Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold661

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 12594
ACGTcount: A:0.34, C:0.16, G:0.14, T:0.36


Found at i:8016 original size:13 final size:13

Alignment explanation


    Indices: 7998--8022  Score: 50
    Period size: 13  Copynumber: 1.9  Consensus size: 13

       7988 CAACCCAAAG

                         
       7998 TTTTTATTTTTAT
          1 TTTTTATTTTTAT

                        
       8011 TTTTTATTTTTA
          1 TTTTTATTTTTA

       8023 ATTATCCATT


Statistics
Matches: 12,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   12  1.00

ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84


Consensus pattern (13 bp):   
TTTTTATTTTTAT

Found at i:11783 original size:22 final size:21

Alignment explanation


    Indices: 11739--11780  Score: 57
    Period size: 21  Copynumber: 1.9  Consensus size: 21

      11729 AAAAATATAA

                        *        
      11739 AAAAATTTTAATGATTTAAAT
          1 AAAAATTTTAATAATTTAAAT

                                 
      11760 AAAAATTTTCAAATAATTTAA
          1 AAAAATTTT--AATAATTTAA

      11781 TAACTATTTT


Statistics
Matches: 18,  Mismatches: 1, Indels: 2
        0.86            0.05        0.10

Matches are distributed among these distances:
  21    9  0.50
  23    9  0.50

ACGTcount: A:0.55, C:0.02, G:0.02, T:0.40


Consensus pattern (21 bp):   
AAAAATTTTAATAATTTAAAT
Done.