.32, C:0.06, G:0.19, T:0.42


Consensus pattern (12 bp):   
AATGTGTAATTC
Done.