Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold2960

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 490

Length: 818
ACGTcount: A:0.32, C:0.19, G:0.17, T:0.32


Found at i:82 original size:34 final size:34

Alignment explanation


    Indices: 4--110  Score: 144
    Period size: 34  Copynumber: 3.1  Consensus size: 34

          1 CAT

                          *                      
          4 ATTAAGAATGCTTTAGG-ATTCGTTTGAGCCCCTCGC
          1 ATTAAGAATGC-TTGGGAATTCGTTTGAG--CCTCGC

              *                               
         40 ATCAAGAATGCTTGGGAATTCGTTTGAGCCTCGC
          1 ATTAAGAATGCTTGGGAATTCGTTTGAGCCTCGC

               *          *                   
         74 ATTTAGAATGCTTGAGAATTCGTTTGAGCCTCGC
          1 ATTAAGAATGCTTGGGAATTCGTTTGAGCCTCGC

               
        108 ATT
          1 ATT

        111 GAGTTTCTTT


Statistics
Matches: 65,  Mismatches: 5, Indels: 4
        0.88            0.07        0.05

Matches are distributed among these distances:
  34   40  0.62
  35    4  0.06
  36   21  0.32

ACGTcount: A:0.23, C:0.20, G:0.23, T:0.34


Consensus pattern (34 bp):   
ATTAAGAATGCTTGGGAATTCGTTTGAGCCTCGC
Done.