Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold928

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4158
ACGTcount: A:0.33, C:0.13, G:0.14, T:0.40


Found at i:848 original size:24 final size:24

Alignment explanation


    Indices: 804--849  Score: 58
    Period size: 24  Copynumber: 1.9  Consensus size: 24

        794 TAGCATTATT

                  *      *          
        804 TATTATTATATTATTTACTATCAC
          1 TATTATCATATTACTTACTATCAC

                                   
        828 TATTATCATCATTACTT-CTATC
          1 TATTATCAT-ATTACTTACTATC

        850 TTCATACACG


Statistics
Matches: 19,  Mismatches: 2, Indels: 2
        0.83            0.09        0.09

Matches are distributed among these distances:
  24   13  0.68
  25    6  0.32

ACGTcount: A:0.30, C:0.17, G:0.00, T:0.52


Consensus pattern (24 bp):   
TATTATCATATTACTTACTATCAC

Found at i:926 original size:2 final size:2

Alignment explanation


    Indices: 917--945  Score: 51
    Period size: 2  Copynumber: 15.0  Consensus size: 2

        907 ATAGTTTTTT

                                                        
        917 TA TA -A TA TA TA TA TA TA TA TA TA TA TA TA
          1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA

        946 ATGCATTTTA


Statistics
Matches: 26,  Mismatches: 0, Indels: 2
        0.93            0.00        0.07

Matches are distributed among these distances:
   1    1  0.04
   2   25  0.96

ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48


Consensus pattern (2 bp):   
TA

Done.