Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold2369

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 583

Length: 972
ACGTcount: A:0.36, C:0.18, G:0.09, T:0.36


Found at i:576 original size:15 final size:15

Alignment explanation


    Indices: 539--576  Score: 60
    Period size: 14  Copynumber: 2.5  Consensus size: 15

        529 GACACCTTTG

                            
        539 TTTATTTTATTTTTAC
          1 TTTA-TTTATTTTTAC

                           
        555 -TTATTTATTTTTAC
          1 TTTATTTATTTTTAC

                    
        569 TTTATTTA
          1 TTTATTTA

        577 ATTACCATAT


Statistics
Matches: 21,  Mismatches: 0, Indels: 3
        0.88            0.00        0.12

Matches are distributed among these distances:
  14   11  0.52
  15   10  0.48

ACGTcount: A:0.21, C:0.05, G:0.00, T:0.74


Consensus pattern (15 bp):   
TTTATTTATTTTTAC
Done.