Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold3621

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 425

Length: 709
ACGTcount: A:0.36, C:0.03, G:0.20, T:0.41


Found at i:349 original size:20 final size:21

Alignment explanation


    Indices: 308--351  Score: 63
    Period size: 20  Copynumber: 2.1  Consensus size: 21

        298 TATCATTATA

                     *           
        308 GTTTAGGGTTTAATAAATATG
          1 GTTTAGGGTATAATAAATATG

                           *     
        329 GTTTAGGGTAT-ATATATATG
          1 GTTTAGGGTATAATAAATATG

               
        349 GTT
          1 GTT

        352 AATTTAAGAT


Statistics
Matches: 21,  Mismatches: 2, Indels: 1
        0.88            0.08        0.04

Matches are distributed among these distances:
  20   11  0.52
  21   10  0.48

ACGTcount: A:0.30, C:0.00, G:0.25, T:0.45


Consensus pattern (21 bp):   
GTTTAGGGTATAATAAATATG
Done.