Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold2630

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 535

Length: 893
ACGTcount: A:0.35, C:0.17, G:0.13, T:0.35


Found at i:124 original size:23 final size:24

Alignment explanation


    Indices: 81--126  Score: 67
    Period size: 25  Copynumber: 1.9  Consensus size: 24

         71 TAAAGATGAT

                                     
         81 TATATATAAAATTTTAATAAATAAA
          1 TATATATAAAA-TTTAATAAATAAA

                           *      
        106 TATATATAAAA-TTATTAAATA
          1 TATATATAAAATTTAATAAATA

        127 TTAAATTAAA


Statistics
Matches: 20,  Mismatches: 1, Indels: 2
        0.87            0.04        0.09

Matches are distributed among these distances:
  23    9  0.45
  25   11  0.55

ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41


Consensus pattern (24 bp):   
TATATATAAAATTTAATAAATAAA
Done.