Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold1259

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2245
ACGTcount: A:0.26, C:0.13, G:0.17, T:0.20

Warning! 552 characters in sequence are not A, C, G, or T


Found at i:161 original size:10 final size:11

Alignment explanation


    Indices: 141--174  Score: 50
    Period size: 11  Copynumber: 3.1  Consensus size: 11

        131 GTAAGAAGAT

                       
        141 TTTGAAAAAAA
          1 TTTGAAAAAAA

                       
        152 TTTGAAAAAAA
          1 TTTGAAAAAAA

            * *        
        163 ATCGAAAAAAA
          1 TTTGAAAAAAA

             
        174 T
          1 T

        175 CAAAGAAAAA


Statistics
Matches: 20,  Mismatches: 3, Indels: 0
        0.87            0.13        0.00

Matches are distributed among these distances:
  11   20  1.00

ACGTcount: A:0.65, C:0.03, G:0.09, T:0.24


Consensus pattern (11 bp):   
TTTGAAAAAAA
Done.