Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: scaffold127
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 3416254
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 147187 characters in sequence are not A, C, G, or T
File 6 of 10
Found at i:1755230 original size:58 final size:58
Alignment explanation
Indices: 1755109--1755235 Score: 166
Period size: 58 Copynumber: 2.2 Consensus size: 58
1755099 GATTTTCCAA
* * * **
1755109 AAAGGCATTCTTTTCTTTCAGAACTTGCCACGAAGGCTTTCCTTCAGATGTTTGCCAC
1 AAAGGCATCCTCTTCTTTCAGAACTCGCCACGAAGGCTTTCCTTCAGATGTTCACCAC
* *
1755167 AAAGGCATCCTCTTCTTTCAGTACTCGCCACGAAGGCTTTCCTTCATA-GATTCACCAC
1 AAAGGCATCCTCTTCTTTCAGAACTCGCCACGAAGGCTTTCCTTCAGATG-TTCACCAC
*
1755225 CAAGGCATCCT
1 AAAGGCATCCT
1755236 TTTTTGACTT
Statistics
Matches: 60, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
57 1 0.02
58 59 0.98
ACGTcount: A:0.24, C:0.30, G:0.16, T:0.31
Consensus pattern (58 bp):
AAAGGCATCCTCTTCTTTCAGAACTCGCCACGAAGGCTTTCCTTCAGATGTTCACCAC
Found at i:1755466 original size:50 final size:50
Alignment explanation
Indices: 1755348--1755491 Score: 128
Period size: 50 Copynumber: 2.9 Consensus size: 50
1755338 CATTTAACTA
* * * * *
1755348 TTTCCATATGATGCCATAACCCACCAATTATGGTCTTATACGATATGGTG
1 TTTCCATATGATGCCATAGCCCACCAAGTAGGGTCTTACACGATATGGTC
* * * * * * *
1755398 TTTCCAAATAACGCCATAGCCCACTAGGTAGGGTCTTACATGATCTGGTC
1 TTTCCATATGATGCCATAGCCCACCAAGTAGGGTCTTACACGATATGGTC
* * * *
1755448 TTTCCATATGATGTCATAGCCC-CCTAACTACGGTTTTACACGAT
1 TTTCCATATGATGCCATAGCCCACC-AAGTAGGGTCTTACACGAT
1755492 GTGATCCTTT
Statistics
Matches: 71, Mismatches: 22, Indels: 2
0.75 0.23 0.02
Matches are distributed among these distances:
49 1 0.01
50 70 0.99
ACGTcount: A:0.26, C:0.25, G:0.17, T:0.32
Consensus pattern (50 bp):
TTTCCATATGATGCCATAGCCCACCAAGTAGGGTCTTACACGATATGGTC
Found at i:1756673 original size:17 final size:17
Alignment explanation
Indices: 1756651--1756683 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
1756641 AGTTGACACA
1756651 TGAATTAAATTAATTTT
1 TGAATTAAATTAATTTT
*
1756668 TGAATTAATTTAATTT
1 TGAATTAAATTAATTT
1756684 GATAGTTAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.39, C:0.00, G:0.06, T:0.55
Consensus pattern (17 bp):
TGAATTAAATTAATTTT
Found at i:1761609 original size:15 final size:15
Alignment explanation
Indices: 1761591--1761620 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
1761581 TTTTGAAAAA
1761591 CAAAATAAATTAAAT
1 CAAAATAAATTAAAT
*
1761606 CAAATTAAATTAAAT
1 CAAAATAAATTAAAT
1761621 AATATCTCTC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.63, C:0.07, G:0.00, T:0.30
Consensus pattern (15 bp):
CAAAATAAATTAAAT
Found at i:1771221 original size:137 final size:138
Alignment explanation
Indices: 1771057--1771331 Score: 437
Period size: 138 Copynumber: 2.0 Consensus size: 138
1771047 TATTAATAAA
*
1771057 AATTGTATATATTTTACCGAATTTATTAATATAAACAATTATAGCAATTAATTTCGGTT-AAAAT
1 AATTGTATATATTTTACCAAATTTATTAATATAAACAATTATAGCAATTAATTTC-GTTCAAAAT
**
1771121 ATAAAA-ACATGGAAATTAATATTATTTTGGAAAGAATATAATTAATATATGAATTTGATTCATA
65 ATAAAAGACATGGAAATTAATATTATTTTAAAAAGAATATAATTAATATATGAATTTGATTCATA
1771185 CAAAATATT
130 CAAAATATT
* * **
1771194 AATTGTATATATTTTACTAAATTTATTAATATAAACAGTTATATTAATTAATTTCGTTCAAAATA
1 AATTGTATATATTTTACCAAATTTATTAATATAAACAATTATAGCAATTAATTTCGTTCAAAATA
* * *
1771259 TAAAAGACATGGAAATTAATATTCTTTTAAAAAGAGTATAATTAGTATATGAATTTGATTCATAC
66 TAAAAGACATGGAAATTAATATTATTTTAAAAAGAATATAATTAATATATGAATTTGATTCATAC
1771324 AAAATATT
131 AAAATATT
1771332 GTTGTATTCA
Statistics
Matches: 126, Mismatches: 10, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
136 3 0.02
137 61 0.48
138 62 0.49
ACGTcount: A:0.45, C:0.06, G:0.08, T:0.40
Consensus pattern (138 bp):
AATTGTATATATTTTACCAAATTTATTAATATAAACAATTATAGCAATTAATTTCGTTCAAAATA
TAAAAGACATGGAAATTAATATTATTTTAAAAAGAATATAATTAATATATGAATTTGATTCATAC
AAAATATT
Found at i:1771359 original size:137 final size:137
Alignment explanation
Indices: 1771076--1771360 Score: 398
Period size: 137 Copynumber: 2.1 Consensus size: 137
1771066 TATTTTACCG
1771076 AATTTATTAATATAAACAATTATAGCAATTAATTTCGGTTAAAATATAAAAACATGGAAATTAAT
1 AATTTATTAATATAAACAATTATAGCAATTAATTTCGGTTAAAATATAAAAACATGGAAATTAAT
**
1771141 ATTATTTTGGAAAGAATATAATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATAT
66 ATTATTTTAAAAAGAATATAATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATAT
* * *
1771206 TTTACTA
131 ATAAATA
* **
1771213 AATTTATTAATATAAACAGTTATATTAATTAATTTC-GTTCAAAATATAAAAGACATGGAAATTA
1 AATTTATTAATATAAACAATTATAGCAATTAATTTCGGTT-AAAATATAAAA-ACATGGAAATTA
* * * *
1771277 ATATTCTTTTAAAAAGAGTATAATTAGTATATGAATTTGATTCATACAAAATATT-GTTGTAT-T
64 ATATTATTTTAAAAAGAATATAATTAATATATGAATTTGATTCATACAAAATATTAATTGTATAT
1771340 CATATAAAT-
129 -ATATAAATA
1771349 AATTATATTAAT
1 AATT-TATTAAT
1771361 TAATTTCGGT
Statistics
Matches: 132, Mismatches: 12, Indels: 8
0.87 0.08 0.05
Matches are distributed among these distances:
136 8 0.06
137 62 0.47
138 62 0.47
ACGTcount: A:0.46, C:0.05, G:0.08, T:0.41
Consensus pattern (137 bp):
AATTTATTAATATAAACAATTATAGCAATTAATTTCGGTTAAAATATAAAAACATGGAAATTAAT
ATTATTTTAAAAAGAATATAATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATAT
ATAAATA
Found at i:1778270 original size:64 final size:64
Alignment explanation
Indices: 1778169--1778296 Score: 220
Period size: 64 Copynumber: 2.0 Consensus size: 64
1778159 CGGAAATTGG
* *
1778169 AAACTCAATCTCAATCAGTTAATCTGAATTACTTACAACAGTCAATTCCCAAAACTATCGACAA
1 AAACTCAACCTCAATCACTTAATCTGAATTACTTACAACAGTCAATTCCCAAAACTATCGACAA
* *
1778233 AAACTCAACCTTAGTCACTTAATCTGAATTACTTACAACAGTCAATTCCCAAAACTATCGACAA
1 AAACTCAACCTCAATCACTTAATCTGAATTACTTACAACAGTCAATTCCCAAAACTATCGACAA
1778297 CCTTACCTCG
Statistics
Matches: 60, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
64 60 1.00
ACGTcount: A:0.41, C:0.26, G:0.06, T:0.27
Consensus pattern (64 bp):
AAACTCAACCTCAATCACTTAATCTGAATTACTTACAACAGTCAATTCCCAAAACTATCGACAA
Found at i:1780153 original size:17 final size:17
Alignment explanation
Indices: 1780131--1780163 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
1780121 AGTTGTTACA
1780131 TGAATTGAA-TTAATTTT
1 TGAATT-AATTTAATTTT
1780148 TGAATTAATTTAATTT
1 TGAATTAATTTAATTT
1780164 GATAGTTAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 2 0.13
17 13 0.87
ACGTcount: A:0.36, C:0.00, G:0.09, T:0.55
Consensus pattern (17 bp):
TGAATTAATTTAATTTT
Found at i:1780412 original size:139 final size:138
Alignment explanation
Indices: 1780229--1780547 Score: 503
Period size: 139 Copynumber: 2.3 Consensus size: 138
1780219 ACATAGATAA
* * *
1780229 AATTAATATATGATTTTGAGTCATACAAAATATTAATTGTATATATTTTACTGAATTTATTAATA
1 AATTAATATATGAATTTGATTCATAAAAAATATTAATTGTATATATTTTACTGAATTTATTAATA
* *
1780294 TAAGCAGATATATTAAATAATTTCGGTCAAAATATAAAAGACATAGAAATTAATATTCTTTTGGA
66 TAAACAGATATATTAAATAATTTCGGTCAAAATATAAAAGACATAGAAATTAATATTCGTTTGGA
1780359 AAGAATAT
131 AAGAATAT
* *
1780367 AATTAATATATGAATCTGATTCATAAAAAAATGTTAATTGTATATATTTTACTGAATTTATTAAT
1 AATTAATATATGAATTTGATTCAT-AAAAAATATTAATTGTATATATTTTACTGAATTTATTAAT
* * *
1780432 ATAAACAGTTATATTAATTAATTTCGGTCAAAATATAAAAGACATGGAAATTAATATTCGTTTGG
65 ATAAACAGATATATTAAATAATTTCGGTCAAAATATAAAAGACATAGAAATTAATATTCGTTTGG
* *
1780497 GAAGAATGT
130 AAAGAATAT
* *
1780506 AATTAATCTGTGAATTTGATTCATAAAAAATATTAATTGTAT
1 AATTAATATATGAATTTGATTCATAAAAAATATTAATTGTAT
1780548 TTATAAAAAT
Statistics
Matches: 164, Mismatches: 16, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
138 38 0.23
139 126 0.77
ACGTcount: A:0.44, C:0.06, G:0.11, T:0.39
Consensus pattern (138 bp):
AATTAATATATGAATTTGATTCATAAAAAATATTAATTGTATATATTTTACTGAATTTATTAATA
TAAACAGATATATTAAATAATTTCGGTCAAAATATAAAAGACATAGAAATTAATATTCGTTTGGA
AAGAATAT
Found at i:1796630 original size:22 final size:22
Alignment explanation
Indices: 1796601--1796705 Score: 92
Period size: 20 Copynumber: 5.0 Consensus size: 22
1796591 AAATATTTGC
1796601 AGATAAACTACCAGAAATATGT
1 AGATAAACTACCAGAAATATGT
** * *
1796623 TTATAAACCACCAG--ATATGC
1 AGATAAACTACCAGAAATATGT
1796643 AGATAAACTACCAGAAATATGT
1 AGATAAACTACCAGAAATATGT
* * * *
1796665 AGACAAGCTACTAG-AAT-TGC
1 AGATAAACTACCAGAAATATGT
* *
1796685 AGATAAACTACTAGAATTATG
1 AGATAAACTACCAGAAATATG
1796706 CGGACAAGCC
Statistics
Matches: 64, Mismatches: 15, Indels: 8
0.74 0.17 0.09
Matches are distributed among these distances:
20 30 0.47
21 5 0.08
22 29 0.45
ACGTcount: A:0.46, C:0.16, G:0.14, T:0.24
Consensus pattern (22 bp):
AGATAAACTACCAGAAATATGT
Found at i:1796686 original size:42 final size:41
Alignment explanation
Indices: 1796597--1796735 Score: 143
Period size: 42 Copynumber: 3.3 Consensus size: 41
1796587 CCACAAATAT
** * * *
1796597 TTGCAGATAAACTACCAGAAATATGTTTATAAACCACCAGA
1 TTGCAGATAAACTACCAGAAATATGTAGACAAGCCACTAGA
*
1796638 TATGCAGATAAACTACCAGAAATATGTAGACAAGCTACTAGAA
1 T-TGCAGATAAACTACCAGAAATATGTAGACAAGCCACTAG-A
* * **
1796681 TTGCAGATAAACTACTAGAATTATGCGGACAAGCCACTAGTA
1 TTGCAGATAAACTACCAGAAATATGTAGACAAGCCACTAG-A
* *
1796723 GTGCAAATAAACT
1 TTGCAGATAAACT
1796736 GCTAGAATTT
Statistics
Matches: 82, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
41 1 0.01
42 79 0.96
43 2 0.02
ACGTcount: A:0.43, C:0.18, G:0.16, T:0.23
Consensus pattern (41 bp):
TTGCAGATAAACTACCAGAAATATGTAGACAAGCCACTAGA
Found at i:1801737 original size:2 final size:2
Alignment explanation
Indices: 1801727--1801758 Score: 57
Period size: 2 Copynumber: 16.5 Consensus size: 2
1801717 TAATTGTGTG
1801727 TA TA T- TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1801759 CAATGATTTT
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 28 0.97
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (2 bp):
TA
Found at i:1801818 original size:56 final size:57
Alignment explanation
Indices: 1801736--1801849 Score: 221
Period size: 56 Copynumber: 2.0 Consensus size: 57
1801726 GTATATTATA
1801736 TATATATATATATATATATATATCAATGATTTTGAAGATTAATGCATGATTATAGTT
1 TATATATATATATATATATATATCAATGATTTTGAAGATTAATGCATGATTATAGTT
1801793 TATATATATA-ATATATATATATCAATGATTTTGAAGATTAATGCATGATTATAGTT
1 TATATATATATATATATATATATCAATGATTTTGAAGATTAATGCATGATTATAGTT
1801849 T
1 T
1801850 GTGTGAATAT
Statistics
Matches: 57, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
56 47 0.82
57 10 0.18
ACGTcount: A:0.40, C:0.04, G:0.11, T:0.46
Consensus pattern (57 bp):
TATATATATATATATATATATATCAATGATTTTGAAGATTAATGCATGATTATAGTT
Found at i:1811359 original size:44 final size:44
Alignment explanation
Indices: 1811296--1811790 Score: 414
Period size: 44 Copynumber: 11.2 Consensus size: 44
1811286 NNNNNNNNNG
* * * *
1811296 CTGCTATTTTCGATCTACTTCATGCCAATACATGAAGACAAGAT
1 CTGCTATCTTCGATCTACTTCACGCCAATATAGGAAGACAAGAT
* * * * *
1811340 CTGCTTTCTTCGATCTACTTCACCACCAGTATGGGAAGATAAGAT
1 CTGCTATCTTCGATCTACTTCA-CGCCAATATAGGAAGACAAGAT
* * * *
1811385 CTGC-ATCTTCGATCCACTTC-CTACCAATATAGGAAGACAATAC
1 CTGCTATCTTCGATCTACTTCAC-GCCAATATAGGAAGACAAGAT
* * * * *
1811428 CTACTATCTTTGATCTACTTCACGCCAATACATGAAGATAAGAT
1 CTGCTATCTTCGATCTACTTCACGCCAATATAGGAAGACAAGAT
* * * * * * *
1811472 CTGATTTCTTTGATCTACTTCGCCACCAGTATGGGAAGACAAGAT
1 CTGCTATCTTCGATCTACTTC-ACGCCAATATAGGAAGACAAGAT
* * * * *
1811517 CTAC-ATCTTCGATCCACTTCGCTACCAATATAGGAAGACAGGAT
1 CTGCTATCTTCGATCTACTTCAC-GCCAATATAGGAAGACAAGAT
* *
1811561 CTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGAT
1 CTGCTATCTTCGATCTACTTCACGCCAATATAGGAAGACAAGAT
* * **
1811605 CTGC-ATCTTCGATCCACTTC-CTACCAATATAGGAAGACGGGA-
1 CTGCTATCTTCGATCTACTTCAC-GCCAATATAGGAAGACAAGAT
* *
1811647 CATGCTATCTTCGATCTACTTCACGCCAATAAATGAAGACAAGAT
1 C-TGCTATCTTCGATCTACTTCACGCCAATATAGGAAGACAAGAT
* * * * *
1811692 CTGCT-TCCTTCGATATACTCCGCCACCAATATGGGAAGACAAGAT
1 CTGCTAT-CTTCGATCTACTTC-ACGCCAATATAGGAAGACAAGAT
* * * * *
1811737 CTGC-ATCTTCGATCCACTTC-CTACCAATATAGTAAGACAGGAC
1 CTGCTATCTTCGATCTACTTCAC-GCCAATATAGGAAGACAAGAT
1811780 CTGCTATCTTC
1 CTGCTATCTTC
1811791 ACTGATCTGC
Statistics
Matches: 357, Mismatches: 77, Indels: 34
0.76 0.16 0.07
Matches are distributed among these distances:
42 4 0.01
43 75 0.21
44 199 0.56
45 79 0.22
ACGTcount: A:0.30, C:0.26, G:0.15, T:0.28
Consensus pattern (44 bp):
CTGCTATCTTCGATCTACTTCACGCCAATATAGGAAGACAAGAT
Found at i:1811693 original size:220 final size:220
Alignment explanation
Indices: 1811304--1811790 Score: 688
Period size: 220 Copynumber: 2.2 Consensus size: 220
1811294 NGCTGCTATT
* * * * * * * *
1811304 TTCGATCTACTTCATGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCACCACCAG
1 TTCGATCCACTTCCTACCAATATAGGAAGACAGGATCTGCTATCTTCGATCTACTTCACCACCAA
** * * *
1811369 TATGGGAAGATAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGACAATACCTACTA
66 TACAGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGACAAGACATACTA
* * * * * * *
1811434 TCTTTGATCTACTTCACGCCAATACATGAAGATAAGATCTGATTTCTTTGATCTACTTCGCCACC
131 TCTTCGATCTACTTCACGCCAATAAATGAAGACAAGATCTGATTCCTTCGATATACTCCGCCACC
*
1811499 AGTATGGGAAGACAAGATCTACATC
196 AATATGGGAAGACAAGATCTACATC
*
1811524 TTCGATCCACTTCGCTACCAATATAGGAAGACAGGATCTGCTATCTTCGATCTACTTCA-CGCCA
1 TTCGATCCACTTC-CTACCAATATAGGAAGACAGGATCTGCTATCTTCGATCTACTTCACCACCA
* ** *
1811588 ATACATGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGACGGGACATGCT
65 ATACAGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGACAAGACATACT
*
1811653 ATCTTCGATCTACTTCACGCCAATAAATGAAGACAAGATCTGCTTCCTTCGATATACTCCGCCAC
130 ATCTTCGATCTACTTCACGCCAATAAATGAAGACAAGATCTGATTCCTTCGATATACTCCGCCAC
*
1811718 CAATATGGGAAGACAAGATCTGCATC
195 CAATATGGGAAGACAAGATCTACATC
* *
1811744 TTCGATCCACTTCCTACCAATATAGTAAGACAGGACCTGCTATCTTC
1 TTCGATCCACTTCCTACCAATATAGGAAGACAGGATCTGCTATCTTC
1811791 ACTGATCTGC
Statistics
Matches: 236, Mismatches: 30, Indels: 3
0.88 0.11 0.01
Matches are distributed among these distances:
219 32 0.14
220 165 0.70
221 39 0.17
ACGTcount: A:0.31, C:0.26, G:0.15, T:0.28
Consensus pattern (220 bp):
TTCGATCCACTTCCTACCAATATAGGAAGACAGGATCTGCTATCTTCGATCTACTTCACCACCAA
TACAGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGACAAGACATACTA
TCTTCGATCTACTTCACGCCAATAAATGAAGACAAGATCTGATTCCTTCGATATACTCCGCCACC
AATATGGGAAGACAAGATCTACATC
Found at i:1813074 original size:6 final size:6
Alignment explanation
Indices: 1813031--1813059 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
1813021 GGCCTCTCCA
1813031 TTTTTC TTTTTC TTTTTC TTTTTC TTTTT
1 TTTTTC TTTTTC TTTTTC TTTTTC TTTTT
1813060 ATCACTTTTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.00, C:0.14, G:0.00, T:0.86
Consensus pattern (6 bp):
TTTTTC
Found at i:1819257 original size:23 final size:22
Alignment explanation
Indices: 1819231--1819275 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
1819221 TAATTAAATC
1819231 TCTAAGATTACAAAATCATATCT
1 TCTAAGATTAC-AAATCATATCT
* *
1819254 TCTAAGATTGCATATCATATCT
1 TCTAAGATTACAAATCATATCT
1819276 AAGATTATAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 10 0.50
23 10 0.50
ACGTcount: A:0.38, C:0.18, G:0.07, T:0.38
Consensus pattern (22 bp):
TCTAAGATTACAAATCATATCT
Found at i:1819301 original size:38 final size:38
Alignment explanation
Indices: 1819254--1820105 Score: 1695
Period size: 38 Copynumber: 22.4 Consensus size: 38
1819244 AATCATATCT
1819254 TCTAAGATTGCATATCATATCTAAGATTATATATCATA
1 TCTAAGATTGCATATCATATCTAAGATTATATATCATA
1819292 TCTAAGATTGCATATCATATCTAAGATTATATATCATA
1 TCTAAGATTGCATATCATATCTAAGATTATATATCATA
1819330 TCTAAGATTGCATATCATATCTAAGATTATATATCATA
1 TCTAAGATTGCATATCATATCTAAGATTATATATCATA
1819368 TCTAAGATTGCATATCATATCTAAGATTATATATCATA
1 TCTAAGATTGCATATCATATCTAAGATTATATATCATA
1819406 TCTAAGATTGCATATCATATCTAAGATTATATATCATA
1 TCTAAGATTGCATATCATATCTAAGATTATATATCATA
1819444 TCTAAGATTGCATATCATATCTAAGATTATATATCATA
1 TCTAAGATTGCATATCATATCTAAGATTATATATCATA
1819482 TCTAAGATTGCATATCATATCTAAGATTATATATCATA
1 TCTAAGATTGCATATCATATCTAAGATTATATATCATA
1819520 TCTAAGATTGCATATCATATCTAAGATTATATATCATA
1 TCTAAGATTGCATATCATATCTAAGATTATATATCATA
1819558 TCTAAGATTGCATATCATATCTAAGATTATATATCATA
1 TCTAAGATTGCATATCATATCTAAGATTATATATCATA
1819596 TCTAAGATTGCATATCATATCTAAGATTATATATCATA
1 TCTAAGATTGCATATCATATCTAAGATTATATATCATA
1819634 TCTAAGATTGCATATCATATCTAAGATTATATATCATA
1 TCTAAGATTGCATATCATATCTAAGATTATATATCATA
1819672 TCTAAGATTGCATATCATATCTAAGATTATATATCATA
1 TCTAAGATTGCATATCATATCTAAGATTATATATCATA
1819710 TCTAAGATTGCATATCATATCTAAGATTATATATCATA
1 TCTAAGATTGCATATCATATCTAAGATTATATATCATA
1819748 TCTAAGATTGCATATCATATCTAAGATTATATATCATA
1 TCTAAGATTGCATATCATATCTAAGATTATATATCATA
1819786 TCTAAGATTGCATATCATATCTAAGATTATATATCATA
1 TCTAAGATTGCATATCATATCTAAGATTATATATCATA
1819824 TCTAAGATTGCATATCATATCTAAGATTATATATCATA
1 TCTAAGATTGCATATCATATCTAAGATTATATATCATA
1819862 TCTAAGATTGCATATCATATCTAAGATTATATATCATA
1 TCTAAGATTGCATATCATATCTAAGATTATATATCATA
1819900 TCTAAGATTGCATATCATATCTAAGATTATATATCATA
1 TCTAAGATTGCATATCATATCTAAGATTATATATCATA
1819938 TCTAAGATTGCATATCATATCTAAGATTATATATCATA
1 TCTAAGATTGCATATCATATCTAAGATTATATATCATA
1819976 TCTAAGATTGCATATCATATCTAAGATTATATATCATA
1 TCTAAGATTGCATATCATATCTAAGATTATATATCATA
1820014 TCTAAGATTGCATATCATATCTAAGATTATATATCATA
1 TCTAAGATTGCATATCATATCTAAGATTATATATCATA
*
1820052 TCTAAGATTGCATATCATATCTAAGATTATATATTATA
1 TCTAAGATTGCATATCATATCTAAGATTATATATCATA
1820090 TCTAAGATTGCATATC
1 TCTAAGATTGCATATC
1820106 CCTAAAAATT
Statistics
Matches: 813, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 813 1.00
ACGTcount: A:0.39, C:0.13, G:0.08, T:0.40
Consensus pattern (38 bp):
TCTAAGATTGCATATCATATCTAAGATTATATATCATA
Found at i:1822577 original size:13 final size:14
Alignment explanation
Indices: 1822547--1822579 Score: 50
Period size: 13 Copynumber: 2.4 Consensus size: 14
1822537 AATTAAACAT
*
1822547 AACTTAATTAACTT
1 AACTTAATTAACTA
1822561 AACTTAA-TAACTA
1 AACTTAATTAACTA
1822574 AACTTA
1 AACTTA
1822580 TTTAGTGGAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 11 0.61
14 7 0.39
ACGTcount: A:0.48, C:0.15, G:0.00, T:0.36
Consensus pattern (14 bp):
AACTTAATTAACTA
Found at i:1824057 original size:12 final size:12
Alignment explanation
Indices: 1824040--1824086 Score: 76
Period size: 12 Copynumber: 3.9 Consensus size: 12
1824030 TTCTACCTTA
1824040 AACCACGTACTT
1 AACCACGTACTT
1824052 AACCACGTACTT
1 AACCACGTACTT
**
1824064 AACCAAATACTT
1 AACCACGTACTT
1824076 AACCACGTACT
1 AACCACGTACT
1824087 CGGTTATCTC
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 31 1.00
ACGTcount: A:0.38, C:0.32, G:0.06, T:0.23
Consensus pattern (12 bp):
AACCACGTACTT
Found at i:1826844 original size:4 final size:4
Alignment explanation
Indices: 1826837--1826870 Score: 59
Period size: 4 Copynumber: 8.5 Consensus size: 4
1826827 CAAACTTTAT
*
1826837 TTAA TTAA TTAA TTAA TTAA TTAA CTAA TTAA TT
1 TTAA TTAA TTAA TTAA TTAA TTAA TTAA TTAA TT
1826871 TCCAAGTCAT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
4 28 1.00
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (4 bp):
TTAA
Found at i:1836035 original size:11 final size:11
Alignment explanation
Indices: 1836021--1836061 Score: 50
Period size: 11 Copynumber: 3.7 Consensus size: 11
1836011 AAAGTGCAGA
1836021 AAAACTAAGAG
1 AAAACTAAGAG
1836032 AAAACCT-AGAG
1 AAAA-CTAAGAG
1836043 AAAACTAA-AG
1 AAAACTAAGAG
1836053 ATAAACTAA
1 A-AAACTAA
1836062 ACAAATGTGG
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
10 5 0.19
11 20 0.74
12 2 0.07
ACGTcount: A:0.63, C:0.12, G:0.12, T:0.12
Consensus pattern (11 bp):
AAAACTAAGAG
Found at i:1838544 original size:17 final size:18
Alignment explanation
Indices: 1838511--1838544 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
1838501 CCCATGTTGT
1838511 ATGCCCGTGTGGGCCCAC
1 ATGCCCGTGTGGGCCCAC
*
1838529 ATGCTCGTGT-GGCCCA
1 ATGCCCGTGTGGGCCCA
1838545 TTCGGCTCAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.12, C:0.35, G:0.32, T:0.21
Consensus pattern (18 bp):
ATGCCCGTGTGGGCCCAC
Found at i:1841656 original size:51 final size:50
Alignment explanation
Indices: 1841476--1841816 Score: 342
Period size: 51 Copynumber: 6.7 Consensus size: 50
1841466 ACTTTTATCA
* * * * *
1841476 TTCGATACGCGTAGTAGCCTTCACATAGTACTACACACGTGATCAAGTTT
1 TTCGATACACATAGTAGCCTTCACATAGTACTACACAAGTGACCAAATTT
* * * * * *
1841526 TACGATTCACGTAGTAGCCTTCACATAGTTACTACAC-ACTGATCAAGTTT
1 TTCGATACACATAGTAGCCTTCACATAG-TACTACACAAGTGACCAAATTT
* * *
1841576 TACGGTTCACATAGTAGCCTTCACATAGTACTACACAAGTGACCAAATCTT
1 TTCGATACACATAGTAGCCTTCACATAGTACTACACAAGTGACCAAAT-TT
* * * *
1841627 TTCGGTACACATAGTAGCCTTCACTTAGTACTACACATGTGACCATTATTT
1 TTCGATACACATAGTAGCCTTCACATAGTACTACACAAGTGACCA-AATTT
* * * * *
1841678 ATCGATACACGTAGTAGCCTTCACACAGTACTACACACGTGACCAAAGCTT
1 TTCGATACACATAGTAGCCTTCACATAGTACTACACAAGTGACCAAA-TTT
* * * * * *
1841729 CTCGGTACACATTGTAGCCTTCACTTAGTACTACACATGTGACCATTATTT
1 TTCGATACACATAGTAGCCTTCACATAGTACTACACAAGTGACCA-AATTT
* * *
1841780 ATCGATACACGTAGTAGCCTTCACACAGTACTACACA
1 TTCGATACACATAGTAGCCTTCACATAGTACTACACA
1841817 CGTGTTCATC
Statistics
Matches: 247, Mismatches: 38, Indels: 11
0.83 0.13 0.04
Matches are distributed among these distances:
49 8 0.03
50 71 0.29
51 165 0.67
52 3 0.01
ACGTcount: A:0.30, C:0.26, G:0.15, T:0.29
Consensus pattern (50 bp):
TTCGATACACATAGTAGCCTTCACATAGTACTACACAAGTGACCAAATTT
Found at i:1841712 original size:102 final size:102
Alignment explanation
Indices: 1841477--1841820 Score: 462
Period size: 102 Copynumber: 3.4 Consensus size: 102
1841467 CTTTTATCAT
* * * * * * * *
1841477 TCGATACGCGTAGTAGCCTTCACATAGTACTACACACGTGATCAAGT-TTTACGATTCACGTAGT
1 TCGATACACGTAGTAGCCTTCACACAGTACTACACACGTGACCAAATCTTTTCGGTACACATAGT
* * * *
1841541 AGCCTTCACATAGTTACTACACA-CTGATCAAGT-TTTA
66 AGCCTTCACTTAG-TACTACACATGTGA-CCATTATTTA
* * * * *
1841578 -CGGTTCACATAGTAGCCTTCACATAGTACTACACAAGTGACCAAATCTTTTCGGTACACATAGT
1 TCGATACACGTAGTAGCCTTCACACAGTACTACACACGTGACCAAATCTTTTCGGTACACATAGT
1841642 AGCCTTCACTTAGTACTACACATGTGACCATTATTTA
66 AGCCTTCACTTAGTACTACACATGTGACCATTATTTA
* * *
1841679 TCGATACACGTAGTAGCCTTCACACAGTACTACACACGTGACCAAAGCTTCTCGGTACACATTGT
1 TCGATACACGTAGTAGCCTTCACACAGTACTACACACGTGACCAAATCTTTTCGGTACACATAGT
1841744 AGCCTTCACTTAGTACTACACATGTGACCATTATTTA
66 AGCCTTCACTTAGTACTACACATGTGACCATTATTTA
1841781 TCGATACACGTAGTAGCCTTCACACAGTACTACACACGTG
1 TCGATACACGTAGTAGCCTTCACACAGTACTACACACGTG
1841821 TTCATCGATA
Statistics
Matches: 216, Mismatches: 23, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
100 51 0.24
101 32 0.15
102 133 0.62
ACGTcount: A:0.30, C:0.26, G:0.15, T:0.29
Consensus pattern (102 bp):
TCGATACACGTAGTAGCCTTCACACAGTACTACACACGTGACCAAATCTTTTCGGTACACATAGT
AGCCTTCACTTAGTACTACACATGTGACCATTATTTA
Found at i:1841773 original size:153 final size:151
Alignment explanation
Indices: 1841477--1841820 Score: 435
Period size: 153 Copynumber: 2.3 Consensus size: 151
1841467 CTTTTATCAT
* * *
1841477 TCGATACGCGTAGTAGCCTTCACATAGTACTACACACGTGATCAAGTTTTACGATTCACGTAGTA
1 TCGATACACATAGTAGCCTTCACATAGTACTACACACGTGATCAAGTTTTACGATACACGTAGTA
* * * *
1841542 GCCTTCACATAGTTACTACACACTGATCAAGTTTTACGGTTCACATAGTAGCCTTCACATAGTAC
66 GCCTTCACACAGTTACTACACACTGACCAAGTTCTACGGTACACATAGTAGCCTTCACATAGTAC
*
1841607 TACACAAGTGACCA-AATCTTT
131 TACACAAGTGACCATAAT-TTA
* * * * *
1841628 TCGGTACACATAGTAGCCTTCACTTAGTACTACACATGTGA-CCATTATTTATCGATACACGTAG
1 TCGATACACATAGTAGCCTTCACATAGTACTACACACGTGATCAAGT-TTTA-CGATACACGTAG
* *
1841692 TAGCCTTCACACAG-TACTACACACGTGACCAAAGCTTCT-CGGTACACATTGTAGCCTTCACTT
64 TAGCCTTCACACAGTTACTACACAC-TGACC-AAG-TTCTACGGTACACATAGTAGCCTTCACAT
* *
1841755 AGTACTACACATGTGACCATTATTTA
126 AGTACTACACAAGTGACCATAATTTA
* *
1841781 TCGATACACGTAGTAGCCTTCACACAGTACTACACACGTG
1 TCGATACACATAGTAGCCTTCACATAGTACTACACACGTG
1841821 TTCATCGATA
Statistics
Matches: 165, Mismatches: 22, Indels: 10
0.84 0.11 0.05
Matches are distributed among these distances:
150 3 0.02
151 50 0.30
152 28 0.17
153 79 0.48
154 5 0.03
ACGTcount: A:0.30, C:0.26, G:0.15, T:0.29
Consensus pattern (151 bp):
TCGATACACATAGTAGCCTTCACATAGTACTACACACGTGATCAAGTTTTACGATACACGTAGTA
GCCTTCACACAGTTACTACACACTGACCAAGTTCTACGGTACACATAGTAGCCTTCACATAGTAC
TACACAAGTGACCATAATTTA
Found at i:1849454 original size:51 final size:51
Alignment explanation
Indices: 1849217--1849553 Score: 342
Period size: 50 Copynumber: 6.7 Consensus size: 51
1849207 TCATTCGATA
* **
1849217 CACGTAGTAGCCTTCACATAGTACTACACACGTGATCAAGTTTTA-CGGTT
1 CACGTAGTAGCCTTCACATAGTACTACACACGTGACCAAAATTTATCGGTT
* * **
1849267 CACGTAGTAGCCTTCACATAATACTACACACGTGATCAAGTTTTA-CGGTT
1 CACGTAGTAGCCTTCACATAGTACTACACACGTGACCAAAATTTATCGGTT
* *
1849317 CATGTAGTAGCCTTCACATAGTACTACACACGTGACCAAAACTTT-TCGGTA
1 CACGTAGTAGCCTTCACATAGTACTACACACGTGACCAAAA-TTTATCGGTT
* * * * ** *
1849368 CACATAGTAGCCTT-ACTTAGCACTACACATGTGACCATCATTTATCGATT
1 CACGTAGTAGCCTTCACATAGTACTACACACGTGACCAAAATTTATCGGTT
* ** *
1849418 CACGTAGTAGCCTTCACACAGTACTACACACGTGACCAAAGCTTCTCGGTAT
1 CACGTAGTAGCCTTCACATAGTACTACACACGTGACCAAAATTTATCGGT-T
* * * * * ** * * *
1849470 -ACATTGTTGCCTTCACTTAGTACTACACATGTGACCATTATTTATTGATA
1 CACGTAGTAGCCTTCACATAGTACTACACACGTGACCAAAATTTATCGGTT
*
1849520 CACGTAGTAGCCTTCACACAGTACTACACACGTG
1 CACGTAGTAGCCTTCACATAGTACTACACACGTG
1849554 TTCATTGATA
Statistics
Matches: 234, Mismatches: 47, Indels: 11
0.80 0.16 0.04
Matches are distributed among these distances:
49 3 0.01
50 123 0.53
51 107 0.46
52 1 0.00
ACGTcount: A:0.29, C:0.26, G:0.15, T:0.29
Consensus pattern (51 bp):
CACGTAGTAGCCTTCACATAGTACTACACACGTGACCAAAATTTATCGGTT
Found at i:1849536 original size:102 final size:102
Alignment explanation
Indices: 1849211--1849553 Score: 428
Period size: 101 Copynumber: 3.4 Consensus size: 102
1849201 CTTTTATCAT
* * *
1849211 TCGATACACGTAGTAGCCTTCACATAGTACTACACACGTGATC-AAG-TTTTACGGT-TCACGTA
1 TCGATACACGTAGTAGCCTTCACACAGTACTACACACGTGACCAAAGCTTTT-CGGTAT-ACATA
* * * * *
1849273 GTAGCCTTCACATAATACTACACACGTGATCAAGT-TTTA
64 GTAGCCTTCACTTAGTACTACACATGTGA-CCATTATTTA
* * * * * *
1849312 -CGGTTCATGTAGTAGCCTTCACATAGTACTACACACGTGACCAAAACTTTTCGGTACACATAGT
1 TCGATACACGTAGTAGCCTTCACACAGTACTACACACGTGACCAAAGCTTTTCGGTATACATAGT
* *
1849376 AGCCTT-ACTTAGCACTACACATGTGACCATCATTTA
66 AGCCTTCACTTAGTACTACACATGTGACCATTATTTA
* * *
1849412 TCGATTCACGTAGTAGCCTTCACACAGTACTACACACGTGACCAAAGCTTCTCGGTATACATTGT
1 TCGATACACGTAGTAGCCTTCACACAGTACTACACACGTGACCAAAGCTTTTCGGTATACATAGT
*
1849477 TGCCTTCACTTAGTACTACACATGTGACCATTATTTA
66 AGCCTTCACTTAGTACTACACATGTGACCATTATTTA
*
1849514 TTGATACACGTAGTAGCCTTCACACAGTACTACACACGTG
1 TCGATACACGTAGTAGCCTTCACACAGTACTACACACGTG
1849554 TTCATTGATA
Statistics
Matches: 210, Mismatches: 26, Indels: 11
0.85 0.11 0.04
Matches are distributed among these distances:
99 2 0.01
100 58 0.28
101 80 0.38
102 70 0.33
ACGTcount: A:0.29, C:0.26, G:0.15, T:0.29
Consensus pattern (102 bp):
TCGATACACGTAGTAGCCTTCACACAGTACTACACACGTGACCAAAGCTTTTCGGTATACATAGT
AGCCTTCACTTAGTACTACACATGTGACCATTATTTA
Found at i:1856094 original size:50 final size:50
Alignment explanation
Indices: 1856040--1856244 Score: 211
Period size: 50 Copynumber: 4.1 Consensus size: 50
1856030 ATACTTCGCG
* * * *
1856040 ACAAAGGCTTCACAGATAATGCGCCACTAGAGATTTTCACAAGAGTAGCC
1 ACAAAGGCTTCACAGATAATACGCCACTAAAGCTTTTCACAAGATTAGCC
* * *
1856090 ACAAAGGCTTCCCAAATAATACGCCAC-AAAGTCTTTTCACAAGATTAGCG
1 ACAAAGGCTTCACAGATAATACGCCACTAAAG-CTTTTCACAAGATTAGCC
* * *
1856140 ACAAAGGCTTCTA-AGATAATACACCAC-AAGTGTTTTTCACAAGATTAGCC
1 ACAAAGGCTTC-ACAGATAATACGCCACTAA-AGCTTTTCACAAGATTAGCC
** * **
1856190 GTACAGGCTTCTTAGATAATACGCCA-TAAAGGCTTTTCACAAGATTAGCC
1 ACAAAGGCTTCACAGATAATACGCCACTAAA-GCTTTTCACAAGATTAGCC
1856240 ACAAA
1 ACAAA
1856245 AACTTCCAAG
Statistics
Matches: 126, Mismatches: 23, Indels: 12
0.78 0.14 0.07
Matches are distributed among these distances:
49 3 0.02
50 122 0.97
51 1 0.01
ACGTcount: A:0.37, C:0.23, G:0.16, T:0.23
Consensus pattern (50 bp):
ACAAAGGCTTCACAGATAATACGCCACTAAAGCTTTTCACAAGATTAGCC
Found at i:1856178 original size:100 final size:100
Alignment explanation
Indices: 1856037--1856244 Score: 265
Period size: 100 Copynumber: 2.1 Consensus size: 100
1856027 CTAATACTTC
* * *
1856037 GCGACAAAGGCTTCACAGATAATGCGCCACTAGAGATTTTCACAAGAGTAGCCACAAAGGCTTCC
1 GCGACAAAGGCTTCACAGATAATACACCACAAGAGATTTTCACAAGAGTAGCCACAAAGGCTTCC
*
1856102 CAAATAATACGCCACAAAGTCTTTTCACAAGATTA
66 CAAATAATACGCCACAAAGGCTTTTCACAAGATTA
* * * ** *
1856137 GCGACAAAGGCTTCTA-AGATAATACACCACAAGTGTTTTTCACAAGATTAGCCGTACAGGCTTC
1 GCGACAAAGGCTTC-ACAGATAATACACCACAAGAGATTTTCACAAGAGTAGCCACAAAGGCTTC
** * *
1856201 TTAGATAATACGCCATAAAGGCTTTTCACAAGATTA
65 CCAAATAATACGCCACAAAGGCTTTTCACAAGATTA
*
1856237 GCCACAAA
1 GCGACAAA
1856245 AACTTCCAAG
Statistics
Matches: 92, Mismatches: 15, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
100 91 0.99
101 1 0.01
ACGTcount: A:0.37, C:0.24, G:0.17, T:0.23
Consensus pattern (100 bp):
GCGACAAAGGCTTCACAGATAATACACCACAAGAGATTTTCACAAGAGTAGCCACAAAGGCTTCC
CAAATAATACGCCACAAAGGCTTTTCACAAGATTA
Found at i:1856240 original size:25 final size:25
Alignment explanation
Indices: 1856173--1856240 Score: 61
Period size: 25 Copynumber: 2.7 Consensus size: 25
1856163 CCACAAGTGT
* *
1856173 TTTTCACAAGATTAGCCGTACAGGC
1 TTTTCACAAGATTAGCCATAAAGGC
*
1856198 TTCTT-AGATA-A-TACGCCATAAAGGC
1 TT-TTCACA-AGATTA-GCCATAAAGGC
1856223 TTTTCACAAGATTAGCCA
1 TTTTCACAAGATTAGCCA
1856241 CAAAAACTTC
Statistics
Matches: 33, Mismatches: 4, Indels: 12
0.67 0.08 0.24
Matches are distributed among these distances:
24 5 0.15
25 23 0.70
26 5 0.15
ACGTcount: A:0.32, C:0.22, G:0.16, T:0.29
Consensus pattern (25 bp):
TTTTCACAAGATTAGCCATAAAGGC
Found at i:1861747 original size:50 final size:50
Alignment explanation
Indices: 1861667--1861960 Score: 297
Period size: 50 Copynumber: 5.9 Consensus size: 50
1861657 TTATACTTCT
*
1861667 CCACAAAGGATTCTT-A-AACGATTAGCCACAAAGGTTTCCTAGATAATATG
1 CCACAAAGGATT-TTCACAA-GATTAGCCACAAAGGTTTCCCAGATAATATG
* * * * **
1861717 CCACAAGGGCTTTTCACAAGATTAGTCACAAAGGATTATCAGATAATATG
1 CCACAAAGGATTTTCACAAGATTAGCCACAAAGGTTTCCCAGATAATATG
* * * * * *
1861767 GCACAAATGCTTTTCACAAAATTAGCCACAAAGGCTTCCCAAATAATATG
1 CCACAAAGGATTTTCACAAGATTAGCCACAAAGGTTTCCCAGATAATATG
** * * * **
1861817 TGACAAAGGTTTTTCACAAGATTAGCCACAATGG-TTCCTAGATAATACA
1 CCACAAAGGATTTTCACAAGATTAGCCACAAAGGTTTCCCAGATAATATG
* * * * * * *
1861866 CAACAAGGGATTTTCACAATATTAGCCACAAAGGCTTCCCGGATTATACG
1 CCACAAAGGATTTTCACAAGATTAGCCACAAAGGTTTCCCAGATAATATG
*
1861916 CCACAAAGAATTTTCACAAGATTAGCCACAAAGGTTTCCCAGATA
1 CCACAAAGGATTTTCACAAGATTAGCCACAAAGGTTTCCCAGATA
1861961 GTGTCATGTT
Statistics
Matches: 198, Mismatches: 43, Indels: 6
0.80 0.17 0.02
Matches are distributed among these distances:
49 41 0.21
50 155 0.78
51 2 0.01
ACGTcount: A:0.38, C:0.21, G:0.16, T:0.25
Consensus pattern (50 bp):
CCACAAAGGATTTTCACAAGATTAGCCACAAAGGTTTCCCAGATAATATG
Found at i:1861847 original size:25 final size:24
Alignment explanation
Indices: 1861686--1861952 Score: 81
Period size: 25 Copynumber: 10.8 Consensus size: 24
1861676 ATTCTTAAAC
*
1861686 GATTAGCCACAAAGG-TTTC-CTA
1 GATTAGCCACAAAGGTTTTCACAA
*
1861708 GATAATATGCCACAAGGGCTTTTCACAA
1 GAT--TA-GCCACAAAGG-TTTTCACAA
* * *
1861736 GATTAGTCACAAAGGATTATCAGATA
1 GATTAGCCACAAAGG-TTTTCACA-A
* *
1861762 -A-TATGGCACAAATGCTTTTCACAA
1 GATTA-GCCACAAA-GGTTTTCACAA
* * *
1861786 AATTAGCCACAAAGG-CTTCCCAA
1 GATTAGCCACAAAGGTTTTCACAA
**
1861809 -ATAATATGTGACAAAGGTTTTTCACAA
1 GAT--TA-GCCACAAAGG-TTTTCACAA
* *
1861836 GATTAGCCACAATGG--TTC-CTA
1 GATTAGCCACAAAGGTTTTCACAA
*
1861857 GATAATA-CACAACAAGGGATTTTCACAA
1 GAT--TAGC-C-ACAAAGG-TTTTCACAA
* * **
1861885 TATTAGCCACAAAGG-CTTC-CCG
1 GATTAGCCACAAAGGTTTTCACAA
*
1861907 GATTATACGCCACAAAGAATTTTCACAA
1 GA-T-TA-GCCACAAAG-GTTTTCACAA
1861935 GATTAGCCACAAAGGTTT
1 GATTAGCCACAAAGGTTT
1861953 CCCAGATAGT
Statistics
Matches: 177, Mismatches: 36, Indels: 62
0.64 0.13 0.23
Matches are distributed among these distances:
21 5 0.03
22 11 0.06
23 13 0.07
24 19 0.11
25 84 0.47
26 13 0.07
27 18 0.10
28 14 0.08
ACGTcount: A:0.37, C:0.21, G:0.16, T:0.26
Consensus pattern (24 bp):
GATTAGCCACAAAGGTTTTCACAA
Found at i:1865990 original size:36 final size:34
Alignment explanation
Indices: 1865900--1865995 Score: 92
Period size: 36 Copynumber: 2.8 Consensus size: 34
1865890 AAAAATGTAC
*
1865900 AAGACCATGGTTGGACCATGGC-GATGTATACGT
1 AAGACCATGGTTGGACCATGGCAGATGTATACAT
* * *
1865933 AAGACCATAGCG-AGG-CTATGGCAGTTGTTCATACAT
1 AAGACCAT-G-GTTGGACCATGGCAGATG-T-ATACAT
1865969 AAGACCATGGTTGGACCATGGCA-ATGT
1 AAGACCATGGTTGGACCATGGCAGATGT
1865996 GTATATATAT
Statistics
Matches: 49, Mismatches: 7, Indels: 13
0.71 0.10 0.19
Matches are distributed among these distances:
33 14 0.29
34 8 0.16
35 7 0.14
36 20 0.41
ACGTcount: A:0.29, C:0.19, G:0.28, T:0.24
Consensus pattern (34 bp):
AAGACCATGGTTGGACCATGGCAGATGTATACAT
Found at i:1872401 original size:42 final size:42
Alignment explanation
Indices: 1872342--1872445 Score: 147
Period size: 42 Copynumber: 2.5 Consensus size: 42
1872332 ACGGCCAAGC
* * *
1872342 CACACGCCCGTGTGCCAGGCTGTGTAACTTTTAAAATGGCCT
1 CACACGCCCGTGTGCCAGGCCGTGTAACTTTCAAAATAGCCT
* *
1872384 CACACACCCGTGTGCCAGGCCGTGTAACTTTCGAAATAGCCT
1 CACACGCCCGTGTGCCAGGCCGTGTAACTTTCAAAATAGCCT
*
1872426 CATACGCCCGTGTG-CAGGCC
1 CACACGCCCGTGTGCCAGGCC
1872446 ATGTGCTAGG
Statistics
Matches: 55, Mismatches: 7, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
41 6 0.11
42 49 0.89
ACGTcount: A:0.21, C:0.33, G:0.24, T:0.22
Consensus pattern (42 bp):
CACACGCCCGTGTGCCAGGCCGTGTAACTTTCAAAATAGCCT
Found at i:1873360 original size:21 final size:20
Alignment explanation
Indices: 1873334--1873401 Score: 55
Period size: 21 Copynumber: 3.3 Consensus size: 20
1873324 GGAGTGTAAA
1873334 CAGGGGCACGTATGTGCTATT
1 CAGGGGCACGTATGTGC-ATT
* * * * **
1873355 CAGGGGTACGAAAGTACAAA
1 CAGGGGCACGTATGTGCATT
*
1873375 CAGGGGCATGTATGTGCAATT
1 CAGGGGCACGTATGTGC-ATT
1873396 CAGGGG
1 CAGGGG
1873402 TACCAATGTA
Statistics
Matches: 33, Mismatches: 13, Indels: 2
0.69 0.27 0.04
Matches are distributed among these distances:
20 13 0.39
21 20 0.61
ACGTcount: A:0.28, C:0.16, G:0.35, T:0.21
Consensus pattern (20 bp):
CAGGGGCACGTATGTGCATT
Found at i:1873388 original size:41 final size:41
Alignment explanation
Indices: 1873331--1873438 Score: 162
Period size: 41 Copynumber: 2.6 Consensus size: 41
1873321 GTCGGAGTGT
* * *
1873331 AAACAGGGGCACGTATGTGCTATTCAGGGGTACGAAAGTAC
1 AAACAGGGGCATGTATGTGCAATTCAGGGGTACCAAAGTAC
*
1873372 AAACAGGGGCATGTATGTGCAATTCAGGGGTACCAATGTAC
1 AAACAGGGGCATGTATGTGCAATTCAGGGGTACCAAAGTAC
* *
1873413 AAATAGGGGCATGTATGTACAATTCA
1 AAACAGGGGCATGTATGTGCAATTCA
1873439 AAGTATAATT
Statistics
Matches: 61, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
41 61 1.00
ACGTcount: A:0.33, C:0.16, G:0.29, T:0.22
Consensus pattern (41 bp):
AAACAGGGGCATGTATGTGCAATTCAGGGGTACCAAAGTAC
Found at i:1873430 original size:20 final size:20
Alignment explanation
Indices: 1873368--1873434 Score: 62
Period size: 20 Copynumber: 3.3 Consensus size: 20
1873358 GGGTACGAAA
*
1873368 GTACAAACAGGGGCATGTAT
1 GTACAAATAGGGGCATGTAT
* * * ***
1873388 GTGCAATTCAGGGGTACCAAT
1 GTACAAAT-AGGGGCATGTAT
1873409 GTACAAATAGGGGCATGTAT
1 GTACAAATAGGGGCATGTAT
1873429 GTACAA
1 GTACAA
1873435 TTCAAAGTAT
Statistics
Matches: 33, Mismatches: 13, Indels: 2
0.69 0.27 0.04
Matches are distributed among these distances:
20 19 0.58
21 14 0.42
ACGTcount: A:0.34, C:0.15, G:0.28, T:0.22
Consensus pattern (20 bp):
GTACAAATAGGGGCATGTAT
Found at i:1875536 original size:16 final size:16
Alignment explanation
Indices: 1875515--1875545 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
1875505 CATGTAAGAG
1875515 CATATAAATTTGAAAC
1 CATATAAATTTGAAAC
*
1875531 CATATATATTTGAAA
1 CATATAAATTTGAAA
1875546 AATTTTCCAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.48, C:0.10, G:0.06, T:0.35
Consensus pattern (16 bp):
CATATAAATTTGAAAC
Found at i:1878293 original size:21 final size:20
Alignment explanation
Indices: 1878258--1878312 Score: 74
Period size: 21 Copynumber: 2.7 Consensus size: 20
1878248 TTAAGGATTG
* *
1878258 AAAATTCGAAATTGAAAATT
1 AAAATTTGAAATTGAAAAAT
*
1878278 TAAATTTGAAGATTGAAAAAT
1 AAAATTTGAA-ATTGAAAAAT
1878299 AAAATTTGAAATTG
1 AAAATTTGAAATTG
1878313 GGGATTGAAT
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
20 12 0.40
21 18 0.60
ACGTcount: A:0.53, C:0.02, G:0.13, T:0.33
Consensus pattern (20 bp):
AAAATTTGAAATTGAAAAAT
Found at i:1878332 original size:14 final size:14
Alignment explanation
Indices: 1878315--1878355 Score: 64
Period size: 14 Copynumber: 2.9 Consensus size: 14
1878305 TGAAATTGGG
*
1878315 GATTGAATATTGAA
1 GATTGAAGATTGAA
*
1878329 GATTGAAGATCGAA
1 GATTGAAGATTGAA
1878343 GATTGAAGATTGA
1 GATTGAAGATTGA
1878356 GAATTTAGGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
14 24 1.00
ACGTcount: A:0.41, C:0.02, G:0.27, T:0.29
Consensus pattern (14 bp):
GATTGAAGATTGAA
Found at i:1880002 original size:38 final size:37
Alignment explanation
Indices: 1879935--1880013 Score: 90
Period size: 38 Copynumber: 2.1 Consensus size: 37
1879925 TGCTCTGAAA
* * *
1879935 GGTTGAGCAAATCTCCCATCATCTTGATGC-TCCACAG
1 GGTTAAGCAAATCTCCCACCATCTGGATGCTTCCA-AG
1879972 GGTTAAGCAAATCTTCCCACCAT-TGGGATGCTTCCAAG
1 GGTTAAGCAAATC-TCCCACCATCT-GGATGCTTCCAAG
1880010 GGTT
1 GGTT
1880014 GAGCTATCCT
Statistics
Matches: 36, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
37 13 0.36
38 19 0.53
39 4 0.11
ACGTcount: A:0.24, C:0.27, G:0.22, T:0.28
Consensus pattern (37 bp):
GGTTAAGCAAATCTCCCACCATCTGGATGCTTCCAAG
Found at i:1881073 original size:11 final size:12
Alignment explanation
Indices: 1881030--1881077 Score: 57
Period size: 11 Copynumber: 4.2 Consensus size: 12
1881020 CATACATCAG
1881030 CTTTGTTTGCAT
1 CTTTGTTTGCAT
1881042 CTTTG-TTG-AT
1 CTTTGTTTGCAT
*
1881052 GGTTTGTTTGCAT
1 -CTTTGTTTGCAT
1881065 CTTTG-TTGCAT
1 CTTTGTTTGCAT
1881076 CT
1 CT
1881078 ATGTAATTAT
Statistics
Matches: 31, Mismatches: 2, Indels: 7
0.77 0.05 0.17
Matches are distributed among these distances:
10 2 0.06
11 15 0.48
12 12 0.39
13 2 0.06
ACGTcount: A:0.08, C:0.15, G:0.21, T:0.56
Consensus pattern (12 bp):
CTTTGTTTGCAT
Found at i:1882756 original size:15 final size:15
Alignment explanation
Indices: 1882706--1882759 Score: 55
Period size: 15 Copynumber: 3.9 Consensus size: 15
1882696 CAATTTACGT
*
1882706 TTCTGTATGTTTATA
1 TTCTGTATGTTTCTA
1882721 TTCTGTATG--TC--
1 TTCTGTATGTTTCTA
*
1882732 -TCTTTATGTTTCTA
1 TTCTGTATGTTTCTA
1882746 TTCTGTATGTTTCT
1 TTCTGTATGTTTCT
1882760 GTATGTTTCT
Statistics
Matches: 31, Mismatches: 3, Indels: 10
0.70 0.07 0.23
Matches are distributed among these distances:
10 7 0.23
12 2 0.06
13 1 0.03
15 21 0.68
ACGTcount: A:0.13, C:0.13, G:0.13, T:0.61
Consensus pattern (15 bp):
TTCTGTATGTTTCTA
Found at i:1882769 original size:25 final size:25
Alignment explanation
Indices: 1882677--1882767 Score: 119
Period size: 25 Copynumber: 3.6 Consensus size: 25
1882667 AGTGGAAATG
* *
1882677 GTTTCTGTATGTTTATATTCAATTTAC
1 GTTTCTGTATGTTTATATTC--TGTAT
1882704 GTTTCTGTATGTTTATATTCTGTAT
1 GTTTCTGTATGTTTATATTCTGTAT
* * *
1882729 GTCTCTTTATGTTTCTATTCTGTAT
1 GTTTCTGTATGTTTATATTCTGTAT
1882754 GTTTCTGTATGTTT
1 GTTTCTGTATGTTT
1882768 CTTGATGGTA
Statistics
Matches: 57, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
25 37 0.65
27 20 0.35
ACGTcount: A:0.15, C:0.11, G:0.14, T:0.59
Consensus pattern (25 bp):
GTTTCTGTATGTTTATATTCTGTAT
Found at i:1883069 original size:16 final size:17
Alignment explanation
Indices: 1883033--1883085 Score: 70
Period size: 17 Copynumber: 3.1 Consensus size: 17
1883023 TTTGGTTATA
*
1883033 TTTTAGTTTCAATATGT
1 TTTTATTTTCAATATGT
*
1883050 TTTTATTTTCGATATGT
1 TTTTATTTTCAATATGT
**
1883067 TTTTATTTTTTATATGT
1 TTTTATTTTCAATATGT
1883084 TT
1 TT
1883086 CATTTAAAAC
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 32 1.00
ACGTcount: A:0.19, C:0.04, G:0.09, T:0.68
Consensus pattern (17 bp):
TTTTATTTTCAATATGT
Found at i:1883233 original size:48 final size:47
Alignment explanation
Indices: 1883177--1883277 Score: 132
Period size: 48 Copynumber: 2.1 Consensus size: 47
1883167 TTGGTCTTCA
* * * *
1883177 AACAATG-TTTTATATTACTTAAATTTTTTTGATTAAAAATTATATTT
1 AACAATGTTTTTATATTACTTAAA-TTGTTTGATAAAAAAATATAATT
*
1883224 GAACAATGTTTTTATATTACTTATATTGTTTGATAAAAAAATATAATT
1 -AACAATGTTTTTATATTACTTAAATTGTTTGATAAAAAAATATAATT
1883272 AACAAT
1 AACAAT
1883278 ACAAAAATTA
Statistics
Matches: 47, Mismatches: 5, Indels: 3
0.85 0.09 0.05
Matches are distributed among these distances:
47 6 0.13
48 26 0.55
49 15 0.32
ACGTcount: A:0.42, C:0.05, G:0.06, T:0.48
Consensus pattern (47 bp):
AACAATGTTTTTATATTACTTAAATTGTTTGATAAAAAAATATAATT
Found at i:1883370 original size:19 final size:18
Alignment explanation
Indices: 1883346--1883486 Score: 147
Period size: 19 Copynumber: 7.1 Consensus size: 18
1883336 CAAACATTAT
1883346 AATTATAATTAACACTAGA
1 AATTATAATTAACACTA-A
1883365 AATTATAATTAACACTAA
1 AATTATAATTAACACTAA
1883383 AATTTATAATTAACACTAAA
1 AA-TTATAATTAACACT-AA
* *
1883403 AATTAATCAAATGCTACAAACATTAT
1 AATT-AT--AAT--T---AACACTAA
1883429 AATTATAATTAACACTAGA
1 AATTATAATTAACACTA-A
1883448 AATTATAATTAACACTAA
1 AATTATAATTAACACTAA
1883466 AATTTATAATTAACACTAA
1 AA-TTATAATTAACACTAA
1883485 AA
1 AA
1883487 ATTAATCAAA
Statistics
Matches: 106, Mismatches: 4, Indels: 24
0.79 0.03 0.18
Matches are distributed among these distances:
18 12 0.11
19 68 0.64
20 6 0.06
21 1 0.01
22 3 0.03
23 3 0.03
24 1 0.01
25 2 0.02
26 5 0.05
27 5 0.05
ACGTcount: A:0.54, C:0.11, G:0.02, T:0.33
Consensus pattern (18 bp):
AATTATAATTAACACTAA
Found at i:1883415 original size:83 final size:83
Alignment explanation
Indices: 1883322--1883535 Score: 410
Period size: 83 Copynumber: 2.6 Consensus size: 83
1883312 AAAAAGTTTT
1883322 TTAATCAAATGCTACAAACATTATAATTATAATTAACACTAGAAATTATAATTAACACTAAAATT
1 TTAATCAAATGCTACAAACATTATAATTATAATTAACACTAGAAATTATAATTAACACTAAAATT
1883387 TATAATTAACACTAAAAA
66 TATAATTAACACTAAAAA
1883405 TTAATCAAATGCTACAAACATTATAATTATAATTAACACTAGAAATTATAATTAACACTAAAATT
1 TTAATCAAATGCTACAAACATTATAATTATAATTAACACTAGAAATTATAATTAACACTAAAATT
1883470 TATAATTAACACTAAAAA
66 TATAATTAACACTAAAAA
* *
1883488 TTAATCAAATGCTACAAACATTATAATTATAATTAACACGAAAAATTA
1 TTAATCAAATGCTACAAACATTATAATTATAATTAACACTAGAAATTA
1883536 ATCAAATGCT
Statistics
Matches: 129, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
83 129 1.00
ACGTcount: A:0.53, C:0.12, G:0.03, T:0.32
Consensus pattern (83 bp):
TTAATCAAATGCTACAAACATTATAATTATAATTAACACTAGAAATTATAATTAACACTAAAATT
TATAATTAACACTAAAAA
Found at i:1883451 original size:45 final size:44
Alignment explanation
Indices: 1883386--1883561 Score: 231
Period size: 45 Copynumber: 4.1 Consensus size: 44
1883376 ACACTAAAAT
1883386 TTATAATTAACACTAAAAATTAATCAAATGCTACAAACATTATAA
1 TTATAATTAACACTAAAAATTAATCAAATGCTAC-AACATTATAA
* * *
1883431 TTATAATTAACACTAGAAATT-AT--AAT--T--AACACTAAAA
1 TTATAATTAACACTAAAAATTAATCAAATGCTACAACATTATAA
1883468 TTTATAATTAACACTAAAAATTAATCAAATGCTACAAACATTATAA
1 -TTATAATTAACACTAAAAATTAATCAAATGCTAC-AACATTATAA
*
1883514 TTATAATTAACACGAAAAATTAATCAAATGCTACAACAATTATAA
1 TTATAATTAACACTAAAAATTAATCAAATGCTACAAC-ATTATAA
1883559 TTA
1 TTA
1883562 ACATTACAAA
Statistics
Matches: 114, Mismatches: 7, Indels: 20
0.81 0.05 0.14
Matches are distributed among these distances:
37 8 0.07
38 20 0.18
39 2 0.02
40 1 0.01
41 3 0.03
42 3 0.03
43 1 0.01
44 5 0.04
45 63 0.55
46 8 0.07
ACGTcount: A:0.53, C:0.12, G:0.03, T:0.32
Consensus pattern (44 bp):
TTATAATTAACACTAAAAATTAATCAAATGCTACAACATTATAA
Found at i:1883593 original size:21 final size:21
Alignment explanation
Indices: 1883551--1883594 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
1883541 ATGCTACAAC
* *
1883551 AATTATAATTAACATTACAAA
1 AATTATAATTAACACTAAAAA
*
1883572 AATTATAATTATCACTAAAAA
1 AATTATAATTAACACTAAAAA
1883593 AA
1 AA
1883595 GAAAGTAAAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.59, C:0.09, G:0.00, T:0.32
Consensus pattern (21 bp):
AATTATAATTAACACTAAAAA
Found at i:1884657 original size:19 final size:19
Alignment explanation
Indices: 1884633--1884670 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
1884623 TTTAAATATA
* *
1884633 GTATCCTAACTCAATGTTT
1 GTATCCTAAATCAAGGTTT
1884652 GTATCCTAAATCAAGGTTT
1 GTATCCTAAATCAAGGTTT
1884671 TATAACATGT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.29, C:0.18, G:0.13, T:0.39
Consensus pattern (19 bp):
GTATCCTAAATCAAGGTTT
Found at i:1887132 original size:61 final size:60
Alignment explanation
Indices: 1887036--1887218 Score: 165
Period size: 59 Copynumber: 3.0 Consensus size: 60
1887026 ATTATATTTA
* * * * *
1887036 ATAATAATTATTTTAAATTATATTTTATAGTATTATATATTATGATTTTAGTAAATTCAT
1 ATAAGAATTATTTCAAATAAAATTTTATAGAATTATATATTATGATTTTAGTAAATTCAT
* * ** * * *
1887096 ATAAGAA-TATTTCATACTAAGAATTTTATTA-AATTATATATTATTATTAAATTATATTTA-
1 ATAAGAATTATTTCA-AATAA-AATTTTA-TAGAATTATATATTATGATTTTAGTAAATTCAT
* * * * *
1887156 ATAATAATTATTTTAAATTATATTTTATAGTATTATATATTATGATTTTAGTAAATTCAT
1 ATAAGAATTATTTCAAATAAAATTTTATAGAATTATATATTATGATTTTAGTAAATTCAT
1887216 ATA
1 ATA
1887219 NNNNNNNNNN
Statistics
Matches: 93, Mismatches: 24, Indels: 12
0.72 0.19 0.09
Matches are distributed among these distances:
58 2 0.02
59 34 0.37
60 21 0.23
61 34 0.37
62 2 0.02
ACGTcount: A:0.42, C:0.02, G:0.04, T:0.51
Consensus pattern (60 bp):
ATAAGAATTATTTCAAATAAAATTTTATAGAATTATATATTATGATTTTAGTAAATTCAT
Found at i:1887177 original size:26 final size:28
Alignment explanation
Indices: 1887117--1887198 Score: 87
Period size: 26 Copynumber: 2.9 Consensus size: 28
1887107 TCATACTAAG
* * *
1887117 AATTTTATTAAATTATATATTATTATTA
1 AATTATATTTAATAATATATTATTATTA
1887145 AATTATATTTAATAATA-ATTATT-TTA
1 AATTATATTTAATAATATATTATTATTA
* *
1887171 AATTATATTTTATAGTATTATATATTAT
1 AATTATATTTAATAATA-TAT-TATTAT
1887199 GATTTTAGTA
Statistics
Matches: 45, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
26 18 0.40
27 6 0.13
28 16 0.36
29 4 0.09
30 1 0.02
ACGTcount: A:0.43, C:0.00, G:0.01, T:0.56
Consensus pattern (28 bp):
AATTATATTTAATAATATATTATTATTA
Found at i:1887359 original size:15 final size:16
Alignment explanation
Indices: 1887331--1887360 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
1887321 TAAATTCATA
1887331 TAAGAATATTTATTAT
1 TAAGAATATTTATTAT
1887347 TAAGAAT-TTTATTA
1 TAAGAATATTTATTA
1887361 AATTATATAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.43, C:0.00, G:0.07, T:0.50
Consensus pattern (16 bp):
TAAGAATATTTATTAT
Found at i:1887372 original size:17 final size:18
Alignment explanation
Indices: 1887352--1887385 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
1887342 ATTATTAAGA
*
1887352 ATTTT-ATTAAATTATAT
1 ATTTTAATTAAAATATAT
1887369 ATTTTAATTAAAATATA
1 ATTTTAATTAAAATATA
1887386 CTTAATAATA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (18 bp):
ATTTTAATTAAAATATAT
Found at i:1887635 original size:46 final size:44
Alignment explanation
Indices: 1887544--1887637 Score: 134
Period size: 44 Copynumber: 2.1 Consensus size: 44
1887534 ATTACAACTT
*
1887544 CATTCCATTCAACAAAACACAAGAATACTATTACACCTCTATTC
1 CATTCCATTCAACAAAACAAAAGAATACTATTACACCTCTATTC
* * *
1887588 CATTCCATTCAACCAAACAAAAGGATTACCTATTACGCCTCTATTC
1 CATTCCATTCAACAAAACAAAA-GAATA-CTATTACACCTCTATTC
1887634 CATT
1 CATT
1887638 ACAACGAACA
Statistics
Matches: 44, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
44 20 0.45
45 4 0.09
46 20 0.45
ACGTcount: A:0.37, C:0.30, G:0.04, T:0.29
Consensus pattern (44 bp):
CATTCCATTCAACAAAACAAAAGAATACTATTACACCTCTATTC
Found at i:1895477 original size:4 final size:4
Alignment explanation
Indices: 1895470--1895508 Score: 78
Period size: 4 Copynumber: 9.8 Consensus size: 4
1895460 GTTATATATA
1895470 AGTT AGTT AGTT AGTT AGTT AGTT AGTT AGTT AGTT AGT
1 AGTT AGTT AGTT AGTT AGTT AGTT AGTT AGTT AGTT AGT
1895509 AAAAGTCTAT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 35 1.00
ACGTcount: A:0.26, C:0.00, G:0.26, T:0.49
Consensus pattern (4 bp):
AGTT
Found at i:1895864 original size:19 final size:20
Alignment explanation
Indices: 1895840--1895885 Score: 67
Period size: 19 Copynumber: 2.4 Consensus size: 20
1895830 CATCCAAACA
*
1895840 CCAGAAAAGTAAATCA-TTT
1 CCAGAAAAATAAATCATTTT
*
1895859 CCAGAAAAATAAATTATTTT
1 CCAGAAAAATAAATCATTTT
1895879 CCAGAAA
1 CCAGAAA
1895886 TCATTTTCTG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
19 14 0.58
20 10 0.42
ACGTcount: A:0.50, C:0.15, G:0.09, T:0.26
Consensus pattern (20 bp):
CCAGAAAAATAAATCATTTT
Found at i:1897686 original size:33 final size:33
Alignment explanation
Indices: 1897644--1897725 Score: 164
Period size: 33 Copynumber: 2.5 Consensus size: 33
1897634 AAAATCTTAT
1897644 CCTTTCAAACATGTTGCAGGGAAGCCTGCTCAC
1 CCTTTCAAACATGTTGCAGGGAAGCCTGCTCAC
1897677 CCTTTCAAACATGTTGCAGGGAAGCCTGCTCAC
1 CCTTTCAAACATGTTGCAGGGAAGCCTGCTCAC
1897710 CCTTTCAAACATGTTG
1 CCTTTCAAACATGTTG
1897726 GTTCTGAAAA
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 49 1.00
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.27
Consensus pattern (33 bp):
CCTTTCAAACATGTTGCAGGGAAGCCTGCTCAC
Found at i:1899785 original size:16 final size:16
Alignment explanation
Indices: 1899764--1899801 Score: 58
Period size: 16 Copynumber: 2.4 Consensus size: 16
1899754 TTTGGTTCGC
1899764 TGTAATGGAATAAAGG
1 TGTAATGGAATAAAGG
* *
1899780 TGTAATGGAATAGAGT
1 TGTAATGGAATAAAGG
1899796 TGTAAT
1 TGTAAT
1899802 AGTAATTCAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.39, C:0.00, G:0.29, T:0.32
Consensus pattern (16 bp):
TGTAATGGAATAAAGG
Found at i:1899873 original size:44 final size:45
Alignment explanation
Indices: 1899787--1899874 Score: 126
Period size: 44 Copynumber: 2.0 Consensus size: 45
1899777 AGGTGTAATG
**
1899787 GAATAGAGTTGTAATAGTAATTCAATTGTTTGGTTGAATGGAATA
1 GAATAGAACTGTAATAGTAATTCAATTGTTTGGTTGAATGGAATA
*
1899832 GAATAGAACTGTAATAGT-ATTC-TTGTGTTTGGTTGAATGGAAT
1 GAATAGAACTGTAATAGTAATTCAAT-TGTTTGGTTGAATGGAAT
1899875 GATGTTGTAA
Statistics
Matches: 39, Mismatches: 3, Indels: 3
0.87 0.07 0.07
Matches are distributed among these distances:
43 1 0.03
44 22 0.56
45 16 0.41
ACGTcount: A:0.33, C:0.03, G:0.25, T:0.39
Consensus pattern (45 bp):
GAATAGAACTGTAATAGTAATTCAATTGTTTGGTTGAATGGAATA
Found at i:1899884 original size:39 final size:41
Alignment explanation
Indices: 1899783--1899887 Score: 119
Period size: 44 Copynumber: 2.5 Consensus size: 41
1899773 ATAAAGGTGT
1899783 AATGGAATAGA-GTTGTAATAGTAATTCAATTGTTTGGTTG
1 AATGGAATAGATGTTGTAATAGTAATTCAATTGTTTGGTTG
* *
1899823 AATGGAATAGAATAGAACTGTAATAGT-ATTC-TTGTGTTTGGTTG
1 AATGGAATAG-AT-G--TTGTAATAGTAATTCAAT-TGTTTGGTTG
1899867 AATGGAAT-GATGTTGTAATAG
1 AATGGAATAGATGTTGTAATAG
1899888 CATAAGGAAA
Statistics
Matches: 56, Mismatches: 3, Indels: 13
0.78 0.04 0.18
Matches are distributed among these distances:
39 8 0.14
40 10 0.18
41 2 0.04
42 2 0.04
43 3 0.05
44 22 0.39
45 9 0.16
ACGTcount: A:0.33, C:0.03, G:0.26, T:0.38
Consensus pattern (41 bp):
AATGGAATAGATGTTGTAATAGTAATTCAATTGTTTGGTTG
Found at i:1903993 original size:13 final size:13
Alignment explanation
Indices: 1903972--1904022 Score: 59
Period size: 13 Copynumber: 3.9 Consensus size: 13
1903962 ACACTCAAAT
1903972 TTTTCAAAAGCAC
1 TTTTCAAAAGCAC
* *
1903985 TTATCAAAAGTAC
1 TTTTCAAAAGCAC
*
1903998 TTTTTC-ACAGCAC
1 -TTTTCAAAAGCAC
1904011 TTTTCAAAAGCA
1 TTTTCAAAAGCA
1904023 TTAAAGAACT
Statistics
Matches: 30, Mismatches: 6, Indels: 4
0.75 0.15 0.10
Matches are distributed among these distances:
12 5 0.17
13 21 0.70
14 4 0.13
ACGTcount: A:0.37, C:0.22, G:0.08, T:0.33
Consensus pattern (13 bp):
TTTTCAAAAGCAC
Found at i:1906086 original size:22 final size:22
Alignment explanation
Indices: 1906060--1906103 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
1906050 AATCTTCAAG
1906060 GATATGCAATCTTAGAAGATAT
1 GATATGCAATCTTAGAAGATAT
1906082 GATATGCAATCTTAGAAGATAT
1 GATATGCAATCTTAGAAGATAT
1906104 AATTTTGTAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.41, C:0.09, G:0.18, T:0.32
Consensus pattern (22 bp):
GATATGCAATCTTAGAAGATAT
Found at i:1906123 original size:22 final size:23
Alignment explanation
Indices: 1906071--1906138 Score: 61
Period size: 22 Copynumber: 3.0 Consensus size: 23
1906061 ATATGCAATC
* * * *
1906071 TTAGAAGATATGATATGCA-ATC
1 TTAGAAGATATAATTTGTAGATA
1906093 TTAGAAGATATAATTTTGTA-ATA
1 TTAGAAGATATAA-TTTGTAGATA
*
1906116 TTAG-AGATTTAATTTGTAGATA
1 TTAGAAGATATAATTTGTAGATA
1906138 T
1 T
1906139 CCTTTAATCT
Statistics
Matches: 39, Mismatches: 5, Indels: 4
0.81 0.10 0.08
Matches are distributed among these distances:
21 6 0.15
22 23 0.59
23 10 0.26
ACGTcount: A:0.40, C:0.03, G:0.16, T:0.41
Consensus pattern (23 bp):
TTAGAAGATATAATTTGTAGATA
Found at i:1908576 original size:19 final size:20
Alignment explanation
Indices: 1908535--1908578 Score: 72
Period size: 20 Copynumber: 2.2 Consensus size: 20
1908525 AAATGGAGAA
1908535 AAGAAAAGAAACGTAAAGAG
1 AAGAAAAGAAACGTAAAGAG
*
1908555 AAGAAAAGAAACGT-ACGAG
1 AAGAAAAGAAACGTAAAGAG
1908574 AAGAA
1 AAGAA
1908579 GAAGCAGAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
19 9 0.39
20 14 0.61
ACGTcount: A:0.64, C:0.07, G:0.25, T:0.05
Consensus pattern (20 bp):
AAGAAAAGAAACGTAAAGAG
Found at i:1908582 original size:25 final size:21
Alignment explanation
Indices: 1908531--1908581 Score: 70
Period size: 20 Copynumber: 2.5 Consensus size: 21
1908521 GATAAAATGG
1908531 AGAA-AAGAAAAGAAACGTAA
1 AGAAGAAGAAAAGAAACGTAA
*
1908551 AG-AGAAGAAAAGAAACGTACG
1 AGAAGAAGAAAAGAAACGTA-A
1908572 AGAAGAAGAA
1 AGAAGAAGAA
1908582 GCAGAAATCG
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
19 1 0.04
20 17 0.63
21 2 0.07
22 7 0.26
ACGTcount: A:0.65, C:0.06, G:0.25, T:0.04
Consensus pattern (21 bp):
AGAAGAAGAAAAGAAACGTAA
Found at i:1911379 original size:16 final size:16
Alignment explanation
Indices: 1911354--1911406 Score: 70
Period size: 16 Copynumber: 3.3 Consensus size: 16
1911344 TTGGTTCGCT
*
1911354 GTAATAGAATAGAGGC
1 GTAATGGAATAGAGGC
* *
1911370 GTAATGGAATAGAAGT
1 GTAATGGAATAGAGGC
*
1911386 GTAATGTAATAGAGGC
1 GTAATGGAATAGAGGC
1911402 GTAAT
1 GTAAT
1911407 AACAAATCAA
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
16 31 1.00
ACGTcount: A:0.42, C:0.04, G:0.30, T:0.25
Consensus pattern (16 bp):
GTAATGGAATAGAGGC
Found at i:1911657 original size:16 final size:16
Alignment explanation
Indices: 1911620--1911661 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
1911610 TTAATCATAT
*
1911620 TTAAACATA-ATTATTA
1 TTAAA-ATATATTATAA
1911636 TT-AAATATATTATAA
1 TTAAAATATATTATAA
1911651 TTAAAATATAT
1 TTAAAATATAT
1911662 AATTTAATAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 3 0.13
15 10 0.43
16 10 0.43
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.45
Consensus pattern (16 bp):
TTAAAATATATTATAA
Found at i:1911668 original size:14 final size:15
Alignment explanation
Indices: 1911629--1911670 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
1911619 TTTAAACATA
*
1911629 ATTATTATTAAATAT
1 ATTATAATTAAATAT
1911644 ATTATAATTAAA-AT
1 ATTATAATTAAATAT
*
1911658 A-TATAATTTAATA
1 ATTATAATTAAATA
1911671 AAATTCTTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 9 0.38
14 4 0.17
15 11 0.46
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (15 bp):
ATTATAATTAAATAT
Found at i:1911788 original size:14 final size:15
Alignment explanation
Indices: 1911739--1911790 Score: 56
Period size: 15 Copynumber: 3.6 Consensus size: 15
1911729 ATAAAATATA
1911739 AATTAACATA-ATTAT
1 AATTAA-ATATATTAT
*
1911754 TATTAAATATATTAT
1 AATTAAATATATTAT
1911769 AATTAAA-ATA-TAT
1 AATTAAATATATTAT
*
1911782 AATTTAATA
1 AATTAAATA
1911791 AAATTCTTAA
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
13 9 0.28
14 7 0.22
15 16 0.50
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (15 bp):
AATTAAATATATTAT
Found at i:1916455 original size:13 final size:13
Alignment explanation
Indices: 1916437--1916462 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1916427 AAAGTGCGAG
1916437 CCTGTTGAAGACA
1 CCTGTTGAAGACA
1916450 CCTGTTGAAGACA
1 CCTGTTGAAGACA
1916463 ATATGCAAAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.23, G:0.23, T:0.23
Consensus pattern (13 bp):
CCTGTTGAAGACA
Found at i:1927030 original size:164 final size:166
Alignment explanation
Indices: 1926745--1927073 Score: 468
Period size: 164 Copynumber: 2.0 Consensus size: 166
1926735 TTCAAAACTC
* *
1926745 ACCTATTGGATGGTTGCGGTTGACAGGGTTAATGTTAGCTATTGATTTTTCTTAATTATAAAATT
1 ACCTATTGAATGGTTGCGGTTGACAGGGTTAATGTTAGCTACTGATTTTTCTTAATTATAAAATT
* * * *
1926810 TTGATTATACGATAAGTTATAACATTTCAACTTGTGAACATACTAAGCTTGTAAAAGCTTACTCA
66 ATGATTATACGATAAGTTATAACATTTCAACCTGTGAACATACTAAACTCGTAAAAGCTTACTCA
1926875 TG-T-TATTTTCCTTTTTTCTTGTAGATCTCATTTTG
131 TGCTGT-TTTTCCTTTTTTCTTGTAGATCTCATTTTG
* * *
1926910 ACCTGTTGAATGGTTGTGGTTGATAGGGTTAATGTTAGCTACTGA-TTTTCTTAATTAT-AAATA
1 ACCTATTGAATGGTTGCGGTTGACAGGGTTAATGTTAGCTACTGATTTTTCTTAATTATAAAAT-
* * *
1926973 TATGATTATACGATAAGTTATAACGTTTCAACCTGTGAACTTACTAAACTCGTAAAAGCTTGCTC
65 TATGATTATACGATAAGTTATAACATTTCAACCTGTGAACATACTAAACTCGTAAAAGCTTACTC
* * * *
1927038 GTGCTGTTTTTCTTTTTTTCTTGTAGGTCTCGTTTT
130 ATGCTGTTTTTCCTTTTTTCTTGTAGATCTCATTTT
1927074 TTGGAATTAG
Statistics
Matches: 145, Mismatches: 16, Indels: 6
0.87 0.10 0.04
Matches are distributed among these distances:
163 4 0.03
164 73 0.50
165 67 0.46
166 1 0.01
ACGTcount: A:0.26, C:0.13, G:0.17, T:0.44
Consensus pattern (166 bp):
ACCTATTGAATGGTTGCGGTTGACAGGGTTAATGTTAGCTACTGATTTTTCTTAATTATAAAATT
ATGATTATACGATAAGTTATAACATTTCAACCTGTGAACATACTAAACTCGTAAAAGCTTACTCA
TGCTGTTTTTCCTTTTTTCTTGTAGATCTCATTTTG
Found at i:1927835 original size:21 final size:21
Alignment explanation
Indices: 1927809--1927849 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
1927799 ATTTGGTATC
1927809 GATACTGAATACAAAAATATT
1 GATACTGAATACAAAAATATT
* * *
1927830 GATACTTATTACAAAGATAT
1 GATACTGAATACAAAAATAT
1927850 CAATACTTTG
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.49, C:0.10, G:0.10, T:0.32
Consensus pattern (21 bp):
GATACTGAATACAAAAATATT
Found at i:1936663 original size:18 final size:19
Alignment explanation
Indices: 1936640--1936677 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 19
1936630 GTGAAATTTG
1936640 ATTTTTTTA-TTTTACTTA
1 ATTTTTTTAGTTTTACTTA
*
1936658 ATTTTTTTAGTTTTATTTA
1 ATTTTTTTAGTTTTACTTA
1936677 A
1 A
1936678 CTTAGTTTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 9 0.50
19 9 0.50
ACGTcount: A:0.24, C:0.03, G:0.03, T:0.71
Consensus pattern (19 bp):
ATTTTTTTAGTTTTACTTA
Found at i:1942290 original size:5 final size:5
Alignment explanation
Indices: 1942276--1942312 Score: 58
Period size: 5 Copynumber: 7.6 Consensus size: 5
1942266 TATCTCTTGA
*
1942276 ATTTT A-TTT ATTTT ATTTT ATGTT ATTTT ATTTT ATT
1 ATTTT ATTTT ATTTT ATTTT ATTTT ATTTT ATTTT ATT
1942313 ATTCTAAAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
4 4 0.14
5 25 0.86
ACGTcount: A:0.22, C:0.00, G:0.03, T:0.76
Consensus pattern (5 bp):
ATTTT
Found at i:1942303 original size:15 final size:14
Alignment explanation
Indices: 1942276--1942312 Score: 65
Period size: 15 Copynumber: 2.6 Consensus size: 14
1942266 TATCTCTTGA
1942276 ATTTTATTTATTTT
1 ATTTTATTTATTTT
1942290 ATTTTATGTTATTTT
1 ATTTTAT-TTATTTT
1942305 ATTTTATT
1 ATTTTATT
1942313 ATTCTAAAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
14 8 0.36
15 14 0.64
ACGTcount: A:0.22, C:0.00, G:0.03, T:0.76
Consensus pattern (14 bp):
ATTTTATTTATTTT
Found at i:1949750 original size:27 final size:28
Alignment explanation
Indices: 1949683--1949881 Score: 168
Period size: 27 Copynumber: 7.4 Consensus size: 28
1949673 AAACCTTTGT
* *
1949683 AAAGGAAGACTTTGTGGCAATCTATGTA
1 AAAGGAAGCCTTTGTGGCTATCTATGTA
*
1949711 ATTA-G-AGCCTTTGTGGCTATCTAT-TA
1 A-AAGGAAGCCTTTGTGGCTATCTATGTA
* * *
1949737 AAAGGAAGCATTTGTGGGTACCCT-TGTA
1 AAAGGAAGCCTTTGTGGCTA-TCTATGTA
* * *
1949765 AAA-TAAGCCTTTGTGGCTATCCATG-C
1 AAAGGAAGCCTTTGTGGCTATCTATGTA
*
1949791 AAAGGAAGCCTTTGTGGCTACCTATGTA
1 AAAGGAAGCCTTTGTGGCTATCTATGTA
*
1949819 AAA--AAGGCCTTCGTGGCTATCTATGT-
1 AAAGGAA-GCCTTTGTGGCTATCTATGTA
* *
1949845 AAAGGAAG-CTTATGTGGCTAACCATGT-
1 AAAGGAAGCCTT-TGTGGCTATCTATGTA
1949872 AAAGGAAGCC
1 AAAGGAAGCC
1949882 CTTATGGCAA
Statistics
Matches: 136, Mismatches: 22, Indels: 26
0.74 0.12 0.14
Matches are distributed among these distances:
25 1 0.01
26 16 0.12
27 103 0.76
28 15 0.11
29 1 0.01
ACGTcount: A:0.30, C:0.17, G:0.24, T:0.29
Consensus pattern (28 bp):
AAAGGAAGCCTTTGTGGCTATCTATGTA
Found at i:1949874 original size:54 final size:53
Alignment explanation
Indices: 1949680--1949874 Score: 202
Period size: 54 Copynumber: 3.6 Consensus size: 53
1949670 GAAAAACCTT
* *
1949680 TGTAAAGGAAGACTTTGTGGC-AATCTATGT-AATTAGAGCCTTTGTGGCTATCTA
1 TGTAAAGGAAG-CTTTGTGGCTAA-CCATGTAAAATA-AGCCTTTGTGGCTATCTA
* * * *
1949734 T-TAAAAGGAAGCATTTGTGGGTACCCTTGTAAAATAAGCCTTTGTGGCTATCCA
1 TGT-AAAGGAAGC-TTTGTGGCTAACCATGTAAAATAAGCCTTTGTGGCTATCTA
* *
1949788 TGCAAAGGAAGCCTTTGTGGCT-ACCTATGTAAAA-AAGGCCTTCGTGGCTATCTA
1 TGTAAAGGAAG-CTTTGTGGCTAACC-ATGTAAAATAA-GCCTTTGTGGCTATCTA
1949842 TGTAAAGGAAGCTTATGTGGCTAACCATGTAAA
1 TGTAAAGGAAGCTT-TGTGGCTAACCATGTAAA
1949875 GGAAGCCCTT
Statistics
Matches: 118, Mismatches: 13, Indels: 20
0.78 0.09 0.13
Matches are distributed among these distances:
53 9 0.08
54 100 0.85
55 9 0.08
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.31
Consensus pattern (53 bp):
TGTAAAGGAAGCTTTGTGGCTAACCATGTAAAATAAGCCTTTGTGGCTATCTA
Found at i:1956295 original size:50 final size:50
Alignment explanation
Indices: 1956172--1956362 Score: 193
Period size: 50 Copynumber: 3.7 Consensus size: 50
1956162 GGTAAGTAGA
* *
1956172 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCATTGAGGTTATGAGAGG
1 TCCCACGTAAGACCATGTCTGGGACATGGCATTGGCA-C--CGA-G--ATGAGAGG
** * *
1956228 TCCCATTTAAGACCATGTATGGGACATGGCGTTGGCACCGAGATGAGAGG
1 TCCCACGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGG
* * * **
1956278 TCCCCCGTAAGACCATGTCTGGGACATGGCATGGGCACCGATATGAGAAC
1 TCCCACGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGG
* * * *
1956328 TCCCATGCAAGACCATATCTGGGATATGGCATTGG
1 TCCCACGTAAGACCATGTCTGGGACATGGCATTGG
1956363 TAGTACAAGA
Statistics
Matches: 116, Mismatches: 19, Indels: 6
0.82 0.13 0.04
Matches are distributed among these distances:
50 78 0.67
52 1 0.01
53 2 0.02
55 1 0.01
56 34 0.29
ACGTcount: A:0.26, C:0.22, G:0.29, T:0.23
Consensus pattern (50 bp):
TCCCACGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGG
Found at i:1956398 original size:49 final size:49
Alignment explanation
Indices: 1956228--1956413 Score: 160
Period size: 50 Copynumber: 3.8 Consensus size: 49
1956218 TTATGAGAGG
* * * * * * **
1956228 TCCCATTTAAGACCATGTATGGGACATGGCGTTGGCACCGAGATGAGAGG
1 TCCCATGTAAGACCATGTCTGGGATATGGCATTGGCA-CGACAAGAGAAC
** * * * *
1956278 TCCCCCGTAAGACCATGTCTGGGACATGGCATGGGCACCGATATGAGAAC
1 TCCCATGTAAGACCATGTCTGGGATATGGCATTGGCA-CGACAAGAGAAC
* * *
1956328 TCCCATGCAAGACCATATCTGGGATATGGCATTGGTA-GTACAAGA-AAC
1 TCCCATGTAAGACCATGTCTGGGATATGGCATTGGCACG-ACAAGAGAAC
*
1956376 TTCCCATGTAAGACCATGTCTGGGATATGGCTTTGGCA
1 -TCCCATGTAAGACCATGTCTGGGATATGGCATTGGCA
1956414 TGTTATTATC
Statistics
Matches: 112, Mismatches: 22, Indels: 5
0.81 0.16 0.04
Matches are distributed among these distances:
48 4 0.04
49 37 0.33
50 71 0.63
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (49 bp):
TCCCATGTAAGACCATGTCTGGGATATGGCATTGGCACGACAAGAGAAC
Found at i:1963127 original size:16 final size:15
Alignment explanation
Indices: 1963102--1963135 Score: 50
Period size: 16 Copynumber: 2.2 Consensus size: 15
1963092 AAAGTTGATA
*
1963102 ATAATTAATATATATT
1 ATAATAAATATA-ATT
1963118 ATAATAAATATAATT
1 ATAATAAATATAATT
1963133 ATA
1 ATA
1963136 TACTAGTTAG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 6 0.35
16 11 0.65
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (15 bp):
ATAATAAATATAATT
Found at i:1978225 original size:43 final size:43
Alignment explanation
Indices: 1978164--1978251 Score: 149
Period size: 43 Copynumber: 2.0 Consensus size: 43
1978154 TGACACATGA
1978164 CCGTGTTGCCAGGCCGTGTGTCTCACACGGTTGAGTCACACGG
1 CCGTGTTGCCAGGCCGTGTGTCTCACACGGTTGAGTCACACGG
* * *
1978207 CCGTGTTGCCAGGCCGTGTGTCTTACATGGTTGAGTCAGACGG
1 CCGTGTTGCCAGGCCGTGTGTCTCACACGGTTGAGTCACACGG
1978250 CC
1 CC
1978252 ATGTCTCAGG
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 42 1.00
ACGTcount: A:0.14, C:0.28, G:0.33, T:0.25
Consensus pattern (43 bp):
CCGTGTTGCCAGGCCGTGTGTCTCACACGGTTGAGTCACACGG
Found at i:1986855 original size:20 final size:20
Alignment explanation
Indices: 1986830--1986867 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
1986820 TGAGCTCACA
*
1986830 TGGCCCATTTCGGCCTAACG
1 TGGCCCATTACGGCCTAACG
1986850 TGGCCCATTACGGCCTAA
1 TGGCCCATTACGGCCTAA
1986868 GCCCATAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.18, C:0.34, G:0.24, T:0.24
Consensus pattern (20 bp):
TGGCCCATTACGGCCTAACG
Found at i:1988941 original size:13 final size:13
Alignment explanation
Indices: 1988923--1988954 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
1988913 GTTCGCATGG
1988923 CCGTGTCACACAC
1 CCGTGTCACACAC
*
1988936 CCGTGTCACACTC
1 CCGTGTCACACAC
1988949 CCGTGT
1 CCGTGT
1988955 GCCAGGCCGT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.16, C:0.44, G:0.19, T:0.22
Consensus pattern (13 bp):
CCGTGTCACACAC
Found at i:1991119 original size:33 final size:33
Alignment explanation
Indices: 1991082--1991188 Score: 169
Period size: 33 Copynumber: 3.2 Consensus size: 33
1991072 CTCTGTTTGG
*
1991082 TGTGTTGGTTGGATTAGCTCTTATGGGCATTGA
1 TGTGTTGGTTGGATTAGCTCTTATGAGCATTGA
*
1991115 TGTGTTGGTTGGATTAGCTCTTATGAGCATTGG
1 TGTGTTGGTTGGATTAGCTCTTATGAGCATTGA
** *
1991148 TGTGTTGGTTGGATTAAATCTTATAAGCATTGA
1 TGTGTTGGTTGGATTAGCTCTTATGAGCATTGA
1991181 TGTGTTGG
1 TGTGTTGG
1991189 AAGGATTGGC
Statistics
Matches: 68, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
33 68 1.00
ACGTcount: A:0.18, C:0.07, G:0.32, T:0.43
Consensus pattern (33 bp):
TGTGTTGGTTGGATTAGCTCTTATGAGCATTGA
Found at i:1991155 original size:66 final size:66
Alignment explanation
Indices: 1991078--1991227 Score: 194
Period size: 66 Copynumber: 2.3 Consensus size: 66
1991068 TACTCTCTGT
** ** **
1991078 TTGGTGTGTTGGTTGGATTAGCTCTTATGGGCATTGATGTGTTGGTTGGATTAGCTCT-TATGAG
1 TTGGTGTGTTGGTTGGATTAAATCTTATAAGCATTGATGTGTTGGAAGGATTAGCT-TGTATGAG
1991142 CA
65 CA
* *
1991144 TTGGTGTGTTGGTTGGATTAAATCTTATAAGCATTGATGTGTTGGAAGGATTGGCTTGTGTGAGC
1 TTGGTGTGTTGGTTGGATTAAATCTTATAAGCATTGATGTGTTGGAAGGATTAGCTTGTATGAGC
1991209 A
66 A
*
1991210 TCTGGTGAGTTGGTTGGA
1 T-TGGTGTGTTGGTTGGA
1991228 CTAACAATGT
Statistics
Matches: 73, Mismatches: 9, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
65 1 0.01
66 57 0.78
67 15 0.21
ACGTcount: A:0.17, C:0.07, G:0.35, T:0.41
Consensus pattern (66 bp):
TTGGTGTGTTGGTTGGATTAAATCTTATAAGCATTGATGTGTTGGAAGGATTAGCTTGTATGAGC
A
Found at i:2003592 original size:15 final size:15
Alignment explanation
Indices: 2003549--2003604 Score: 60
Period size: 15 Copynumber: 3.6 Consensus size: 15
2003539 TTAGGGTTAG
2003549 TTTTTTATATATATTA
1 TTTTTTATATATA-TA
**
2003565 TTTTCAATAATATATA
1 TTTTTTAT-ATATATA
2003581 TTTTTTATATAT-TGA
1 TTTTTTATATATAT-A
2003596 TTTTTTATA
1 TTTTTTATA
2003605 ATTTTTTGAG
Statistics
Matches: 34, Mismatches: 4, Indels: 5
0.79 0.09 0.12
Matches are distributed among these distances:
14 1 0.03
15 14 0.41
16 14 0.41
17 5 0.15
ACGTcount: A:0.32, C:0.02, G:0.02, T:0.64
Consensus pattern (15 bp):
TTTTTTATATATATA
Found at i:2006606 original size:28 final size:28
Alignment explanation
Indices: 2006547--2006656 Score: 96
Period size: 28 Copynumber: 4.0 Consensus size: 28
2006537 TTCAGAATTT
* * *
2006547 GCCACAAAGG-CATCCCTTTCAAAGGTC
1 GCCACAAAGGTTATTCCTTTCAAAGTTC
* * *
2006574 GCCACAAAGGTTATTCCTTTGAAATTTT
1 GCCACAAAGGTTATTCCTTTCAAAGTTC
* * * * *
2006602 TCCACACATGTCATTCCTTTCACAGTTC
1 GCCACAAAGGTTATTCCTTTCAAAGTTC
* *
2006630 GCCACAAAGGTTATTCTTTTCAGAGTT
1 GCCACAAAGGTTATTCCTTTCAAAGTT
2006657 ATCCAAAACG
Statistics
Matches: 62, Mismatches: 20, Indels: 1
0.75 0.24 0.01
Matches are distributed among these distances:
27 10 0.16
28 52 0.84
ACGTcount: A:0.26, C:0.26, G:0.15, T:0.33
Consensus pattern (28 bp):
GCCACAAAGGTTATTCCTTTCAAAGTTC
Found at i:2014631 original size:31 final size:32
Alignment explanation
Indices: 2014595--2014658 Score: 121
Period size: 32 Copynumber: 2.0 Consensus size: 32
2014585 CTTAGATAAT
2014595 TTTAAAGAG-TTTTATTAGGATTCAATTACTC
1 TTTAAAGAGTTTTTATTAGGATTCAATTACTC
2014626 TTTAAAGAGTTTTTATTAGGATTCAATTACTC
1 TTTAAAGAGTTTTTATTAGGATTCAATTACTC
2014658 T
1 T
2014659 AGTAATTTGC
Statistics
Matches: 32, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
31 9 0.28
32 23 0.72
ACGTcount: A:0.31, C:0.09, G:0.12, T:0.47
Consensus pattern (32 bp):
TTTAAAGAGTTTTTATTAGGATTCAATTACTC
Found at i:2016702 original size:50 final size:50
Alignment explanation
Indices: 2016627--2016729 Score: 152
Period size: 50 Copynumber: 2.1 Consensus size: 50
2016617 TTCATCAGAT
* *
2016627 TAACATCCCCCAGACATTGACATTTCTTCCACTCTCAAAGAAGTTCTTAC
1 TAACATCCCCCAGACATGGACATTTCTTCCACTCTCAAAGAAGCTCTTAC
* * * *
2016677 TAACATCCCCCGGACATGGACATTTCTTCTATTCTTAAAGAAGCTCTTAC
1 TAACATCCCCCAGACATGGACATTTCTTCCACTCTCAAAGAAGCTCTTAC
2016727 TAA
1 TAA
2016730 GGGAAAGACT
Statistics
Matches: 47, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
50 47 1.00
ACGTcount: A:0.30, C:0.29, G:0.10, T:0.31
Consensus pattern (50 bp):
TAACATCCCCCAGACATGGACATTTCTTCCACTCTCAAAGAAGCTCTTAC
Found at i:2019516 original size:28 final size:28
Alignment explanation
Indices: 2019479--2019547 Score: 84
Period size: 28 Copynumber: 2.5 Consensus size: 28
2019469 TTAGAGTTTT
* *
2019479 CCACACATGTTATTCCTTTCACAGTTCA
1 CCACAAATGTTATTACTTTCACAGTTCA
* * *
2019507 CCACAAATGTTATTATTTTCAGAGTTCT
1 CCACAAATGTTATTACTTTCACAGTTCA
*
2019535 CCACAAAGGTTAT
1 CCACAAATGTTAT
2019548 CTTAACTGTC
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 35 1.00
ACGTcount: A:0.29, C:0.25, G:0.10, T:0.36
Consensus pattern (28 bp):
CCACAAATGTTATTACTTTCACAGTTCA
Found at i:2023069 original size:27 final size:27
Alignment explanation
Indices: 2022999--2023175 Score: 184
Period size: 27 Copynumber: 6.7 Consensus size: 27
2022989 TATTCAGATT
*
2022999 GCCACAAGGGCTTCCTTTACATGGATA
1 GCCACAAAGGCTTCCTTTACATGGATA
* * *
2023026 GGCAC----GCTTCTTTTACATGGGTA
1 GCCACAAAGGCTTCCTTTACATGGATA
* * *
2023049 GCGAGAAAGGCTTCCTTTACATGAATA
1 GCCACAAAGGCTTCCTTTACATGGATA
* * *
2023076 GCCACAAAGGCTTCTTTTACAAGGGTA
1 GCCACAAAGGCTTCCTTTACATGGATA
2023103 GCCACAAAGGCTTCCTTTACATGGATA
1 GCCACAAAGGCTTCCTTTACATGGATA
* * *
2023130 GCCACAAAGGCTCCCATTACA-GAGATT
1 GCCACAAAGGCTTCCTTTACATG-GATA
*
2023157 GCCACAAAGTCTTCCTTTA
1 GCCACAAAGGCTTCCTTTA
2023176 TAGAGGTTTT
Statistics
Matches: 121, Mismatches: 24, Indels: 10
0.78 0.15 0.06
Matches are distributed among these distances:
23 18 0.15
26 1 0.01
27 102 0.84
ACGTcount: A:0.28, C:0.25, G:0.20, T:0.27
Consensus pattern (27 bp):
GCCACAAAGGCTTCCTTTACATGGATA
Found at i:2023150 original size:54 final size:54
Alignment explanation
Indices: 2022999--2023141 Score: 204
Period size: 54 Copynumber: 2.7 Consensus size: 54
2022989 TATTCAGATT
* * *
2022999 GCCACAAGGGCTTCCTTTACATGGATAGGCAC----GCTTCTTTTACATGGGTA
1 GCCACAAAGGCTTCCTTTACATGGATAGCCACAAAGGCTTCTTTTACAAGGGTA
* * *
2023049 GCGAGAAAGGCTTCCTTTACATGAATAGCCACAAAGGCTTCTTTTACAAGGGTA
1 GCCACAAAGGCTTCCTTTACATGGATAGCCACAAAGGCTTCTTTTACAAGGGTA
2023103 GCCACAAAGGCTTCCTTTACATGGATAGCCACAAAGGCT
1 GCCACAAAGGCTTCCTTTACATGGATAGCCACAAAGGCT
2023142 CCCATTACAG
Statistics
Matches: 80, Mismatches: 9, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
50 27 0.34
54 53 0.66
ACGTcount: A:0.28, C:0.24, G:0.22, T:0.26
Consensus pattern (54 bp):
GCCACAAAGGCTTCCTTTACATGGATAGCCACAAAGGCTTCTTTTACAAGGGTA
Found at i:2032085 original size:54 final size:54
Alignment explanation
Indices: 2032017--2032202 Score: 140
Period size: 54 Copynumber: 3.2 Consensus size: 54
2032007 TTATTAGTTA
* *
2032017 TAATTATTTTAAATTTTATTAAATCATATATTTTAATTAAAATATATTTAATAT
1 TAATTATTTAAAATTTTATTAAATAATATATTTTAATTAAAATATATTTAATAT
* * * * **
2032071 TAATTATTTCAAATTATCTTTTATAGTATAATATATTATGATTTGAGTAAATTCATATAAGAATA
1 TAATTATTTAAAATT-T-TATTA-A--ATAATATATT-TTAATT-A--AAA-T-ATAT-TTAATA
2032136 T
54 T
* * *
2032137 TAATTA-TTAAGAATTTTATTAAATTATATATTTTAATTATAATATATTTAATAA
1 TAATTATTTAA-AATTTTATTAAATAATATATTTTAATTAAAATATATTTAATAT
2032191 TAATTATGTTAA
1 TAATTAT-TTAA
2032203 TTTATATTTT
Statistics
Matches: 101, Mismatches: 16, Indels: 28
0.70 0.11 0.19
Matches are distributed among these distances:
54 24 0.24
55 5 0.05
56 9 0.09
57 3 0.03
59 10 0.10
60 8 0.08
61 10 0.10
63 4 0.04
64 5 0.05
65 8 0.08
66 15 0.15
ACGTcount: A:0.44, C:0.02, G:0.04, T:0.51
Consensus pattern (54 bp):
TAATTATTTAAAATTTTATTAAATAATATATTTTAATTAAAATATATTTAATAT
Found at i:2032188 original size:15 final size:15
Alignment explanation
Indices: 2032153--2032204 Score: 56
Period size: 15 Copynumber: 3.6 Consensus size: 15
2032143 TTAAGAATTT
*
2032153 TATTAAATTAT-ATA
1 TATTTAATTATAATA
2032167 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
2032181 TATTTAATAATAAT-
1 TATTTAATTATAATA
2032195 TATGTTAATT
1 TAT-TTAATT
2032205 TATATTTTAN
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
13 8 0.25
14 8 0.25
15 16 0.50
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:2032481 original size:18 final size:17
Alignment explanation
Indices: 2032453--2032487 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
2032443 NNNNNNNAGA
*
2032453 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
2032470 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
2032488 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:2032750 original size:16 final size:16
Alignment explanation
Indices: 2032729--2032790 Score: 88
Period size: 16 Copynumber: 3.9 Consensus size: 16
2032719 CTATTTCACA
* *
2032729 TCTATTCCATTACACC
1 TCTAATCCAATACACC
* *
2032745 TCTATTCCATTACACC
1 TCTAATCCAATACACC
2032761 TCTAATCCAATACACC
1 TCTAATCCAATACACC
2032777 TCTAATCCAATACA
1 TCTAATCCAATACA
2032791 GCGAACCAAA
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 44 1.00
ACGTcount: A:0.32, C:0.35, G:0.00, T:0.32
Consensus pattern (16 bp):
TCTAATCCAATACACC
Found at i:2036228 original size:16 final size:16
Alignment explanation
Indices: 2036207--2036255 Score: 89
Period size: 16 Copynumber: 3.1 Consensus size: 16
2036197 GTGACTTAAT
2036207 TGACTTATGCAGTATA
1 TGACTTATGCAGTATA
*
2036223 TGACTTAAGCAGTATA
1 TGACTTATGCAGTATA
2036239 TGACTTATGCAGTATA
1 TGACTTATGCAGTATA
2036255 T
1 T
2036256 AATAATTGAC
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 31 1.00
ACGTcount: A:0.33, C:0.12, G:0.18, T:0.37
Consensus pattern (16 bp):
TGACTTATGCAGTATA
Found at i:2050118 original size:42 final size:42
Alignment explanation
Indices: 2050069--2050301 Score: 297
Period size: 42 Copynumber: 5.6 Consensus size: 42
2050059 AACTTGAGAC
* * **
2050069 TTCAGACTTTACGCCTAGCAGGCTTATTGCTAGTGAAACAAT
1 TTCAGACTTTACGTCTAGCAGGCTTAATGCCGGTGAAACAAT
* * *
2050111 ATCAGACTTTACGTCTAGAAGGCTTAATGCCGGTGAAATAAT
1 TTCAGACTTTACGTCTAGCAGGCTTAATGCCGGTGAAACAAT
* * * * *
2050153 TTTAGACGTTACGTCTAGCAGGCTTATTGGCAGTGAAACAAT
1 TTCAGACTTTACGTCTAGCAGGCTTAATGCCGGTGAAACAAT
* * *
2050195 ATCAGACTTTACGTCTAGCAGGCTTAATGCTGGTGAAATAAT
1 TTCAGACTTTACGTCTAGCAGGCTTAATGCCGGTGAAACAAT
*
2050237 TTCAGACTTTACGTCTAGTAGGCTTAATGCCGGTGAAAC-AT
1 TTCAGACTTTACGTCTAGCAGGCTTAATGCCGGTGAAACAAT
* *
2050278 TTCAGACTATATGTCTAGCAGGCT
1 TTCAGACTTTACGTCTAGCAGGCT
2050302 AAGCGCCAGT
Statistics
Matches: 161, Mismatches: 30, Indels: 1
0.84 0.16 0.01
Matches are distributed among these distances:
41 23 0.14
42 138 0.86
ACGTcount: A:0.29, C:0.18, G:0.21, T:0.31
Consensus pattern (42 bp):
TTCAGACTTTACGTCTAGCAGGCTTAATGCCGGTGAAACAAT
Found at i:2050218 original size:84 final size:84
Alignment explanation
Indices: 2050069--2050301 Score: 335
Period size: 84 Copynumber: 2.8 Consensus size: 84
2050059 AACTTGAGAC
* *
2050069 TTCAGACTTTACGCCTAGCAGGCTTATT-GCTAGTGAAACAATATCAGACTTTACGTCTAGAAGG
1 TTCAGACTTTACGTCTAGCAGGCTTATTGGC-AGTGAAACAATATCAGACTTTACGTCTAGCAGG
2050133 CTTAATGCCGGTGAAATAAT
65 CTTAATGCCGGTGAAATAAT
* *
2050153 TTTAGACGTTACGTCTAGCAGGCTTATTGGCAGTGAAACAATATCAGACTTTACGTCTAGCAGGC
1 TTCAGACTTTACGTCTAGCAGGCTTATTGGCAGTGAAACAATATCAGACTTTACGTCTAGCAGGC
*
2050218 TTAATGCTGGTGAAATAAT
66 TTAATGCCGGTGAAATAAT
* * * * * * *
2050237 TTCAGACTTTACGTCTAGTAGGCTTAATGCCGGTGAAAC-ATTTCAGACTATATGTCTAGCAGGC
1 TTCAGACTTTACGTCTAGCAGGCTTATTGGCAGTGAAACAATATCAGACTTTACGTCTAGCAGGC
2050301 T
66 T
2050302 AAGCGCCAGT
Statistics
Matches: 134, Mismatches: 14, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
83 23 0.17
84 109 0.81
85 2 0.01
ACGTcount: A:0.29, C:0.18, G:0.21, T:0.31
Consensus pattern (84 bp):
TTCAGACTTTACGTCTAGCAGGCTTATTGGCAGTGAAACAATATCAGACTTTACGTCTAGCAGGC
TTAATGCCGGTGAAATAAT
Found at i:2053064 original size:17 final size:17
Alignment explanation
Indices: 2053042--2053074 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
2053032 TAGAATTGGG
2053042 TTGAGAAGATT-ATTTAA
1 TTGAGAA-ATTAATTTAA
2053059 TTGAGAAATTAATTTA
1 TTGAGAAATTAATTTA
2053075 GTTAATTTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 3 0.20
17 12 0.80
ACGTcount: A:0.42, C:0.00, G:0.15, T:0.42
Consensus pattern (17 bp):
TTGAGAAATTAATTTAA
Found at i:2053081 original size:9 final size:9
Alignment explanation
Indices: 2053065--2053099 Score: 52
Period size: 9 Copynumber: 3.9 Consensus size: 9
2053055 TTAATTGAGA
2053065 AATTAATTT
1 AATTAATTT
*
2053074 AGTTAATTT
1 AATTAATTT
*
2053083 AATTAATTA
1 AATTAATTT
2053092 AATTAATT
1 AATTAATT
2053100 GATTAAATAA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
9 23 1.00
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51
Consensus pattern (9 bp):
AATTAATTT
Found at i:2053092 original size:13 final size:13
Alignment explanation
Indices: 2053064--2053112 Score: 53
Period size: 13 Copynumber: 3.7 Consensus size: 13
2053054 TTTAATTGAG
*
2053064 AAATTAATTTAGTT
1 AAATTAA-TTAATT
*
2053078 AATTTAATTAATT
1 AAATTAATTAATT
*
2053091 AAATTAATTGATT
1 AAATTAATTAATT
*
2053104 AAATAAATT
1 AAATTAATT
2053113 TATTTTGGGT
Statistics
Matches: 30, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
13 24 0.80
14 6 0.20
ACGTcount: A:0.49, C:0.00, G:0.04, T:0.47
Consensus pattern (13 bp):
AAATTAATTAATT
Found at i:2055051 original size:17 final size:17
Alignment explanation
Indices: 2055029--2055063 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
2055019 ATAATGAAGT
2055029 AGAAAAATATCACTTAA
1 AGAAAAATATCACTTAA
2055046 AGAAAAATATCACTTAA
1 AGAAAAATATCACTTAA
2055063 A
1 A
2055064 ATAATTATTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.60, C:0.11, G:0.06, T:0.23
Consensus pattern (17 bp):
AGAAAAATATCACTTAA
Found at i:2061177 original size:57 final size:58
Alignment explanation
Indices: 2061089--2061211 Score: 167
Period size: 57 Copynumber: 2.1 Consensus size: 58
2061079 AGGTCATTTA
* * * *
2061089 CATTTTCATTTTCATTGTGGAGAAAACCATAATTATTTCCAAATGATT-TCACTTCTT
1 CATTTTCATTTGCATTGTGGAAAAAACCATAATCATTTCCAAATGATTCTCACTTCTC
* * * *
2061146 CATTTTCATTTGCATTTTGGAAAAAATCATAATCATTTCCAAATGTTTCTCATTTCTC
1 CATTTTCATTTGCATTGTGGAAAAAACCATAATCATTTCCAAATGATTCTCACTTCTC
2061204 CATTTTCA
1 CATTTTCA
2061212 CCATTTATAT
Statistics
Matches: 57, Mismatches: 8, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
57 42 0.74
58 15 0.26
ACGTcount: A:0.29, C:0.19, G:0.07, T:0.45
Consensus pattern (58 bp):
CATTTTCATTTGCATTGTGGAAAAAACCATAATCATTTCCAAATGATTCTCACTTCTC
Found at i:2065018 original size:7 final size:7
Alignment explanation
Indices: 2065006--2065044 Score: 51
Period size: 7 Copynumber: 5.6 Consensus size: 7
2064996 TCTTCTCAAA
2065006 TCATCCC
1 TCATCCC
2065013 TCATCCC
1 TCATCCC
2065020 TCATCCC
1 TCATCCC
* *
2065027 TCAACAC
1 TCATCCC
*
2065034 TCATCTC
1 TCATCCC
2065041 TCAT
1 TCAT
2065045 TCATTCTCTC
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
7 28 1.00
ACGTcount: A:0.21, C:0.49, G:0.00, T:0.31
Consensus pattern (7 bp):
TCATCCC
Found at i:2068702 original size:24 final size:24
Alignment explanation
Indices: 2068666--2068738 Score: 85
Period size: 24 Copynumber: 3.0 Consensus size: 24
2068656 TGCAATCGAT
*
2068666 AGGGTGAATAGAGGAGCTATGGAA
1 AGGGTGAAGAGAGGAGCTATGGAA
*
2068690 AGGGTGAAGAGAGGAAC-AGTGGAA
1 AGGGTGAAGAGAGGAGCTA-TGGAA
* * *
2068714 AGGTTGAAGGGAGGAGCTGTGGAA
1 AGGGTGAAGAGAGGAGCTATGGAA
2068738 A
1 A
2068739 ATGTCTTACC
Statistics
Matches: 41, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
23 1 0.02
24 40 0.98
ACGTcount: A:0.37, C:0.04, G:0.45, T:0.14
Consensus pattern (24 bp):
AGGGTGAAGAGAGGAGCTATGGAA
Found at i:2070012 original size:38 final size:39
Alignment explanation
Indices: 2069960--2070042 Score: 114
Period size: 39 Copynumber: 2.2 Consensus size: 39
2069950 ATTTGCCGGC
* *
2069960 TTACTGATTAGGCAC-TTATGTGCCGACTACTGTTACTG
1 TTACTGATTAGGCACTTTATGTGCCGAATACTGTTACTA
* * *
2069998 TTACTGATTCGGCACTTTGTGTGTCGAATACTGTTACTA
1 TTACTGATTAGGCACTTTATGTGCCGAATACTGTTACTA
2070037 TTACTG
1 TTACTG
2070043 TTACTGTTAC
Statistics
Matches: 39, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
38 14 0.36
39 25 0.64
ACGTcount: A:0.20, C:0.19, G:0.20, T:0.40
Consensus pattern (39 bp):
TTACTGATTAGGCACTTTATGTGCCGAATACTGTTACTA
Found at i:2070040 original size:6 final size:6
Alignment explanation
Indices: 2070026--2070064 Score: 60
Period size: 6 Copynumber: 6.5 Consensus size: 6
2070016 GTGTGTCGAA
* *
2070026 TACTGT TACTAT TACTGT TACTGT TACTAT TACTGT TAC
1 TACTGT TACTGT TACTGT TACTGT TACTGT TACTGT TAC
2070065 CGACTCGGCA
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
6 29 1.00
ACGTcount: A:0.23, C:0.18, G:0.10, T:0.49
Consensus pattern (6 bp):
TACTGT
Found at i:2070049 original size:18 final size:18
Alignment explanation
Indices: 2070026--2070064 Score: 78
Period size: 18 Copynumber: 2.2 Consensus size: 18
2070016 GTGTGTCGAA
2070026 TACTGTTACTATTACTGT
1 TACTGTTACTATTACTGT
2070044 TACTGTTACTATTACTGT
1 TACTGTTACTATTACTGT
2070062 TAC
1 TAC
2070065 CGACTCGGCA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.23, C:0.18, G:0.10, T:0.49
Consensus pattern (18 bp):
TACTGTTACTATTACTGT
Found at i:2070074 original size:63 final size:63
Alignment explanation
Indices: 2069987--2070286 Score: 435
Period size: 57 Copynumber: 5.0 Consensus size: 63
2069977 ATGTGCCGAC
*
2069987 TACTGTTACTGTTACTGATTCGGCACTTTGTGTGTCGAATACTGTTACTATTACTGTTACTGT
1 TACTGTTACTGTTACCGATTCGGCACTTTGTGTGTCGAATACTGTTACTATTACTGTTACTGT
* *
2070050 TACTATTACTGTTACCGACTCGGCACTTTGTGTGTCG-A-A----TACTATTACTGTTACTGT
1 TACTGTTACTGTTACCGATTCGGCACTTTGTGTGTCGAATACTGTTACTATTACTGTTACTGT
*
2070107 TACTGTTACTGTTATCGATTCGGCACTTTGTGTGTCGAATACTGTTACTATTACTGTTACTGT
1 TACTGTTACTGTTACCGATTCGGCACTTTGTGTGTCGAATACTGTTACTATTACTGTTACTGT
* *
2070170 TACTATTACTGTTACCGACTCGGCACTTTGTGTGTCG-A-A----TACTATTACTGTTACTGT
1 TACTGTTACTGTTACCGATTCGGCACTTTGTGTGTCGAATACTGTTACTATTACTGTTACTGT
* **
2070227 TACTGTTACTGTTATCGATTCGGCACTTTGTGTGTCGAATACTGTTACCGTTACTGTTAC
1 TACTGTTACTGTTACCGATTCGGCACTTTGTGTGTCGAATACTGTTACTATTACTGTTAC
2070287 AGATTCAGCA
Statistics
Matches: 211, Mismatches: 14, Indels: 24
0.85 0.06 0.10
Matches are distributed among these distances:
57 104 0.49
58 2 0.01
59 2 0.01
61 2 0.01
62 2 0.01
63 99 0.47
ACGTcount: A:0.20, C:0.19, G:0.19, T:0.42
Consensus pattern (63 bp):
TACTGTTACTGTTACCGATTCGGCACTTTGTGTGTCGAATACTGTTACTATTACTGTTACTGT
Found at i:2070103 original size:6 final size:6
Alignment explanation
Indices: 2070089--2070120 Score: 55
Period size: 6 Copynumber: 5.3 Consensus size: 6
2070079 GTGTGTCGAA
*
2070089 TACTAT TACTGT TACTGT TACTGT TACTGT TA
1 TACTGT TACTGT TACTGT TACTGT TACTGT TA
2070121 TCGATTCGGC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.22, C:0.16, G:0.12, T:0.50
Consensus pattern (6 bp):
TACTGT
Found at i:2070160 original size:6 final size:6
Alignment explanation
Indices: 2070146--2070184 Score: 60
Period size: 6 Copynumber: 6.5 Consensus size: 6
2070136 GTGTGTCGAA
* *
2070146 TACTGT TACTAT TACTGT TACTGT TACTAT TACTGT TAC
1 TACTGT TACTGT TACTGT TACTGT TACTGT TACTGT TAC
2070185 CGACTCGGCA
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
6 29 1.00
ACGTcount: A:0.23, C:0.18, G:0.10, T:0.49
Consensus pattern (6 bp):
TACTGT
Found at i:2070169 original size:18 final size:18
Alignment explanation
Indices: 2070146--2070184 Score: 78
Period size: 18 Copynumber: 2.2 Consensus size: 18
2070136 GTGTGTCGAA
2070146 TACTGTTACTATTACTGT
1 TACTGTTACTATTACTGT
2070164 TACTGTTACTATTACTGT
1 TACTGTTACTATTACTGT
2070182 TAC
1 TAC
2070185 CGACTCGGCA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.23, C:0.18, G:0.10, T:0.49
Consensus pattern (18 bp):
TACTGTTACTATTACTGT
Found at i:2070194 original size:120 final size:120
Alignment explanation
Indices: 2069987--2070286 Score: 566
Period size: 120 Copynumber: 2.5 Consensus size: 120
2069977 ATGTGCCGAC
2069987 TACTGTTACTGTTA-CTGATTCGGCACTTTGTGTGTCGAATACTGTTACTATTACTGTTACTGTT
1 TACTGTTACTGTTATC-GATTCGGCACTTTGTGTGTCGAATACTGTTACTATTACTGTTACTGTT
2070051 ACTATTACTGTTACCGACTCGGCACTTTGTGTGTCGAATACTATTACTGTTACTGT
65 ACTATTACTGTTACCGACTCGGCACTTTGTGTGTCGAATACTATTACTGTTACTGT
2070107 TACTGTTACTGTTATCGATTCGGCACTTTGTGTGTCGAATACTGTTACTATTACTGTTACTGTTA
1 TACTGTTACTGTTATCGATTCGGCACTTTGTGTGTCGAATACTGTTACTATTACTGTTACTGTTA
2070172 CTATTACTGTTACCGACTCGGCACTTTGTGTGTCGAATACTATTACTGTTACTGT
66 CTATTACTGTTACCGACTCGGCACTTTGTGTGTCGAATACTATTACTGTTACTGT
**
2070227 TACTGTTACTGTTATCGATTCGGCACTTTGTGTGTCGAATACTGTTACCGTTACTGTTAC
1 TACTGTTACTGTTATCGATTCGGCACTTTGTGTGTCGAATACTGTTACTATTACTGTTAC
2070287 AGATTCAGCA
Statistics
Matches: 177, Mismatches: 2, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
120 176 0.99
121 1 0.01
ACGTcount: A:0.20, C:0.19, G:0.19, T:0.42
Consensus pattern (120 bp):
TACTGTTACTGTTATCGATTCGGCACTTTGTGTGTCGAATACTGTTACTATTACTGTTACTGTTA
CTATTACTGTTACCGACTCGGCACTTTGTGTGTCGAATACTATTACTGTTACTGT
Found at i:2070223 original size:6 final size:6
Alignment explanation
Indices: 2070209--2070240 Score: 55
Period size: 6 Copynumber: 5.3 Consensus size: 6
2070199 GTGTGTCGAA
*
2070209 TACTAT TACTGT TACTGT TACTGT TACTGT TA
1 TACTGT TACTGT TACTGT TACTGT TACTGT TA
2070241 TCGATTCGGC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.22, C:0.16, G:0.12, T:0.50
Consensus pattern (6 bp):
TACTGT
Found at i:2070270 original size:45 final size:45
Alignment explanation
Indices: 2070221--2070336 Score: 162
Period size: 45 Copynumber: 2.6 Consensus size: 45
2070211 CTATTACTGT
*
2070221 TACTGTTACTGTTACTGTTATC-GATTCGGCACTTTGTGTGTCGAA
1 TACTGTTACTGTTACTGTTA-CAGATTCAGCACTTTGTGTGTCGAA
* *
2070266 TACTGTTACCGTTACTGTTACAGATTCAGCACTTTGTGTGTTGAA
1 TACTGTTACTGTTACTGTTACAGATTCAGCACTTTGTGTGTCGAA
* * *
2070311 TACTGTTACTGCTACCGTTACTGATT
1 TACTGTTACTGTTACTGTTACAGATT
2070337 ACTGTATACT
Statistics
Matches: 63, Mismatches: 7, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
44 1 0.02
45 62 0.98
ACGTcount: A:0.20, C:0.19, G:0.20, T:0.41
Consensus pattern (45 bp):
TACTGTTACTGTTACTGTTACAGATTCAGCACTTTGTGTGTCGAA
Found at i:2079153 original size:883 final size:883
Alignment explanation
Indices: 2077448--2079213 Score: 3532
Period size: 883 Copynumber: 2.0 Consensus size: 883
2077438 GTAAAGAAAA
2077448 TTGAAGAGACAAGACGGTTGTAGTCTTTTAAGACTGATTGGGCAGGTAGAACGGTCAACATTTAT
1 TTGAAGAGACAAGACGGTTGTAGTCTTTTAAGACTGATTGGGCAGGTAGAACGGTCAACATTTAT
2077513 TAGAATCAGATTTTGTTTCCTTTTTCATTTTTCTAGGAGATTAGGTTTCCAATTTCTGTCAATTA
66 TAGAATCAGATTTTGTTTCCTTTTTCATTTTTCTAGGAGATTAGGTTTCCAATTTCTGTCAATTA
2077578 GCTTTCTTTTTGCTGGGCTCAGTTGTTTTACTGGGCCCGTTTGTTGTTTTTTCTAGGATCTTAAG
131 GCTTTCTTTTTGCTGGGCTCAGTTGTTTTACTGGGCCCGTTTGTTGTTTTTTCTAGGATCTTAAG
2077643 TGTAACATTTATTTTTCTTTTAAAATAAAGCCCAATCTGAAATTTATTTCAAAAAAAAAAGAAAT
196 TGTAACATTTATTTTTCTTTTAAAATAAAGCCCAATCTGAAATTTATTTCAAAAAAAAAAGAAAT
2077708 ATACTGTCAGAAAAATTATACCAACGGAGCCGTTGGTATAGGGTTCTTGCAACAAATTGTTTTTT
261 ATACTGTCAGAAAAATTATACCAACGGAGCCGTTGGTATAGGGTTCTTGCAACAAATTGTTTTTT
2077773 TAGTGTAAGAGCATGTCATGTAAACTTTTTTTAAATGAAAATTGGCCTTGAGGTAATGTGTATCT
326 TAGTGTAAGAGCATGTCATGTAAACTTTTTTTAAATGAAAATTGGCCTTGAGGTAATGTGTATCT
2077838 TGTTTAGAAATTTCAGCTACCCACTAAAACAAAAAGCACCTTAAATGTCAAAGTAATAATTGAGT
391 TGTTTAGAAATTTCAGCTACCCACTAAAACAAAAAGCACCTTAAATGTCAAAGTAATAATTGAGT
2077903 ACAAGTTTGAGCGCTAAATAATGCATTAACCGTTTTTTTGTTTTATAGGAGAGGTGATAGTTGGA
456 ACAAGTTTGAGCGCTAAATAATGCATTAACCGTTTTTTTGTTTTATAGGAGAGGTGATAGTTGGA
2077968 CTAATTTGGTTAACGGAGATATAATTTAAGTACCACTTGTAACCAAAAATAGAGTTTATGTCTAA
521 CTAATTTGGTTAACGGAGATATAATTTAAGTACCACTTGTAACCAAAAATAGAGTTTATGTCTAA
2078033 AATTTGTCTAAAATCAAACCCCATTTAAAGAGTTCAAATGAAAAGTTTTATTCAAGGCATATTTA
586 AATTTGTCTAAAATCAAACCCCATTTAAAGAGTTCAAATGAAAAGTTTTATTCAAGGCATATTTA
2078098 AAAACATTAATAGTGATTGGAGAACTAAGAGACGACAATGGTATGAAAGACAATGAACAAAAAAC
651 AAAACATTAATAGTGATTGGAGAACTAAGAGACGACAATGGTATGAAAGACAATGAACAAAAAAC
2078163 GGTAGAACTAGCAAAAAAAAGTAGGGTTTAGAGACGAAAAAAAGTTTAACCAGTATTGATACGGT
716 GGTAGAACTAGCAAAAAAAAGTAGGGTTTAGAGACGAAAAAAAGTTTAACCAGTATTGATACGGT
2078228 TGTTGACGGTTAGAACTGAAATCAAGTCTCCTTTAGTGACGCAACTCCTAAGTCTCTCGTATAGG
781 TGTTGACGGTTAGAACTGAAATCAAGTCTCCTTTAGTGACGCAACTCCTAAGTCTCTCGTATAGG
2078293 GATAAAGCCAACAAGACAAATAGTGAGGAAGATTCTAT
846 GATAAAGCCAACAAGACAAATAGTGAGGAAGATTCTAT
2078331 TTGAAGAGACAAGACGGTTGTAGTCTTTTAAGACTGATTGGGCAGGTAGAACGGTCAACATTTAT
1 TTGAAGAGACAAGACGGTTGTAGTCTTTTAAGACTGATTGGGCAGGTAGAACGGTCAACATTTAT
2078396 TAGAATCAGATTTTGTTTCCTTTTTCATTTTTCTAGGAGATTAGGTTTCCAATTTCTGTCAATTA
66 TAGAATCAGATTTTGTTTCCTTTTTCATTTTTCTAGGAGATTAGGTTTCCAATTTCTGTCAATTA
2078461 GCTTTCTTTTTGCTGGGCTCAGTTGTTTTACTGGGCCCGTTTGTTGTTTTTTCTAGGATCTTAAG
131 GCTTTCTTTTTGCTGGGCTCAGTTGTTTTACTGGGCCCGTTTGTTGTTTTTTCTAGGATCTTAAG
2078526 TGTAACATTTATTTTTCTTTTAAAATAAAGCCCAATCTGAAATTTATTTCAAAAAAAAAAGAAAT
196 TGTAACATTTATTTTTCTTTTAAAATAAAGCCCAATCTGAAATTTATTTCAAAAAAAAAAGAAAT
2078591 ATACTGTCAGAAAAATTATACCAACGGAGCCGTTGGTATAGGGTTCTTGCAACAAATTGTTTTTT
261 ATACTGTCAGAAAAATTATACCAACGGAGCCGTTGGTATAGGGTTCTTGCAACAAATTGTTTTTT
2078656 TAGTGTAAGAGCATGTCATGTAAACTTTTTTTAAATGAAAATTGGCCTTGAGGTAATGTGTATCT
326 TAGTGTAAGAGCATGTCATGTAAACTTTTTTTAAATGAAAATTGGCCTTGAGGTAATGTGTATCT
2078721 TGTTTAGAAATTTCAGCTACCCACTAAAACAAAAAGCACCTTAAATGTCAAAGTAATAATTGAGT
391 TGTTTAGAAATTTCAGCTACCCACTAAAACAAAAAGCACCTTAAATGTCAAAGTAATAATTGAGT
2078786 ACAAGTTTGAGCGCTAAATAATGCATTAACCGTTTTTTTGTTTTATAGGAGAGGTGATAGTTGGA
456 ACAAGTTTGAGCGCTAAATAATGCATTAACCGTTTTTTTGTTTTATAGGAGAGGTGATAGTTGGA
2078851 CTAATTTGGTTAACGGAGATATAATTTAAGTACCACTTGTAACCAAAAATAGAGTTTATGTCTAA
521 CTAATTTGGTTAACGGAGATATAATTTAAGTACCACTTGTAACCAAAAATAGAGTTTATGTCTAA
2078916 AATTTGTCTAAAATCAAACCCCATTTAAAGAGTTCAAATGAAAAGTTTTATTCAAGGCATATTTA
586 AATTTGTCTAAAATCAAACCCCATTTAAAGAGTTCAAATGAAAAGTTTTATTCAAGGCATATTTA
2078981 AAAACATTAATAGTGATTGGAGAACTAAGAGACGACAATGGTATGAAAGACAATGAACAAAAAAC
651 AAAACATTAATAGTGATTGGAGAACTAAGAGACGACAATGGTATGAAAGACAATGAACAAAAAAC
2079046 GGTAGAACTAGCAAAAAAAAGTAGGGTTTAGAGACGAAAAAAAGTTTAACCAGTATTGATACGGT
716 GGTAGAACTAGCAAAAAAAAGTAGGGTTTAGAGACGAAAAAAAGTTTAACCAGTATTGATACGGT
2079111 TGTTGACGGTTAGAACTGAAATCAAGTCTCCTTTAGTGACGCAACTCCTAAGTCTCTCGTATAGG
781 TGTTGACGGTTAGAACTGAAATCAAGTCTCCTTTAGTGACGCAACTCCTAAGTCTCTCGTATAGG
2079176 GATAAAGCCAACAAGACAAATAGTGAGGAAGATTCTAT
846 GATAAAGCCAACAAGACAAATAGTGAGGAAGATTCTAT
2079214 CAATTTATTA
Statistics
Matches: 883, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
883 883 1.00
ACGTcount: A:0.35, C:0.13, G:0.19, T:0.33
Consensus pattern (883 bp):
TTGAAGAGACAAGACGGTTGTAGTCTTTTAAGACTGATTGGGCAGGTAGAACGGTCAACATTTAT
TAGAATCAGATTTTGTTTCCTTTTTCATTTTTCTAGGAGATTAGGTTTCCAATTTCTGTCAATTA
GCTTTCTTTTTGCTGGGCTCAGTTGTTTTACTGGGCCCGTTTGTTGTTTTTTCTAGGATCTTAAG
TGTAACATTTATTTTTCTTTTAAAATAAAGCCCAATCTGAAATTTATTTCAAAAAAAAAAGAAAT
ATACTGTCAGAAAAATTATACCAACGGAGCCGTTGGTATAGGGTTCTTGCAACAAATTGTTTTTT
TAGTGTAAGAGCATGTCATGTAAACTTTTTTTAAATGAAAATTGGCCTTGAGGTAATGTGTATCT
TGTTTAGAAATTTCAGCTACCCACTAAAACAAAAAGCACCTTAAATGTCAAAGTAATAATTGAGT
ACAAGTTTGAGCGCTAAATAATGCATTAACCGTTTTTTTGTTTTATAGGAGAGGTGATAGTTGGA
CTAATTTGGTTAACGGAGATATAATTTAAGTACCACTTGTAACCAAAAATAGAGTTTATGTCTAA
AATTTGTCTAAAATCAAACCCCATTTAAAGAGTTCAAATGAAAAGTTTTATTCAAGGCATATTTA
AAAACATTAATAGTGATTGGAGAACTAAGAGACGACAATGGTATGAAAGACAATGAACAAAAAAC
GGTAGAACTAGCAAAAAAAAGTAGGGTTTAGAGACGAAAAAAAGTTTAACCAGTATTGATACGGT
TGTTGACGGTTAGAACTGAAATCAAGTCTCCTTTAGTGACGCAACTCCTAAGTCTCTCGTATAGG
GATAAAGCCAACAAGACAAATAGTGAGGAAGATTCTAT
Done.