Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: scaffold157
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1658850
ACGTcount: A:0.32, C:0.16, G:0.17, T:0.32
Warning! 45522 characters in sequence are not A, C, G, or T
File 1 of 5
Found at i:1223 original size:114 final size:114
Alignment explanation
Indices: 1023--1550 Score: 914
Period size: 114 Copynumber: 4.6 Consensus size: 114
1013 NNNNNNNNNN
1023 ACTATACCTCAATCTTGTACGCTGCGTTTTGTTTAACATTTTTTGCGGCGCTTACAAACAAACGC
1 ACTATACCTCAATCTTGTACGCTGCGTTTTGTTTAACATTTTTTGCGGCGCTTACAAACAAACGC
*
1088 CTCTAATGATACACTTCAGCGGCGTTTTTACAGAAACGCCACCAATTCT
66 CGCTAATGATACACTTCAGCGGCGTTTTTACAGAAACGCCACCAATTCT
*
1137 ACTATACCTCAATCTTGTACGCTGCGTTTTGTTTAACATTTTTTGCGGCGCTTACAAACAAATGC
1 ACTATACCTCAATCTTGTACGCTGCGTTTTGTTTAACATTTTTTGCGGCGCTTACAAACAAACGC
1202 CGCTAATGATACACTTCAGCGGCGTTTTTACAGAAACGCCACCAATTCT
66 CGCTAATGATACACTTCAGCGGCGTTTTTACAGAAACGCCACCAATTCT
*
1251 ACTATACCTCAATCTTGTACGCTGCGTTTTGTTTAACATTTTTTGCTGCGCTTACAAACAAACGC
1 ACTATACCTCAATCTTGTACGCTGCGTTTTGTTTAACATTTTTTGCGGCGCTTACAAACAAACGC
* * * *
1316 CGCTAATGATCCACTTTAGCAGTGTTTTTACAGAAACGCCACCAATTCT
66 CGCTAATGATACACTTCAGCGGCGTTTTTACAGAAACGCCACCAATTCT
* * * * *
1365 GCTATACCTCAAACTTGTACGCTGCGTTTTGTTTAACATTTTTTGCGGCGCTTATAAAAAAACGG
1 ACTATACCTCAATCTTGTACGCTGCGTTTTGTTTAACATTTTTTGCGGCGCTTACAAACAAACGC
1430 CGCTAATGATACACTTCAGCGGCGTTTTTACAGAAACGCCACCAATTCT
66 CGCTAATGATACACTTCAGCGGCGTTTTTACAGAAACGCCACCAATTCT
* * *
1479 GCTATACCTCAAACTTGTACGCTGCGTTTTGTTTAACA-TTGTTGCGGCGCTTACAAACAAACGC
1 ACTATACCTCAATCTTGTACGCTGCGTTTTGTTTAACATTTTTTGCGGCGCTTACAAACAAACGC
1543 CGCTAATG
66 CGCTAATG
1551 CCACTATTCC
Statistics
Matches: 392, Mismatches: 22, Indels: 1
0.94 0.05 0.00
Matches are distributed among these distances:
113 30 0.08
114 362 0.92
ACGTcount: A:0.26, C:0.25, G:0.16, T:0.32
Consensus pattern (114 bp):
ACTATACCTCAATCTTGTACGCTGCGTTTTGTTTAACATTTTTTGCGGCGCTTACAAACAAACGC
CGCTAATGATACACTTCAGCGGCGTTTTTACAGAAACGCCACCAATTCT
Found at i:1632 original size:110 final size:110
Alignment explanation
Indices: 1486--1706 Score: 415
Period size: 110 Copynumber: 2.0 Consensus size: 110
1476 TCTGCTATAC
1486 CTCAAACTTGTACGCTGCGTTTTGTTTAACATTGTTGCGGCGCTTACAAACAAACGCCGCTAATG
1 CTCAAACTTGTACGCTGCGTTTTGTTTAACATTGTTGCGGCGCTTACAAACAAACGCCGCTAATG
1551 CCACTATTCCTGAATATTAAACGATGCGTTTTGTCAGATTTACTA
66 CCACTATTCCTGAATATTAAACGATGCGTTTTGTCAGATTTACTA
* * *
1596 CTCAATCTTGTACGCTGCGTTTTGTTTAACATTGTTGCGGCGCTTACAAACAAACGCCGTTACTG
1 CTCAAACTTGTACGCTGCGTTTTGTTTAACATTGTTGCGGCGCTTACAAACAAACGCCGCTAATG
1661 CCACTATTCCTGAATATTAAACGATGCGTTTTGTCAGATTTACTA
66 CCACTATTCCTGAATATTAAACGATGCGTTTTGTCAGATTTACTA
1706 C
1 C
1707 GACGTTTTTC
Statistics
Matches: 108, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
110 108 1.00
ACGTcount: A:0.25, C:0.23, G:0.17, T:0.34
Consensus pattern (110 bp):
CTCAAACTTGTACGCTGCGTTTTGTTTAACATTGTTGCGGCGCTTACAAACAAACGCCGCTAATG
CCACTATTCCTGAATATTAAACGATGCGTTTTGTCAGATTTACTA
Found at i:9673 original size:17 final size:18
Alignment explanation
Indices: 9651--9726 Score: 73
Period size: 19 Copynumber: 4.1 Consensus size: 18
9641 AAATACTTTT
9651 TTTTAAA-TTTTTTAAAA
1 TTTTAAATTTTTTTAAAA
9668 TTTTAAATTTTTTTAAAATA
1 TTTTAAATTTTTTT-AAA-A
* **
9688 CTTTTTAATTTTTTTTTAA
1 -TTTTAAATTTTTTTAAAA
*
9707 TTTTAAAATATTTTTAAAA
1 TTTT-AAATTTTTTTAAAA
9726 T
1 T
9727 ACTTTTTAAA
Statistics
Matches: 47, Mismatches: 7, Indels: 8
0.76 0.11 0.13
Matches are distributed among these distances:
17 7 0.15
18 10 0.21
19 15 0.32
20 2 0.04
21 13 0.28
ACGTcount: A:0.37, C:0.01, G:0.00, T:0.62
Consensus pattern (18 bp):
TTTTAAATTTTTTTAAAA
Found at i:9734 original size:12 final size:11
Alignment explanation
Indices: 9625--9736 Score: 55
Period size: 11 Copynumber: 10.6 Consensus size: 11
9615 ATTTTTTTAA
*
9625 TTTTAAAATAC
1 TTTTAAAATAT
9636 TTTTAAAATACTTT
1 TTTTAAAATA---T
*
9650 TTTTTAAAT-T
1 TTTTAAAATAT
9660 TTTT-AAA-A-
1 TTTTAAAATAT
*
9668 TTTT-AAATTT
1 TTTTAAAATAT
9678 TTTTAAAATACT
1 TTTTAAAATA-T
9690 TTTT--AAT-T
1 TTTTAAAATAT
** *
9698 TTTT--TTTAA
1 TTTTAAAATAT
9707 TTTTAAAATAT
1 TTTTAAAATAT
9718 TTTTAAAATACT
1 TTTTAAAATA-T
9730 TTTTAAA
1 TTTTAAA
9737 TTTTTGTTTT
Statistics
Matches: 79, Mismatches: 10, Indels: 23
0.71 0.09 0.21
Matches are distributed among these distances:
8 13 0.16
9 7 0.09
10 12 0.15
11 26 0.33
12 13 0.16
14 8 0.10
ACGTcount: A:0.38, C:0.04, G:0.00, T:0.59
Consensus pattern (11 bp):
TTTTAAAATAT
Found at i:11661 original size:21 final size:22
Alignment explanation
Indices: 11637--11677 Score: 59
Period size: 21 Copynumber: 1.9 Consensus size: 22
11627 AATTCTTATA
11637 ATTTTAAATT-TTTA-TTTAAAT
1 ATTTT-AATTATTTAGTTTAAAT
11658 ATTTTAATTATTTAGTTTAA
1 ATTTTAATTATTTAGTTTAA
11678 CATTTAATTA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 4 0.22
21 9 0.50
22 5 0.28
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.61
Consensus pattern (22 bp):
ATTTTAATTATTTAGTTTAAAT
Found at i:11682 original size:21 final size:21
Alignment explanation
Indices: 11637--11687 Score: 54
Period size: 20 Copynumber: 2.5 Consensus size: 21
11627 AATTCTTATA
*
11637 ATTTTAAATT-TTTATTTAAAT
1 ATTTT-AATTATTTATTTAAAC
11658 ATTTTAATTATTTAGTTT-AAC
1 ATTTTAATTATTTA-TTTAAAC
11679 A-TTTAATTA
1 ATTTTAATTA
11688 GGATAATTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
20 12 0.44
21 12 0.44
22 3 0.11
ACGTcount: A:0.37, C:0.02, G:0.02, T:0.59
Consensus pattern (21 bp):
ATTTTAATTATTTATTTAAAC
Found at i:14831 original size:19 final size:20
Alignment explanation
Indices: 14806--14851 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 20
14796 TTTTAAAAAT
* *
14806 ATTTTTAATAATTTAT-ATA
1 ATTTTTAAAAAATTATAATA
*
14825 CTTTTTAAAAAATTATAATA
1 ATTTTTAAAAAATTATAATA
14845 ATTTTTA
1 ATTTTTA
14852 TATTTTTGAA
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
19 13 0.59
20 9 0.41
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.54
Consensus pattern (20 bp):
ATTTTTAAAAAATTATAATA
Found at i:14853 original size:29 final size:30
Alignment explanation
Indices: 14795--14858 Score: 87
Period size: 29 Copynumber: 2.2 Consensus size: 30
14785 ATTAATTAAT
*
14795 TTTTTAAAAATATTTTTAATAATTTATATA
1 TTTTTAAAAATATTTATAATAATTTATATA
*
14825 CTTTTTAAAAA-A-TTATAATAATTTTTATA
1 -TTTTTAAAAATATTTATAATAATTTATATA
14854 TTTTT
1 TTTTT
14859 GAATTTTTTA
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
28 5 0.16
29 15 0.48
30 1 0.03
31 10 0.32
ACGTcount: A:0.41, C:0.02, G:0.00, T:0.58
Consensus pattern (30 bp):
TTTTTAAAAATATTTATAATAATTTATATA
Found at i:15659 original size:19 final size:17
Alignment explanation
Indices: 15637--15675 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 17
15627 ATATAATAAA
*
15637 ATAATAAATATGTAATTAT
1 ATAATAAA-ATAT-ATTAT
15656 ATAATAAAATATATTAT
1 ATAATAAAATATATTAT
15673 ATA
1 ATA
15676 TATCATTATT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 8 0.42
18 3 0.16
19 8 0.42
ACGTcount: A:0.56, C:0.00, G:0.03, T:0.41
Consensus pattern (17 bp):
ATAATAAAATATATTAT
Found at i:15673 original size:17 final size:19
Alignment explanation
Indices: 15626--15675 Score: 59
Period size: 19 Copynumber: 2.7 Consensus size: 19
15616 ATCTTTTATT
* *
15626 TATATAATAAAATAATAAA
1 TATATAATTATATAATAAA
*
15645 TATGTAATTATATAATAAA
1 TATATAATTATATAATAAA
15664 -ATAT-ATTATATA
1 TATATAATTATATA
15676 TATCATTATT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
17 8 0.30
18 3 0.11
19 16 0.59
ACGTcount: A:0.58, C:0.00, G:0.02, T:0.40
Consensus pattern (19 bp):
TATATAATTATATAATAAA
Found at i:15683 original size:29 final size:27
Alignment explanation
Indices: 15625--15684 Score: 75
Period size: 27 Copynumber: 2.1 Consensus size: 27
15615 GATCTTTTAT
*
15625 TTATATAATAAAATAATAAATATGTAA
1 TTATATAATAAAATAATAAATATATAA
* *
15652 TTATATAATAAAATATATTATATATATCA
1 TTATATAATAAAATA-A-TAAATATATAA
15681 TTAT
1 TTAT
15685 TGTCGAAACT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
27 15 0.54
28 1 0.04
29 12 0.43
ACGTcount: A:0.53, C:0.02, G:0.02, T:0.43
Consensus pattern (27 bp):
TTATATAATAAAATAATAAATATATAA
Found at i:16468 original size:20 final size:19
Alignment explanation
Indices: 16443--16499 Score: 60
Period size: 20 Copynumber: 2.8 Consensus size: 19
16433 TGAACAATCA
16443 AAATAAATAAATAAGCAAAT
1 AAATAAATAAATAA-CAAAT
* *
16463 AAATAAAATAACTAACAACT
1 AAAT-AAATAAATAACAAAT
*
16483 AAATAAACTAACTAACA
1 AAATAAA-TAAATAACA
16500 TCATGAATAA
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
19 3 0.09
20 21 0.64
21 9 0.27
ACGTcount: A:0.67, C:0.12, G:0.02, T:0.19
Consensus pattern (19 bp):
AAATAAATAAATAACAAAT
Found at i:18433 original size:44 final size:44
Alignment explanation
Indices: 18247--18479 Score: 125
Period size: 44 Copynumber: 5.2 Consensus size: 44
18237 CCAACATAAT
* * * ** *
18247 TTCAGGGAGAAGAGACTTGTAGCTTTGATCTACTCTGCTGCAAT
1 TTCAGGGAGAAGAGATTTGTAACTTCGATCTACTCCACTGCAAC
* * * * * * * *
18291 TTTAAGGAGATA-AGAATTGATAATTTCAACCTGCTCCACTACAAC
1 TTCAGGGAGA-AGAGATTTG-TAACTTCGATCTACTCCACTGCAAC
* * ** *
18336 TTTAGGGAGATA-ATG-TTTGTATATTTTTATCCTACTTCACTGCAAC
1 TTCAGGGAGA-AGA-GATTTGTA-ACTTCGAT-CTACTCCACTGCAAC
* * * *
18382 TTCAGGGAGATA-AGGA-TTGTGACTTCGTTCTACTCCACTGTAAT
1 TTCAGGGAGA-AGA-GATTTGTAACTTCGATCTACTCCACTGCAAC
* **
18426 TTTAGGGAGAAGAGATTTGTAACTTCGATCTACTCCACCACAAC
1 TTCAGGGAGAAGAGATTTGTAACTTCGATCTACTCCACTGCAAC
18470 TTCAGGGAGA
1 TTCAGGGAGA
18480 TAAGGCTGGT
Statistics
Matches: 142, Mismatches: 39, Indels: 16
0.72 0.20 0.08
Matches are distributed among these distances:
43 3 0.02
44 69 0.49
45 40 0.28
46 30 0.21
ACGTcount: A:0.29, C:0.18, G:0.20, T:0.33
Consensus pattern (44 bp):
TTCAGGGAGAAGAGATTTGTAACTTCGATCTACTCCACTGCAAC
Found at i:18724 original size:143 final size:143
Alignment explanation
Indices: 18466--18816 Score: 490
Period size: 143 Copynumber: 2.5 Consensus size: 143
18456 TACTCCACCA
*
18466 CAACTTCAGGGAGATAAGGCTGGTGGCTTCAATATGCTCCACAGCAACTTTAGGAAGATAAGATC
1 CAACTTCAGGGAGATAAGGCTGGTGGCTTCAATATGCTCCACAGCAACTTCAGGAAGATAAGATC
*
18531 CGCTATAATTTGTAGCTTTAATCTATTCCACTGCAACGCCAGAGAAATAAGATTCGCTGTCTTCA
66 AGCTATAATTTGTAGCTTTAATCTATTCCACTGCAACGCCAGAGAAATAAGATTCGCTGTCTTCA
* **
18596 GTCTGTTCCGTTG
131 GTCTGCTCCACTG
* * * *
18609 CAACTTCAGGGAGATAAGGCTGGTGGCTTCAATCTGCTCTACTGCCACTTCAGGAAGATAAGATC
1 CAACTTCAGGGAGATAAGGCTGGTGGCTTCAATATGCTCCACAGCAACTTCAGGAAGATAAGATC
* *
18674 TAGC-ATAATTTGTAGCTTTAATCTATTCCACTGCAATGCCAGGGAAATAAGATTCGCTGTCTTC
66 -AGCTATAATTTGTAGCTTTAATCTATTCCACTGCAACGCCAGAGAAATAAGATTCGCTGTCTTC
*
18738 AGTCTGCTCTACTG
130 AGTCTGCTCCACTG
* *** * * **
18752 CAACTTCAGGGAAATAAAATTAGTGGCTTTAATATGCTCCACTA-CAACTTCAGGGGGATAAGAT
1 CAACTTCAGGGAGATAAGGCTGGTGGCTTCAATATGCTCCAC-AGCAACTTCAGGAAGATAAGAT
18816 C
65 C
18817 CGCCATAAAT
Statistics
Matches: 182, Mismatches: 24, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
143 180 0.99
144 2 0.01
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29
Consensus pattern (143 bp):
CAACTTCAGGGAGATAAGGCTGGTGGCTTCAATATGCTCCACAGCAACTTCAGGAAGATAAGATC
AGCTATAATTTGTAGCTTTAATCTATTCCACTGCAACGCCAGAGAAATAAGATTCGCTGTCTTCA
GTCTGCTCCACTG
Found at i:32213 original size:12 final size:11
Alignment explanation
Indices: 32196--32237 Score: 52
Period size: 11 Copynumber: 3.9 Consensus size: 11
32186 CAATCAAAAT
32196 AAATAAATAAGC
1 AAATAAATAA-C
32208 AAATAAAT-A-
1 AAATAAATAAC
*
32217 AAATAACTAAC
1 AAATAAATAAC
32228 AAATAAATAA
1 AAATAAATAA
32238 AATAACTAAC
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
9 7 0.27
10 1 0.04
11 10 0.38
12 8 0.31
ACGTcount: A:0.71, C:0.07, G:0.02, T:0.19
Consensus pattern (11 bp):
AAATAAATAAC
Found at i:32213 original size:16 final size:15
Alignment explanation
Indices: 32192--32237 Score: 56
Period size: 16 Copynumber: 2.9 Consensus size: 15
32182 TGAACAATCA
32192 AAATAAATAAATAAGC
1 AAATAAATAAATAA-C
32208 AAATAAATAAAATAAC
1 AAATAAAT-AAATAAC
* *
32224 TAACAAATAAATAA
1 AAATAAATAAATAA
32238 AATAACTAAC
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
15 6 0.22
16 15 0.56
17 6 0.22
ACGTcount: A:0.72, C:0.07, G:0.02, T:0.20
Consensus pattern (15 bp):
AAATAAATAAATAAC
Found at i:32217 original size:20 final size:19
Alignment explanation
Indices: 32192--32248 Score: 69
Period size: 20 Copynumber: 2.8 Consensus size: 19
32182 TGAACAATCA
32192 AAATAAATAAATAAGCAAAT
1 AAATAAATAAATAA-CAAAT
*
32212 AAATAAAATAACTAACAAAT
1 AAAT-AAATAAATAACAAAT
*
32232 AAATAAAATAACTAACA
1 AAAT-AAATAAATAACA
32249 TCATGAATAA
Statistics
Matches: 35, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
20 26 0.74
21 9 0.26
ACGTcount: A:0.70, C:0.09, G:0.02, T:0.19
Consensus pattern (19 bp):
AAATAAATAAATAACAAAT
Found at i:35451 original size:104 final size:104
Alignment explanation
Indices: 35271--35505 Score: 319
Period size: 104 Copynumber: 2.3 Consensus size: 104
35261 ATGGCTAGGG
* * * * * * *
35271 ACATGGACGTGTGCCCAGACCGTGTGAGCCACACGGGCAAGGACATGGGCGTGTGTCCAGGTCAT
1 ACATGGGCGTGTGCCCAGGCTGTGTGAGCCACACGGGCAAAGACATAGGCCTGTGTCCAGGCCAT
*
35336 GTAACTCACTGTTTATGATTTAGGACCACAC-AGCCAGGA
66 GTAACTCACTGTTTATGATTTAGAACCACACGA-CCAGGA
* * *
35375 ACATGGGTGTGTGCCCAGGCTGTGTGAGCCACATGGGCAAAGACATAGGCCTGTGTCCAGGCCGT
1 ACATGGGCGTGTGCCCAGGCTGTGTGAGCCACACGGGCAAAGACATAGGCCTGTGTCCAGGCCAT
* *
35440 GTAACTCACTGTTTATGATTTAGAACCACACGATCAGGG
66 GTAACTCACTGTTTATGATTTAGAACCACACGACCAGGA
* *
35479 ACATGGGCGTGTGCCTAGGTTGTGTGA
1 ACATGGGCGTGTGCCCAGGCTGTGTGA
35506 CTCACTATTT
Statistics
Matches: 114, Mismatches: 16, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
104 113 0.99
105 1 0.01
ACGTcount: A:0.23, C:0.23, G:0.31, T:0.23
Consensus pattern (104 bp):
ACATGGGCGTGTGCCCAGGCTGTGTGAGCCACACGGGCAAAGACATAGGCCTGTGTCCAGGCCAT
GTAACTCACTGTTTATGATTTAGAACCACACGACCAGGA
Found at i:36267 original size:15 final size:15
Alignment explanation
Indices: 36234--36277 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
36224 ACATACATGA
* *
36234 TCTATTCTGCTCTGT
1 TCTATTCTGCCCTGC
*
36249 TCTATTCTACCCTGC
1 TCTATTCTGCCCTGC
*
36264 TCTACTCTGCCCTG
1 TCTATTCTGCCCTG
36278 TACCATTCCG
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 24 1.00
ACGTcount: A:0.09, C:0.36, G:0.11, T:0.43
Consensus pattern (15 bp):
TCTATTCTGCCCTGC
Found at i:38476 original size:104 final size:103
Alignment explanation
Indices: 38241--38484 Score: 305
Period size: 104 Copynumber: 2.3 Consensus size: 103
38231 GGCTGTTGAC
* * * * *
38241 ACCACATGACCAGGGACATGGGCATGTGCCCAGGCCGTGTGAGCAACACAGGTAAGGACATGGGC
1 ACCACATGACCAGGGATAT-GTCGTGTGCCCAGGCCGTGTGAGCAACACAGGCAAGGACATGAGC
* * * *
38306 GTGTGTTCAGGTCGTGTAACTCACTGTTTATGATTTAGG
65 ATATGTCCAGGGCGTGTAACTCACTGTTTATGATTTAGG
* * *
38345 ACCACACTG-CCAAGGACATAGGT-GTGTGCCTAGGCCGTGTGAGCCAA-ACAGGCAAGGACATG
1 ACCACA-TGACC-AGG-GATATGTCGTGTGCCCAGGCCGTGTGAG-CAACACAGGCAAGGACATG
38407 AGCATATGTCCAGGGCGTGTAACTCACTGTTTATGATTTAGG
62 AGCATATGTCCAGGGCGTGTAACTCACTGTTTATGATTTAGG
38449 ACCACATGACCAGGGATATGTACGTGTGCCCAGGCC
1 ACCACATGACCAGGGATATGT-CGTGTGCCCAGGCC
38485 CTATGACTCA
Statistics
Matches: 118, Mismatches: 15, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
102 5 0.04
103 5 0.04
104 97 0.82
105 9 0.08
106 2 0.02
ACGTcount: A:0.25, C:0.23, G:0.30, T:0.22
Consensus pattern (103 bp):
ACCACATGACCAGGGATATGTCGTGTGCCCAGGCCGTGTGAGCAACACAGGCAAGGACATGAGCA
TATGTCCAGGGCGTGTAACTCACTGTTTATGATTTAGG
Found at i:41410 original size:57 final size:58
Alignment explanation
Indices: 41347--41463 Score: 227
Period size: 57 Copynumber: 2.0 Consensus size: 58
41337 AAAATGAATT
41347 TCTGGTTTTCAAAATTAAAATCCCGAAAAGAAATCAGTTTTCAATGCA-TGATGTAAC
1 TCTGGTTTTCAAAATTAAAATCCCGAAAAGAAATCAGTTTTCAATGCATTGATGTAAC
41404 TCTGGTTTTCAAAATTAAAATCCCGAAAAGAAATCAGTTTTCAATGCATTGATGTAAC
1 TCTGGTTTTCAAAATTAAAATCCCGAAAAGAAATCAGTTTTCAATGCATTGATGTAAC
41462 TC
1 TC
41464 GTCCAAGTTT
Statistics
Matches: 59, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
57 48 0.81
58 11 0.19
ACGTcount: A:0.38, C:0.16, G:0.14, T:0.32
Consensus pattern (58 bp):
TCTGGTTTTCAAAATTAAAATCCCGAAAAGAAATCAGTTTTCAATGCATTGATGTAAC
Found at i:41705 original size:42 final size:42
Alignment explanation
Indices: 41645--41735 Score: 114
Period size: 42 Copynumber: 2.2 Consensus size: 42
41635 ATTTTATTTA
41645 TAAAAATAAAAGAGTTATTAATTAAAAATATAAATAA-AAAT-T
1 TAAAAATAAAAGAGTTATTAATTAAAAATA-AAA-AATAAATAT
* * * *
41687 TAAAAATAATATATTTATTAGTTAAAAATAAAAAATAAATAT
1 TAAAAATAAAAGAGTTATTAATTAAAAATAAAAAATAAATAT
41729 TAAAAAT
1 TAAAAAT
41736 TAACAAGAAA
Statistics
Matches: 43, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
40 2 0.05
41 7 0.16
42 34 0.79
ACGTcount: A:0.64, C:0.00, G:0.03, T:0.33
Consensus pattern (42 bp):
TAAAAATAAAAGAGTTATTAATTAAAAATAAAAAATAAATAT
Found at i:41746 original size:20 final size:20
Alignment explanation
Indices: 41708--41747 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
41698 TATTTATTAG
*
41708 TTAAAAATAAAAAATAAATA
1 TTAAAAATAAAAAAGAAATA
* *
41728 TTAAAAATTAACAAGAAATA
1 TTAAAAATAAAAAAGAAATA
41748 ACTGCAACAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.70, C:0.03, G:0.03, T:0.25
Consensus pattern (20 bp):
TTAAAAATAAAAAAGAAATA
Found at i:42108 original size:18 final size:17
Alignment explanation
Indices: 42080--42114 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
42070 AATTATAAGA
*
42080 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
42097 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
42115 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:42191 original size:156 final size:156
Alignment explanation
Indices: 42003--49548 Score: 15065
Period size: 156 Copynumber: 48.4 Consensus size: 156
41993 CCTGTTTCTC
42003 ATAATAATAATCTTATTAAAATTTAAATAACATTAACAATAATCATTTACCAAAACAATTTTCTG
1 ATAATAATAATCTTATTAAAATTTAAATAACATTAACAATAATCATTTACCAAAACAATTTTCTG
42068 CTAATTATAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
66 CTAATTATAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
42133 AAATATGATTAAAATATTTATTACTG
131 AAATATGATTAAAATATTTATTACTG
42159 ATAATAATAATCTTATTAAAATTTAAATAACATTAACAATAATCATTTACCAAAACAATTTTCTG
1 ATAATAATAATCTTATTAAAATTTAAATAACATTAACAATAATCATTTACCAAAACAATTTTCTG
42224 CTAATTATAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
66 CTAATTATAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
42289 AAATATGATTAAAATATTTATTACTG
131 AAATATGATTAAAATATTTATTACTG
42315 ATAATAATAATCTTATTAAAATTTAAATAACATTAACAATAATCATTTACCAAAACAATTTTCTG
1 ATAATAATAATCTTATTAAAATTTAAATAACATTAACAATAATCATTTACCAAAACAATTTTCTG
42380 CTAATTATAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
66 CTAATTATAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
42445 AAATATGATTAAAATATTTATTACTG
131 AAATATGATTAAAATATTTATTACTG
42471 ATAATAATAATCTTATTAAAATTTAAATAACATTAACAATAATCATTTACCAAAACAATTTTCTG
1 ATAATAATAATCTTATTAAAATTTAAATAACATTAACAATAATCATTTACCAAAACAATTTTCTG
42536 CTAATTATAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
66 CTAATTATAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
42601 AAATATGATTAAAATATTTATTACTG
131 AAATATGATTAAAATATTTATTACTG
42627 ATAATAATAATCTTATTAAAATTTAAATAACATTAACAATAATCATTTACCAAAACAATTTTCTG
1 ATAATAATAATCTTATTAAAATTTAAATAACATTAACAATAATCATTTACCAAAACAATTTTCTG
42692 CTAATTATAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
66 CTAATTATAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
42757 AAATATGATTAAAATATTTATTACTG
131 AAATATGATTAAAATATTTATTACTG
42783 ATAATAATAATCTTATTAAAATTTAAATAACATTAACAATAATCATTTACCAAAACAATTTTCTG
1 ATAATAATAATCTTATTAAAATTTAAATAACATTAACAATAATCATTTACCAAAACAATTTTCTG
42848 CTAATTATAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
66 CTAATTATAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
42913 AAATATGATTAAAATATTTATTACTG
131 AAATATGATTAAAATATTTATTACTG
42939 ATAATAATAATCTTATTAAAATTTAAATAACATTAACAATAATCATTTACCAAAACAATTTTCTG
1 ATAATAATAATCTTATTAAAATTTAAATAACATTAACAATAATCATTTACCAAAACAATTTTCTG
43004 CTAATTATAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
66 CTAATTATAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
43069 AAATATGATTAAAATATTTATTACTG
131 AAATATGATTAAAATATTTATTACTG
43095 ATAATAATAATCTTATTAAAATTTAAATAACATTAACAATAATCATTTACCAAAACAATTTTCTG
1 ATAATAATAATCTTATTAAAATTTAAATAACATTAACAATAATCATTTACCAAAACAATTTTCTG
43160 CTAATTATAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
66 CTAATTATAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
43225 AAATATGATTAAAATATTTATTACTG
131 AAATATGATTAAAATATTTATTACTG
43251 ATAATAATAATCTTATTAAAATTTAAATAACATTAACAATAATCATTTACCAAAACAATTTTCTG
1 ATAATAATAATCTTATTAAAATTTAAATAACATTAACAATAATCATTTACCAAAACAATTTTCTG
43316 CTAATTATAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
66 CTAATTATAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
43381 AAATATGATTAAAATATTTATTACTG
131 AAATATGATTAAAATATTTATTACTG
43407 ATAATAATAATCTTATTAAAATTTAAATAACATTAACAATAATCATTTACCAAAACAATTTTCTG
1 ATAATAATAATCTTATTAAAATTTAAATAACATTAACAATAATCATTTACCAAAACAATTTTCTG
43472 CTAATTATAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
66 CTAATTATAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
43537 AAATATGATTAAAATATTTATTACTG
131 AAATATGATTAAAATATTTATTACTG
43563 ATAATAATAATCTTATTAAAATTTAAATAACATTAACAATAATCATTTACCAAAACAATTTTCTG
1 ATAATAATAATCTTATTAAAATTTAAATAACATTAACAATAATCATTTACCAAAACAATTTTCTG
43628 CTAATTATAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
66 CTAATTATAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
43693 AAATATGATTAAAATATTTATTACTG
131 AAATATGATTAAAATATTTATTACTG
43719 ATAATAATAATCTTATTAAAATTTAAATAACATTAACAATAATCATTTACCAAAACAATTTTCTG
1 ATAATAATAATCTTATTAAAATTTAAATAACATTAACAATAATCATTTACCAAAACAATTTTCTG
43784 CTAATTATAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
66 CTAATTATAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
43849 AAATATGATTAAAATATTTATTACTG
131 AAATATGATTAAAATATTTATTACTG
43875 ATAATAATAATCTTATTAAAATTTAAATAACATTAACAATAATCATTTACCAAAACAATTTTCTG
1 ATAATAATAATCTTATTAAAATTTAAATAACATTAACAATAATCATTTACCAAAACAATTTTCTG
43940 CTAATTATAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
66 CTAATTATAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
44005 AAATATGATTAAAATATTTATTACTG
131 AAATATGATTAAAATATTTATTACTG
44031 ATAATAATAATCTTATTAAAATTTAAATAACATTAACAATAATCATTTACCAAAACAATTTTCTG
1 ATAATAATAATCTTATTAAAATTTAAATAACATTAACAATAATCATTTACCAAAACAATTTTCTG
44096 CTAATTATAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
66 CTAATTATAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
44161 AAATATGATTAAAATATTTATTACTG
131 AAATATGATTAAAATATTTATTACTG
44187 ATAATAATAATCTTATTAAAATTTAAATAACATTAACAATAATCATTTACCAAAACAATTTTCTG
1 ATAATAATAATCTTATTAAAATTTAAATAACATTAACAATAATCATTTACCAAAACAATTTTCTG
44252 CTAATTATAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
66 CTAATTATAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
44317 AAATATGATTAAAATATTTATTACTG
131 AAATATGATTAAAATATTTATTACTG
44343 ATAATAATAATCTTATTAAAATTTAAATAACATTAACAATAATCATTTACCAAAACAATTTTCTG
1 ATAATAATAATCTTATTAAAATTTAAATAACATTAACAATAATCATTTACCAAAACAATTTTCTG
44408 CTAATTATAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
66 CTAATTATAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
44473 AAATATGATTAAAATATTTATTACTG
131 AAATATGATTAAAATATTTATTACTG
44499 ATAATAATAATCTTATTAAAATTTAAATAACATTAACAATAATCATTTACCAAAACAATTTTCTG
1 ATAATAATAATCTTATTAAAATTTAAATAACATTAACAATAATCATTTACCAAAACAATTTTCTG
44564 CTAATTATAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
66 CTAATTATAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
44629 AAATATGATTAAAATATTTATTACTG
131 AAATATGATTAAAATATTTATTACTG
44655 ATAATAATAATCTTATTAAAATTTAAATAACATTAACAATAATCATTTACCAAAACAATTTTCTG
1 ATAATAATAATCTTATTAAAATTTAAATAACATTAACAATAATCATTTACCAAAACAATTTTCTG
44720 CTAATTATAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
66 CTAATTATAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
44785 AAATATGATTAAAATATTTATTACTG
131 AAATATGATTAAAATATTTATTACTG
44811 ATAATAATAATCTTATTAAAATTTAAATAACATTAACAATAATCATTTACCAAAACAATTTTCTG
1 ATAATAATAATCTTATTAAAATTTAAATAACATTAACAATAATCATTTACCAAAACAATTTTCTG
44876 CTAATTATAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
66 CTAATTATAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
44941 AAATATGATTAAAATATTTATTACTG
131 AAATATGATTAAAATATTTATTACTG
44967 ATAATAATAATCTTATTAAAATTTAAATAACATTAACAATAATCATTTACCAAAACAATTTTCTG
1 ATAATAATAATCTTATTAAAATTTAAATAACATTAACAATAATCATTTACCAAAACAATTTTCTG
45032 CTAATTATAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
66 CTAATTATAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
45097 AAATATGATTAAAATATTTATTACTG
131 AAATATGATTAAAATATTTATTACTG
45123 ATAATAATAATCTTATTAAAATTTAAATAACATTAACAATAATCATTTACCAAAACAATTTTCTG
1 ATAATAATAATCTTATTAAAATTTAAATAACATTAACAATAATCATTTACCAAAACAATTTTCTG
45188 CTAATTATAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
66 CTAATTATAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
45253 AAATATGATTAAAATATTTATTACTG
131 AAATATGATTAAAATATTTATTACTG
45279 ATAATAATAATCTTATTAAAATTTAAATAACATTAACAATAATCATTTACCAAAACAATTTTCTG
1 ATAATAATAATCTTATTAAAATTTAAATAACATTAACAATAATCATTTACCAAAACAATTTTCTG
45344 CTAATTATAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
66 CTAATTATAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
45409 AAATATGATTAAAATATTTATTACTG
131 AAATATGATTAAAATATTTATTACTG
45435 ATAATAATAATCTTATTAAAATTTAAATAACATTAACAATAATCATTTACCAAAACAATTTTCTG
1 ATAATAATAATCTTATTAAAATTTAAATAACATTAACAATAATCATTTACCAAAACAATTTTCTG
45500 CTAATTATAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
66 CTAATTATAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
45565 AAATATGATTAAAATATTTATTACTG
131 AAATATGATTAAAATATTTATTACTG
45591 ATAATAATAATCTTATTAAAATTTAAATAACATTAACAATAATCATTTACCAAAACAATTTTCTG
1 ATAATAATAATCTTATTAAAATTTAAATAACATTAACAATAATCATTTACCAAAACAATTTTCTG
45656 CTAATTATAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
66 CTAATTATAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
45721 AAATATGATTAAAATATTTATTACTG
131 AAATATGATTAAAATATTTATTACTG
45747 ATAATAATAATCTTATTAAAATTTAAATAACATTAACAATAATCATTTACCAAAACAATTTTCTG
1 ATAATAATAATCTTATTAAAATTTAAATAACATTAACAATAATCATTTACCAAAACAATTTTCTG
45812 CTAATTATAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
66 CTAATTATAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
45877 AAATATGATTAAAATATTTATTACTG
131 AAATATGATTAAAATATTTATTACTG
45903 ATAATAATAATCTTATTAAAATTTAAATAACATTAACAATAATCATTTACCAAAACAATTTTCTG
1 ATAATAATAATCTTATTAAAATTTAAATAACATTAACAATAATCATTTACCAAAACAATTTTCTG
45968 CTAATTATAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
66 CTAATTATAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
46033 AAATATGATTAAAATATTTATTACTG
131 AAATATGATTAAAATATTTATTACTG
46059 ATAATAATAATCTTATTAAAATTTAAATAACATTAACAATAATCATTTACCAAAACAATTTTCTG
1 ATAATAATAATCTTATTAAAATTTAAATAACATTAACAATAATCATTTACCAAAACAATTTTCTG
46124 CTAATTATAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
66 CTAATTATAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
46189 AAATATGATTAAAATATTTATTACTG
131 AAATATGATTAAAATATTTATTACTG
46215 ATAATAATAATCTTATTAAAATTTAAATAACATTAACAATAATCATTTACCAAAACAATTTTCTG
1 ATAATAATAATCTTATTAAAATTTAAATAACATTAACAATAATCATTTACCAAAACAATTTTCTG
46280 CTAATTATAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
66 CTAATTATAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
46345 AAATATGATTAAAATATTTATTACTG
131 AAATATGATTAAAATATTTATTACTG
46371 ATAATAATAATCTTATTAAAATTTAAATAACATTAACAATAATCATTTACCAAAACAATTTTCTG
1 ATAATAATAATCTTATTAAAATTTAAATAACATTAACAATAATCATTTACCAAAACAATTTTCTG
46436 CTAATTATAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
66 CTAATTATAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
46501 AAATATGATTAAAATATTTATTACTG
131 AAATATGATTAAAATATTTATTACTG
46527 ATAATAATAATCTTATTAAAATTTAAATAACATTAACAATAATCATTTACCAAAACAATTTTCTG
1 ATAATAATAATCTTATTAAAATTTAAATAACATTAACAATAATCATTTACCAAAACAATTTTCTG
46592 CTAATTATAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
66 CTAATTATAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
46657 AAATATGATTAAAATATTTATTACTG
131 AAATATGATTAAAATATTTATTACTG
46683 ATAATAATAATCTTATTAAAATTTAAATAACATTAACAATAATCATTTACCAAAACAATTTTCTG
1 ATAATAATAATCTTATTAAAATTTAAATAACATTAACAATAATCATTTACCAAAACAATTTTCTG
46748 CTAATTATAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
66 CTAATTATAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
46813 AAATATGATTAAAATATTTATTACTG
131 AAATATGATTAAAATATTTATTACTG
46839 ATAATAATAATCTTATTAAAATTTAAATAACATTAACAATAATCATTTACCAAAACAATTTTCTG
1 ATAATAATAATCTTATTAAAATTTAAATAACATTAACAATAATCATTTACCAAAACAATTTTCTG
46904 CTAATTATAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
66 CTAATTATAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
46969 AAATATGATTAAAATATTTATTACTG
131 AAATATGATTAAAATATTTATTACTG
46995 ATAATAATAATCTTATTAAAATTTAAATAACATTAACAATAATCATTTACCAAAACAATTTTCTG
1 ATAATAATAATCTTATTAAAATTTAAATAACATTAACAATAATCATTTACCAAAACAATTTTCTG
47060 CTAATTATAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
66 CTAATTATAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
47125 AAATATGATTAAAATATTTATTACTG
131 AAATATGATTAAAATATTTATTACTG
47151 ATAATAATAATCTTATTAAAATTTAAATAACATTAACAATAATCATTTACCAAAACAATTTTCTG
1 ATAATAATAATCTTATTAAAATTTAAATAACATTAACAATAATCATTTACCAAAACAATTTTCTG
47216 CTAATTATAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
66 CTAATTATAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
47281 AAATATGATTAAAATATTTATTACTG
131 AAATATGATTAAAATATTTATTACTG
47307 ATAATAATAATCTTATTAAAATTTAAATAACATTAACAATAATCATTTACCAAAACAATTTTCTG
1 ATAATAATAATCTTATTAAAATTTAAATAACATTAACAATAATCATTTACCAAAACAATTTTCTG
47372 CTAATTATAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
66 CTAATTATAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
47437 AAATATGATTAAAATATTTATTACTG
131 AAATATGATTAAAATATTTATTACTG
47463 ATAATAATAATCTTATTAAAATTTAAATAACATTAACAATAATCATTTACCAAAACAATTTTCTG
1 ATAATAATAATCTTATTAAAATTTAAATAACATTAACAATAATCATTTACCAAAACAATTTTCTG
47528 CTAATTATAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
66 CTAATTATAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
47593 AAATATGATTAAAATATTTATTACTG
131 AAATATGATTAAAATATTTATTACTG
47619 ATAATAATAATCTTATTAAAATTTAAATAACATTAACAATAATCATTTACCAAAACAATTTTCTG
1 ATAATAATAATCTTATTAAAATTTAAATAACATTAACAATAATCATTTACCAAAACAATTTTCTG
47684 CTAATTATAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
66 CTAATTATAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
47749 AAATATGATTAAAATATTTATTACTG
131 AAATATGATTAAAATATTTATTACTG
47775 ATAATAATAATCTTATTAAAATTTAAATAACATTAACAATAATCATTTACCAAAACAATTTTCTG
1 ATAATAATAATCTTATTAAAATTTAAATAACATTAACAATAATCATTTACCAAAACAATTTTCTG
47840 CTAATTATAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
66 CTAATTATAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
47905 AAATATGATTAAAATATTTATTACTG
131 AAATATGATTAAAATATTTATTACTG
47931 ATAATAATAATCTTATTAAAATTTAAATAACATTAACAATAATCATTTACCAAAACAATTTTCTG
1 ATAATAATAATCTTATTAAAATTTAAATAACATTAACAATAATCATTTACCAAAACAATTTTCTG
47996 CTAATTATAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
66 CTAATTATAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
48061 AAATATGATTAAAATATTTATTACTG
131 AAATATGATTAAAATATTTATTACTG
48087 ATAATAATAATCTTATTAAAATTTAAATAACATTAACAATAATCATTTACCAAAACAATTTTCTG
1 ATAATAATAATCTTATTAAAATTTAAATAACATTAACAATAATCATTTACCAAAACAATTTTCTG
48152 CTAATTATAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
66 CTAATTATAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
48217 AAATATGATTAAAATATTTATTACTG
131 AAATATGATTAAAATATTTATTACTG
48243 ATAATAATAATCTTATTAAAATTTAAATAACATTAACAATAATCATTTACCAAAACAATTTTCTG
1 ATAATAATAATCTTATTAAAATTTAAATAACATTAACAATAATCATTTACCAAAACAATTTTCTG
48308 CTAATTATAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
66 CTAATTATAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
48373 AAATATGATTAAAATATTTATTACTG
131 AAATATGATTAAAATATTTATTACTG
48399 ATAATAATAATCTTATTAAAATTTAAATAACATTAACAATAATCATTTACCAAAACAATTTTCTG
1 ATAATAATAATCTTATTAAAATTTAAATAACATTAACAATAATCATTTACCAAAACAATTTTCTG
48464 CTAATTATAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
66 CTAATTATAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
48529 AAATATGATTAAAATATTTATTACTG
131 AAATATGATTAAAATATTTATTACTG
48555 ATAATAATAATCTTATTAAAATTTAAATAACATTAACAATAATCATTTACCAAAACAATTTTCTG
1 ATAATAATAATCTTATTAAAATTTAAATAACATTAACAATAATCATTTACCAAAACAATTTTCTG
48620 CTAATTATAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
66 CTAATTATAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
48685 AAATATGATTAAAATATTTATTACTG
131 AAATATGATTAAAATATTTATTACTG
48711 ATAATAATAATCTTATTAAAATTTAAATAACATTAACAATAATCATTTACCAAAACAATTTTCTG
1 ATAATAATAATCTTATTAAAATTTAAATAACATTAACAATAATCATTTACCAAAACAATTTTCTG
48776 CTAATTATAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
66 CTAATTATAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
48841 AAATATGATTAAAATATTTATTACTG
131 AAATATGATTAAAATATTTATTACTG
48867 ATAATAATAATCTTATTAAAATTTAAATAACATTAACAATAATCATTTACCAAAACAATTTTCTG
1 ATAATAATAATCTTATTAAAATTTAAATAACATTAACAATAATCATTTACCAAAACAATTTTCTG
48932 CTAATTATAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
66 CTAATTATAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
48997 AAATATGATTAAAATATTTATTACTG
131 AAATATGATTAAAATATTTATTACTG
49023 ATAATAATAATCTTATTAAAATTTAAATAACATTAACAATAATCATTTACCAAAACAATTTTCTG
1 ATAATAATAATCTTATTAAAATTTAAATAACATTAACAATAATCATTTACCAAAACAATTTTCTG
49088 CTAATTATAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
66 CTAATTATAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
49153 AAATATGATTAAAATATTTATTACTG
131 AAATATGATTAAAATATTTATTACTG
49179 ATAATAATAATCTTATTAAAATTTAAATAACATTAACAATAATCATTTACCAAAACAATTTTCTG
1 ATAATAATAATCTTATTAAAATTTAAATAACATTAACAATAATCATTTACCAAAACAATTTTCTG
49244 CTAATTATAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
66 CTAATTATAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
49309 AAATATGATTAAAATATTTATTACTG
131 AAATATGATTAAAATATTTATTACTG
49335 ATAATAATAATCTTATTAAAATTTAAATAACATTAACAATAATCATTTACCAAAACAATTTTCTG
1 ATAATAATAATCTTATTAAAATTTAAATAACATTAACAATAATCATTTACCAAAACAATTTTCTG
49400 CTAATTATAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
66 CTAATTATAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
49465 AAATATGATTAAAATATTTATTACTG
131 AAATATGATTAAAATATTTATTACTG
* * *
49491 ATAATAATAATCTTATTAAAATTTAAATAACAATAAAAAAAATCATTTACCAAAACAA
1 ATAATAATAATCTTATTAAAATTTAAATAACATTAACAATAATCATTTACCAAAACAA
49549 ATTTATGTTA
Statistics
Matches: 7387, Mismatches: 3, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
156 7387 1.00
ACGTcount: A:0.47, C:0.06, G:0.03, T:0.43
Consensus pattern (156 bp):
ATAATAATAATCTTATTAAAATTTAAATAACATTAACAATAATCATTTACCAAAACAATTTTCTG
CTAATTATAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
AAATATGATTAAAATATTTATTACTG
Found at i:42264 original size:18 final size:17
Alignment explanation
Indices: 42236--42270 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
42226 AATTATAAGA
*
42236 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
42253 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
42271 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:42420 original size:18 final size:17
Alignment explanation
Indices: 42392--42426 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
42382 AATTATAAGA
*
42392 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
42409 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
42427 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:42576 original size:18 final size:17
Alignment explanation
Indices: 42548--42582 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
42538 AATTATAAGA
*
42548 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
42565 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
42583 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:42732 original size:18 final size:17
Alignment explanation
Indices: 42704--42738 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
42694 AATTATAAGA
*
42704 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
42721 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
42739 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:42888 original size:18 final size:17
Alignment explanation
Indices: 42860--42894 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
42850 AATTATAAGA
*
42860 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
42877 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
42895 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:43044 original size:18 final size:17
Alignment explanation
Indices: 43016--43050 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
43006 AATTATAAGA
*
43016 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
43033 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
43051 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:43200 original size:18 final size:17
Alignment explanation
Indices: 43172--43206 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
43162 AATTATAAGA
*
43172 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
43189 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
43207 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:43356 original size:18 final size:17
Alignment explanation
Indices: 43328--43362 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
43318 AATTATAAGA
*
43328 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
43345 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
43363 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:43512 original size:18 final size:17
Alignment explanation
Indices: 43484--43518 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
43474 AATTATAAGA
*
43484 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
43501 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
43519 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:43668 original size:18 final size:17
Alignment explanation
Indices: 43640--43674 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
43630 AATTATAAGA
*
43640 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
43657 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
43675 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:43824 original size:18 final size:17
Alignment explanation
Indices: 43796--43830 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
43786 AATTATAAGA
*
43796 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
43813 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
43831 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:43980 original size:18 final size:17
Alignment explanation
Indices: 43952--43986 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
43942 AATTATAAGA
*
43952 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
43969 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
43987 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:44136 original size:18 final size:17
Alignment explanation
Indices: 44108--44142 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
44098 AATTATAAGA
*
44108 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
44125 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
44143 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:44292 original size:18 final size:17
Alignment explanation
Indices: 44264--44298 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
44254 AATTATAAGA
*
44264 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
44281 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
44299 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:44448 original size:18 final size:17
Alignment explanation
Indices: 44420--44454 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
44410 AATTATAAGA
*
44420 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
44437 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
44455 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:44604 original size:18 final size:17
Alignment explanation
Indices: 44576--44610 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
44566 AATTATAAGA
*
44576 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
44593 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
44611 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:44760 original size:18 final size:17
Alignment explanation
Indices: 44732--44766 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
44722 AATTATAAGA
*
44732 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
44749 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
44767 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:44916 original size:18 final size:17
Alignment explanation
Indices: 44888--44922 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
44878 AATTATAAGA
*
44888 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
44905 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
44923 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:45072 original size:18 final size:17
Alignment explanation
Indices: 45044--45078 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
45034 AATTATAAGA
*
45044 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
45061 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
45079 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:45228 original size:18 final size:17
Alignment explanation
Indices: 45200--45234 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
45190 AATTATAAGA
*
45200 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
45217 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
45235 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:45384 original size:18 final size:17
Alignment explanation
Indices: 45356--45390 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
45346 AATTATAAGA
*
45356 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
45373 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
45391 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:45540 original size:18 final size:17
Alignment explanation
Indices: 45512--45546 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
45502 AATTATAAGA
*
45512 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
45529 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
45547 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:45696 original size:18 final size:17
Alignment explanation
Indices: 45668--45702 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
45658 AATTATAAGA
*
45668 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
45685 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
45703 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:45852 original size:18 final size:17
Alignment explanation
Indices: 45824--45858 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
45814 AATTATAAGA
*
45824 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
45841 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
45859 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:46008 original size:18 final size:17
Alignment explanation
Indices: 45980--46014 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
45970 AATTATAAGA
*
45980 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
45997 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
46015 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:46164 original size:18 final size:17
Alignment explanation
Indices: 46136--46170 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
46126 AATTATAAGA
*
46136 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
46153 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
46171 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:46320 original size:18 final size:17
Alignment explanation
Indices: 46292--46326 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
46282 AATTATAAGA
*
46292 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
46309 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
46327 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:46476 original size:18 final size:17
Alignment explanation
Indices: 46448--46482 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
46438 AATTATAAGA
*
46448 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
46465 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
46483 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:46632 original size:18 final size:17
Alignment explanation
Indices: 46604--46638 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
46594 AATTATAAGA
*
46604 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
46621 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
46639 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:46788 original size:18 final size:17
Alignment explanation
Indices: 46760--46794 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
46750 AATTATAAGA
*
46760 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
46777 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
46795 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:46944 original size:18 final size:17
Alignment explanation
Indices: 46916--46950 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
46906 AATTATAAGA
*
46916 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
46933 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
46951 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:47100 original size:18 final size:17
Alignment explanation
Indices: 47072--47106 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
47062 AATTATAAGA
*
47072 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
47089 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
47107 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:47256 original size:18 final size:17
Alignment explanation
Indices: 47228--47262 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
47218 AATTATAAGA
*
47228 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
47245 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
47263 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:47412 original size:18 final size:17
Alignment explanation
Indices: 47384--47418 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
47374 AATTATAAGA
*
47384 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
47401 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
47419 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:47568 original size:18 final size:17
Alignment explanation
Indices: 47540--47574 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
47530 AATTATAAGA
*
47540 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
47557 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
47575 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:47724 original size:18 final size:17
Alignment explanation
Indices: 47696--47730 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
47686 AATTATAAGA
*
47696 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
47713 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
47731 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:47880 original size:18 final size:17
Alignment explanation
Indices: 47852--47886 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
47842 AATTATAAGA
*
47852 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
47869 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
47887 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:48036 original size:18 final size:17
Alignment explanation
Indices: 48008--48042 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
47998 AATTATAAGA
*
48008 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
48025 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
48043 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:48192 original size:18 final size:17
Alignment explanation
Indices: 48164--48198 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
48154 AATTATAAGA
*
48164 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
48181 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
48199 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:48348 original size:18 final size:17
Alignment explanation
Indices: 48320--48354 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
48310 AATTATAAGA
*
48320 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
48337 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
48355 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:48504 original size:18 final size:17
Alignment explanation
Indices: 48476--48510 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
48466 AATTATAAGA
*
48476 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
48493 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
48511 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:48660 original size:18 final size:17
Alignment explanation
Indices: 48632--48666 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
48622 AATTATAAGA
*
48632 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
48649 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
48667 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:48816 original size:18 final size:17
Alignment explanation
Indices: 48788--48822 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
48778 AATTATAAGA
*
48788 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
48805 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
48823 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:48972 original size:18 final size:17
Alignment explanation
Indices: 48944--48978 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
48934 AATTATAAGA
*
48944 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
48961 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
48979 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:49128 original size:18 final size:17
Alignment explanation
Indices: 49100--49134 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
49090 AATTATAAGA
*
49100 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
49117 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
49135 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:49284 original size:18 final size:17
Alignment explanation
Indices: 49256--49290 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
49246 AATTATAAGA
*
49256 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
49273 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
49291 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:49440 original size:18 final size:17
Alignment explanation
Indices: 49412--49446 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
49402 AATTATAAGA
*
49412 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
49429 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
49447 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:51095 original size:21 final size:21
Alignment explanation
Indices: 51069--51108 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
51059 AAAATATAAA
*
51069 TAAAAATAAGTAT-AAAATATT
1 TAAAAA-AAATATGAAAATATT
51090 TAAAAAAAATATGAAAATA
1 TAAAAAAAATATGAAAATA
51109 AAATAATAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.68, C:0.00, G:0.05, T:0.28
Consensus pattern (21 bp):
TAAAAAAAATATGAAAATATT
Found at i:51701 original size:10 final size:10
Alignment explanation
Indices: 51686--51719 Score: 54
Period size: 10 Copynumber: 3.6 Consensus size: 10
51676 ACCGAATGAG
51686 AAAAAAAAT-
1 AAAAAAAATA
51695 -AAAAAAATA
1 AAAAAAAATA
51704 AAAAAAAATA
1 AAAAAAAATA
51714 AAAAAA
1 AAAAAA
51720 CTCAACAGGT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
8 8 0.35
10 15 0.65
ACGTcount: A:0.91, C:0.00, G:0.00, T:0.09
Consensus pattern (10 bp):
AAAAAAAATA
Found at i:52500 original size:16 final size:16
Alignment explanation
Indices: 52479--52514 Score: 63
Period size: 16 Copynumber: 2.2 Consensus size: 16
52469 GATTTGCTAT
*
52479 TACACCTCTAATCCAA
1 TACACCTCTAATCAAA
52495 TACACCTCTAATCAAA
1 TACACCTCTAATCAAA
52511 TACA
1 TACA
52515 GCGAACCAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.42, C:0.33, G:0.00, T:0.25
Consensus pattern (16 bp):
TACACCTCTAATCAAA
Found at i:55335 original size:29 final size:26
Alignment explanation
Indices: 55271--55341 Score: 72
Period size: 29 Copynumber: 2.6 Consensus size: 26
55261 GGAAAAATTA
55271 TTAAAA-TTTAAAAGAAAATTAAAATC
1 TTAAAATTTTAAAA-AAAATTAAAATC
*
55297 TCAAACATTTTAAAAAATATATATAAAATC
1 TTAAA-ATTTTAAAAAA-A-AT-TAAAATC
*
55327 TTAAAATTTTCAAAA
1 TTAAAATTTTAAAAA
55342 GTTTATAATT
Statistics
Matches: 37, Mismatches: 3, Indels: 7
0.79 0.06 0.15
Matches are distributed among these distances:
26 4 0.11
27 3 0.08
28 8 0.22
29 11 0.30
30 11 0.30
ACGTcount: A:0.58, C:0.07, G:0.01, T:0.34
Consensus pattern (26 bp):
TTAAAATTTTAAAAAAAATTAAAATC
Found at i:58042 original size:28 final size:28
Alignment explanation
Indices: 58010--58079 Score: 86
Period size: 28 Copynumber: 2.5 Consensus size: 28
58000 TAATAAGTTC
*
58010 GCACACTTAGTGCTTAATAATCAAACTA
1 GCACACTTAGTGCTTAACAATCAAACTA
* * * *
58038 GCACACTTAGTGCTTTACCATTAAACTC
1 GCACACTTAGTGCTTAACAATCAAACTA
*
58066 GCACATTTAGTGCT
1 GCACACTTAGTGCT
58080 AATCTCATTA
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 36 1.00
ACGTcount: A:0.31, C:0.24, G:0.13, T:0.31
Consensus pattern (28 bp):
GCACACTTAGTGCTTAACAATCAAACTA
Found at i:62427 original size:20 final size:20
Alignment explanation
Indices: 62402--62444 Score: 68
Period size: 20 Copynumber: 2.1 Consensus size: 20
62392 ATATTATAAT
* *
62402 TAGTTGTGATTCCCTAATTC
1 TAGTTGTAATCCCCTAATTC
62422 TAGTTGTAATCCCCTAATTC
1 TAGTTGTAATCCCCTAATTC
62442 TAG
1 TAG
62445 GATAGTTCCT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.23, C:0.21, G:0.14, T:0.42
Consensus pattern (20 bp):
TAGTTGTAATCCCCTAATTC
Found at i:68661 original size:124 final size:124
Alignment explanation
Indices: 68448--68811 Score: 577
Period size: 124 Copynumber: 2.9 Consensus size: 124
68438 GGTCCGGGAA
* * * *
68448 GAAATAATTTCTTTTGACCTTTCTGAGCAAATAGTATAAAATTGCTTTTAGCAGGATGCTATTTG
1 GAAATAATTTTTTTTGACATTTCTGAGCAAATAGTATAAAATCGCTTCTAGCAGGATGCTATTTG
* *
68513 AGAAGAAATTTTGAAATCGCGCCCTCGTGGACGCACTCTTGCTACAGTAGGTCATGGAT
66 AGAAGAAATTTTGAAATCGCGCCCTCGTGGACGCGCTTTTGCTACAGTAGGTCATGGAT
* *
68572 GAAATAATTTTTTTTAACGTTTCTGAGCAAATAGTATAAAATCGCTTCTAGCAGGATGCTATTTG
1 GAAATAATTTTTTTTGACATTTCTGAGCAAATAGTATAAAATCGCTTCTAGCAGGATGCTATTTG
* *
68637 AGAAGAAATTTTGAAATTGTGCCCTCGTGGACGCGCTTTTGCTACAGTAGGTCATGGAT
66 AGAAGAAATTTTGAAATCGCGCCCTCGTGGACGCGCTTTTGCTACAGTAGGTCATGGAT
* *
68696 GAAATAAATTTTTTTGACATTTCTGAGCAAATAGTATAAATTCGCTTCTAGCAGGATGCTATTTG
1 GAAATAATTTTTTTTGACATTTCTGAGCAAATAGTATAAAATCGCTTCTAGCAGGATGCTATTTG
* *
68761 AGAAG-AATTTGTGAAAATCGCGCCCTTGGGGACGCGCTTTTGCTACAGTAG
66 AGAAGAAATTT-TG-AAATCGCGCCCTCGTGGACGCGCTTTTGCTACAGTAG
68812 CCTGTTTGGG
Statistics
Matches: 221, Mismatches: 17, Indels: 3
0.92 0.07 0.01
Matches are distributed among these distances:
123 5 0.02
124 183 0.83
125 33 0.15
ACGTcount: A:0.29, C:0.16, G:0.22, T:0.34
Consensus pattern (124 bp):
GAAATAATTTTTTTTGACATTTCTGAGCAAATAGTATAAAATCGCTTCTAGCAGGATGCTATTTG
AGAAGAAATTTTGAAATCGCGCCCTCGTGGACGCGCTTTTGCTACAGTAGGTCATGGAT
Found at i:72811 original size:18 final size:18
Alignment explanation
Indices: 72788--72827 Score: 71
Period size: 18 Copynumber: 2.2 Consensus size: 18
72778 GACTCGGAAA
*
72788 AGGATACATATAAGGGTT
1 AGGATACATATAAGGGAT
72806 AGGATACATATAAGGGAT
1 AGGATACATATAAGGGAT
72824 AGGA
1 AGGA
72828 AACGCACCTG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.42, C:0.05, G:0.30, T:0.23
Consensus pattern (18 bp):
AGGATACATATAAGGGAT
Found at i:73490 original size:7 final size:7
Alignment explanation
Indices: 73478--73508 Score: 53
Period size: 7 Copynumber: 4.4 Consensus size: 7
73468 TATTAGTTAT
73478 ATACTAA
1 ATACTAA
73485 ATACTAA
1 ATACTAA
73492 ATACTAA
1 ATACTAA
*
73499 ATACAAA
1 ATACTAA
73506 ATA
1 ATA
73509 TCTATTTGCA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 23 1.00
ACGTcount: A:0.61, C:0.13, G:0.00, T:0.26
Consensus pattern (7 bp):
ATACTAA
Found at i:74696 original size:51 final size:51
Alignment explanation
Indices: 74640--74739 Score: 148
Period size: 51 Copynumber: 2.0 Consensus size: 51
74630 TTAAAAAAGG
* * *
74640 AAATTGAGAGCAAATTGAAATTAAATATGGCTTTGA-GAGATTTTTGGAATA
1 AAATTGAGAGCAAATTGAAATTAAAAATGGATTT-ATGAGAATTTTGGAATA
*
74691 AAATTGAGAGGAAATTGAAATTAAAAATGGATTTATGAGAATTTTGGAA
1 AAATTGAGAGCAAATTGAAATTAAAAATGGATTTATGAGAATTTTGGAA
74740 GGGGTATTTA
Statistics
Matches: 44, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
50 1 0.02
51 43 0.98
ACGTcount: A:0.44, C:0.02, G:0.22, T:0.32
Consensus pattern (51 bp):
AAATTGAGAGCAAATTGAAATTAAAAATGGATTTATGAGAATTTTGGAATA
Found at i:75736 original size:9 final size:9
Alignment explanation
Indices: 75722--75828 Score: 83
Period size: 9 Copynumber: 11.6 Consensus size: 9
75712 ATTAGAAGAA
75722 AAAAATTAT
1 AAAAATTAT
*
75731 AAAAATTGTAA
1 AAAAA-T-TAT
*
75742 AAAAATTGT
1 AAAAATTAT
**
75751 AAATTTTAT
1 AAAAATTAT
*
75760 AAAAATCAT
1 AAAAATTAT
75769 AAAAATTAT
1 AAAAATTAT
75778 -AAAATATAT
1 AAAAAT-TAT
75787 AAAAATTAT
1 AAAAATTAT
*
75796 -AAAATTTT
1 AAAAATTAT
* *
75804 ATAAAGTCAT
1 A-AAAATTAT
75814 ACAAAATTAT
1 A-AAAATTAT
75824 AAAAA
1 AAAAA
75829 ATGTAAAGAA
Statistics
Matches: 75, Mismatches: 17, Indels: 12
0.72 0.16 0.12
Matches are distributed among these distances:
8 12 0.16
9 36 0.48
10 20 0.27
11 7 0.09
ACGTcount: A:0.62, C:0.03, G:0.03, T:0.33
Consensus pattern (9 bp):
AAAAATTAT
Found at i:75918 original size:21 final size:20
Alignment explanation
Indices: 75887--75930 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 20
75877 AAAAGAAGTA
75887 TTTTATGATTTTTCTATAAT
1 TTTTATGATTTTTCTATAAT
* *
75907 TTTTATTGATTTTTTTATCAT
1 TTTTA-TGATTTTTCTATAAT
75928 TTT
1 TTT
75931 CCTTCGCATG
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 5 0.24
21 16 0.76
ACGTcount: A:0.20, C:0.05, G:0.05, T:0.70
Consensus pattern (20 bp):
TTTTATGATTTTTCTATAAT
Found at i:76088 original size:20 final size:20
Alignment explanation
Indices: 76065--76107 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
76055 TTTTCTATGA
76065 TTTTTATAAATTTTACAATT
1 TTTTTATAAATTTTACAATT
** *
76085 TTTTTATATTTTTTACGATT
1 TTTTTATAAATTTTACAATT
76105 TTT
1 TTT
76108 ACAAATTTTT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.26, C:0.05, G:0.02, T:0.67
Consensus pattern (20 bp):
TTTTTATAAATTTTACAATT
Found at i:79752 original size:24 final size:25
Alignment explanation
Indices: 79701--79760 Score: 70
Period size: 24 Copynumber: 2.4 Consensus size: 25
79691 CCGGGCAATA
*
79701 TAACGGGAAGCTCACAAAGAGCCTT
1 TAACGGGTAGCTCACAAAGAGCCTT
*
79726 TAACGGGTAGCT-ACGAAGAGCAC-T
1 TAACGGGTAGCTCACAAAGAGC-CTT
*
79750 TAATGGGTAGC
1 TAACGGGTAGC
79761 ACCGGAGCCA
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
24 19 0.61
25 12 0.39
ACGTcount: A:0.33, C:0.20, G:0.28, T:0.18
Consensus pattern (25 bp):
TAACGGGTAGCTCACAAAGAGCCTT
Found at i:90079 original size:48 final size:49
Alignment explanation
Indices: 89978--90094 Score: 139
Period size: 48 Copynumber: 2.4 Consensus size: 49
89968 TAATCACTTT
* * *
89978 AATATTAAATTAATATAATATTTAACAAGATAAATATTAGATTAAATTT
1 AATATTAAATTAATAAAATATCTAACAAGATAAATATTAGATTAAATTA
** *
90027 AATATTAAATTAATAAAATA-CTATTAAGATAAGTATTCA-ATTAAATTA
1 AATATTAAATTAATAAAATATCTAACAAGATAAATATT-AGATTAAATTA
* *
90075 AATATTAAACTATTAAAATA
1 AATATTAAATTAATAAAATA
90095 ATACTTTTTG
Statistics
Matches: 59, Mismatches: 8, Indels: 3
0.84 0.11 0.04
Matches are distributed among these distances:
48 39 0.66
49 20 0.34
ACGTcount: A:0.55, C:0.03, G:0.03, T:0.38
Consensus pattern (49 bp):
AATATTAAATTAATAAAATATCTAACAAGATAAATATTAGATTAAATTA
Found at i:90530 original size:9 final size:9
Alignment explanation
Indices: 90516--90540 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
90506 TCATATTGAT
90516 TTTAATTCA
1 TTTAATTCA
90525 TTTAATTCA
1 TTTAATTCA
90534 TTTAATT
1 TTTAATT
90541 TTACTGGATC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.32, C:0.08, G:0.00, T:0.60
Consensus pattern (9 bp):
TTTAATTCA
Found at i:94560 original size:19 final size:20
Alignment explanation
Indices: 94536--94574 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 20
94526 TATTAGAGAT
94536 ATTTTAAT-GATATTTTATA
1 ATTTTAATAGATATTTTATA
94555 ATTTTAATGAGATATTTTAT
1 ATTTTAAT-AGATATTTTAT
94575 TATTATTTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 8 0.44
21 10 0.56
ACGTcount: A:0.36, C:0.00, G:0.08, T:0.56
Consensus pattern (20 bp):
ATTTTAATAGATATTTTATA
Found at i:96789 original size:23 final size:24
Alignment explanation
Indices: 96723--96789 Score: 57
Period size: 23 Copynumber: 2.8 Consensus size: 24
96713 TTCCCATTGG
* *
96723 TTGGCTCTTTGTGAGCTTCTTGATA
1 TTGGCTCTCT-TGAACTTCTTGATA
**
96748 TATGGCTCTC-CAAAGCTTCTT-ATA
1 T-TGGCTCTCTTGAA-CTTCTTGATA
96772 TTGGCTCTCTTGAACTTC
1 TTGGCTCTCTTGAACTTC
96790 CCTATATATG
Statistics
Matches: 33, Mismatches: 6, Indels: 8
0.70 0.13 0.17
Matches are distributed among these distances:
23 12 0.36
24 7 0.21
25 7 0.21
26 7 0.21
ACGTcount: A:0.16, C:0.22, G:0.18, T:0.43
Consensus pattern (24 bp):
TTGGCTCTCTTGAACTTCTTGATA
Found at i:99132 original size:16 final size:16
Alignment explanation
Indices: 99107--99145 Score: 69
Period size: 16 Copynumber: 2.4 Consensus size: 16
99097 CACTTACACT
99107 AATTACCTAATTACAA
1 AATTACCTAATTACAA
*
99123 AATTAGCTAATTACAA
1 AATTACCTAATTACAA
99139 AATTACC
1 AATTACC
99146 GTTACCTAAC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.49, C:0.18, G:0.03, T:0.31
Consensus pattern (16 bp):
AATTACCTAATTACAA
Found at i:101273 original size:16 final size:16
Alignment explanation
Indices: 101252--101293 Score: 66
Period size: 16 Copynumber: 2.6 Consensus size: 16
101242 ATTTGTAATG
101252 AAAAAAAATTTAAATT
1 AAAAAAAATTTAAATT
*
101268 AAAAAAAATTTAACTT
1 AAAAAAAATTTAAATT
101284 AATAAAAAAT
1 AA-AAAAAAT
101294 AACGAAAATT
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
16 17 0.71
17 7 0.29
ACGTcount: A:0.69, C:0.02, G:0.00, T:0.29
Consensus pattern (16 bp):
AAAAAAAATTTAAATT
Found at i:102367 original size:2 final size:2
Alignment explanation
Indices: 102360--102395 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
102350 TTCTTCCGCA
102360 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
102396 TTTTTTTTTT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:102427 original size:2 final size:2
Alignment explanation
Indices: 102422--102455 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
102412 TTCTTCCTCA
102422 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
102456 TATTTGCTTC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:103948 original size:29 final size:30
Alignment explanation
Indices: 103916--103986 Score: 87
Period size: 29 Copynumber: 2.4 Consensus size: 30
103906 GTTAATTTTT
103916 AAAATTTAAAAAAT-A-TAAGAATTATTTAA-
1 AAAATTTAAAAAATCATTAA-AATTA-TTAAC
*
103945 AAAAATT-AAAAATCATTAAAATTATTAAC
1 AAAATTTAAAAAATCATTAAAATTATTAAC
103974 AAAATTTAAAAAA
1 AAAATTTAAAAAA
103987 AATTATTTTT
Statistics
Matches: 36, Mismatches: 2, Indels: 7
0.80 0.04 0.16
Matches are distributed among these distances:
28 10 0.28
29 18 0.50
30 8 0.22
ACGTcount: A:0.65, C:0.03, G:0.01, T:0.31
Consensus pattern (30 bp):
AAAATTTAAAAAATCATTAAAATTATTAAC
Found at i:110242 original size:45 final size:45
Alignment explanation
Indices: 110174--110260 Score: 138
Period size: 45 Copynumber: 1.9 Consensus size: 45
110164 AACATATACT
* * * *
110174 CGGTGGATTCAGCACATAGCAACCACCTTATTAATCAATGATGTC
1 CGGTGGAATCAACACATAACAACCACCTTACTAATCAATGATGTC
110219 CGGTGGAATCAACACATAACAACCACCTTACTAATCAATGAT
1 CGGTGGAATCAACACATAACAACCACCTTACTAATCAATGAT
110261 ATTCGGTTCA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
45 38 1.00
ACGTcount: A:0.36, C:0.25, G:0.15, T:0.24
Consensus pattern (45 bp):
CGGTGGAATCAACACATAACAACCACCTTACTAATCAATGATGTC
Found at i:110333 original size:51 final size:50
Alignment explanation
Indices: 110274--110459 Score: 173
Period size: 51 Copynumber: 3.7 Consensus size: 50
110264 CGGTTCACAC
* *
110274 AGTAGCCTGCACATAGTACTACACATGTGACCATTACCATCCGATACATGT
1 AGTAGCCTGCACATAGTACTACACACGTGACCATTACCATCCG-TACACGT
* * * * * *
110325 AGTAGCCTGCACATAGTACTACACACGTGATCGA-AACTATCTGGTACGCAT
1 AGTAGCCTGCACATAGTACTACACACGTGA-CCATTACCATC-CGTACACGT
* * * *
110376 AATAGCCTGCACGTAGTACTACACATGCGACC-TGT--CATTCTCGTACACGT
1 AGTAGCCTGCACATAGTACTACACACGTGACCAT-TACCA-TC-CGTACACGT
*
110426 AGTAGCCTGCACATAGTAATACACACGTGACCAT
1 AGTAGCCTGCACATAGTACTACACACGTGACCAT
110460 CACTTTCACT
Statistics
Matches: 106, Mismatches: 23, Indels: 12
0.75 0.16 0.09
Matches are distributed among these distances:
49 1 0.01
50 37 0.35
51 65 0.61
52 3 0.03
ACGTcount: A:0.31, C:0.27, G:0.18, T:0.24
Consensus pattern (50 bp):
AGTAGCCTGCACATAGTACTACACACGTGACCATTACCATCCGTACACGT
Found at i:113618 original size:23 final size:24
Alignment explanation
Indices: 113592--113636 Score: 65
Period size: 23 Copynumber: 1.9 Consensus size: 24
113582 ATATCCCCAC
*
113592 ATGGAGTGTAG-GGTTGGATGGAG
1 ATGGAGTGTAGAGGCTGGATGGAG
*
113615 ATGGTGTGTAGAGGCTGGATGG
1 ATGGAGTGTAGAGGCTGGATGG
113637 GTAGGATTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 10 0.53
24 9 0.47
ACGTcount: A:0.20, C:0.02, G:0.51, T:0.27
Consensus pattern (24 bp):
ATGGAGTGTAGAGGCTGGATGGAG
Found at i:138429 original size:75 final size:75
Alignment explanation
Indices: 138304--138599 Score: 294
Period size: 75 Copynumber: 3.9 Consensus size: 75
138294 CCATTTATGC
* * * * * *
138304 GACTAGCGTTGGCCAAAATTTTCGTCAGTTTATGTGACTAGTGCTT-GGCACACCTTTATATTTG
1 GACTAGCGTTGGCCACAACTTTCATCAGTTTATCTAACTAGTG-TTGGGCACACCATTATATTTG
*
138368 TTGGTTCATTT
65 TTGGTTTATTT
** *
138379 GACTAGCGTTGGGCC-CAACTTTGGTCAGTTTATCTAATTAGTGTTGGGCACACCATTATATTTG
1 GACTAGCGTT-GGCCACAACTTTCATCAGTTTATCTAACTAGTGTTGGGCACACCATTATATTTG
* *
138443 TTGATTTATCT
65 TTGGTTTATTT
* * * * *
138454 GACTAGCGCTAGG-CGCAACTTTCATCAGTTTATATAACTAGTGCTGGGCACATCATTATATCTT
1 GACTAGCG-TTGGCCACAACTTTCATCAGTTTATCTAACTAGTGTTGGGCACACCATTATAT-TT
138518 -TTGGTTTATTT
64 GTTGGTTTATTT
* * * * * * * * *
138529 GACTAGCATTGGCCACAACTTCCATCAGTTTATCTGACCAGTGCTCGGAACATCATTATATATGT
1 GACTAGCGTTGGCCACAACTTTCATCAGTTTATCTAACTAGTGTTGGGCACACCATTATATTTGT
138594 TGGTTT
66 TGGTTT
138600 CCCCGACTAG
Statistics
Matches: 185, Mismatches: 29, Indels: 14
0.81 0.13 0.06
Matches are distributed among these distances:
74 7 0.04
75 171 0.92
76 7 0.04
ACGTcount: A:0.23, C:0.19, G:0.20, T:0.39
Consensus pattern (75 bp):
GACTAGCGTTGGCCACAACTTTCATCAGTTTATCTAACTAGTGTTGGGCACACCATTATATTTGT
TGGTTTATTT
Found at i:138586 original size:150 final size:150
Alignment explanation
Indices: 138323--138595 Score: 343
Period size: 150 Copynumber: 1.8 Consensus size: 150
138313 TGGCCAAAAT
* * * * * *
138323 TTTCGTCAGTTTATGTGACTAGTGCTTGGCACACCTTTATATTTGTTGGTTCATTTGACTAGCGT
1 TTTCATCAGTTTATATAACTAGTGCTGGGCACACCATTATATTTGTTGGTTCATTTGACTAGCAT
*** ** * * * *
138388 TGGGCCCAACTTTGGTCAGTTTATCTAATTAGTGTTGGGCACACCATTATATTTGTTGATTTATC
66 TGGGCCCAACTTCCATCAGTTTATCTAACCAGTGCTCGGAACACCATTATATATGTTGATTTATC
138453 TGACTAGCGCTAGGCGCAAC
131 TGACTAGCGCTAGGCGCAAC
* *
138473 TTTCATCAGTTTATATAACTAGTGCTGGGCACATCATTATATCTT-TTGGTTTATTTGACTAGCA
1 TTTCATCAGTTTATATAACTAGTGCTGGGCACACCATTATAT-TTGTTGGTTCATTTGACTAGCA
* *
138537 TT-GGCCACAACTTCCATCAGTTTATCTGACCAGTGCTCGGAACATCATTATATATGTTG
65 TTGGGCC-CAACTTCCATCAGTTTATCTAACCAGTGCTCGGAACACCATTATATATGTTG
138596 GTTTCCCCGA
Statistics
Matches: 102, Mismatches: 19, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
149 4 0.04
150 96 0.94
151 2 0.02
ACGTcount: A:0.22, C:0.19, G:0.19, T:0.39
Consensus pattern (150 bp):
TTTCATCAGTTTATATAACTAGTGCTGGGCACACCATTATATTTGTTGGTTCATTTGACTAGCAT
TGGGCCCAACTTCCATCAGTTTATCTAACCAGTGCTCGGAACACCATTATATATGTTGATTTATC
TGACTAGCGCTAGGCGCAAC
Found at i:149009 original size:20 final size:20
Alignment explanation
Indices: 148986--149131 Score: 57
Period size: 20 Copynumber: 7.3 Consensus size: 20
148976 CAAAGTACAA
148986 TCAGGGGCACGTATGTGCAT
1 TCAGGGGCACGTATGTGCAT
* * * *
149006 TCAGGGGTACCG-AAGTACAAA
1 TCAGGGGCA-CGTATGTGC-AT
*
149027 T-AGGGGCATGTATGTGCAT
1 TCAGGGGCACGTATGTGCAT
* * ** * * *
149046 TCATGGGTACCAAAGTACAA
1 TCAGGGGCACGTATGTGCAT
*
149066 ACAGGGGCACGTATGTGCAT
1 TCAGGGGCACGTATGTGCAT
* * ** * * *
149086 TTAGGGGTACCAAAGTACAAA
1 TCAGGGGCACGTATGTGC-AT
149107 T-AGGGGCACGTATGTGCAT
1 TCAGGGGCACGTATGTGCAT
149126 TC-GGGG
1 TCAGGGG
149132 GTACCGAAGT
Statistics
Matches: 81, Mismatches: 39, Indels: 13
0.61 0.29 0.10
Matches are distributed among these distances:
19 9 0.11
20 66 0.81
21 6 0.07
ACGTcount: A:0.29, C:0.17, G:0.32, T:0.22
Consensus pattern (20 bp):
TCAGGGGCACGTATGTGCAT
Found at i:149012 original size:40 final size:40
Alignment explanation
Indices: 148956--149151 Score: 270
Period size: 40 Copynumber: 4.9 Consensus size: 40
148946 AATAAGACAG
*
148956 GTATGTGCATTTAGGGGTACCAAAGTACAATCAGGGGCAC
1 GTATGTGCATTCAGGGGTACCAAAGTACAATCAGGGGCAC
* *
148996 GTATGTGCATTCAGGGGTACCGAAGTACAAAT-AGGGGCAT
1 GTATGTGCATTCAGGGGTACCAAAGTAC-AATCAGGGGCAC
* *
149036 GTATGTGCATTCATGGGTACCAAAGTACAAACAGGGGCAC
1 GTATGTGCATTCAGGGGTACCAAAGTACAATCAGGGGCAC
*
149076 GTATGTGCATTTAGGGGTACCAAAGTACAAAT-AGGGGCAC
1 GTATGTGCATTCAGGGGTACCAAAGTAC-AATCAGGGGCAC
* * * *
149116 GTATGTGCATTCGGGGGTACCGAAGTAAAAACAGGG
1 GTATGTGCATTCAGGGGTACCAAAGTACAATCAGGG
149152 TCACCAATAA
Statistics
Matches: 137, Mismatches: 15, Indels: 8
0.86 0.09 0.05
Matches are distributed among these distances:
39 4 0.03
40 128 0.93
41 5 0.04
ACGTcount: A:0.31, C:0.16, G:0.31, T:0.21
Consensus pattern (40 bp):
GTATGTGCATTCAGGGGTACCAAAGTACAATCAGGGGCAC
Found at i:149057 original size:80 final size:80
Alignment explanation
Indices: 148925--149151 Score: 321
Period size: 80 Copynumber: 2.9 Consensus size: 80
148915 ATATTATTTA
** * * * * *
148925 ATTCAGGATTACCAAAGTACAAATA-AGACAGGTATGTGCATTTAGGGGTACCAAAGTACAATCA
1 ATTCAGGGGTACCAAAGTACAAATAGGGGCACGTATGTGCATTCAGGGGTACCAAAGTACAAACA
148989 GGGGCACGTATGTGC
66 GGGGCACGTATGTGC
* * *
149004 ATTCAGGGGTACCGAAGTACAAATAGGGGCATGTATGTGCATTCATGGGTACCAAAGTACAAACA
1 ATTCAGGGGTACCAAAGTACAAATAGGGGCACGTATGTGCATTCAGGGGTACCAAAGTACAAACA
149069 GGGGCACGTATGTGC
66 GGGGCACGTATGTGC
* * * *
149084 ATTTAGGGGTACCAAAGTACAAATAGGGGCACGTATGTGCATTCGGGGGTACCGAAGTAAAAACA
1 ATTCAGGGGTACCAAAGTACAAATAGGGGCACGTATGTGCATTCAGGGGTACCAAAGTACAAACA
149149 GGG
66 GGG
149152 TCACCAATAA
Statistics
Matches: 131, Mismatches: 16, Indels: 1
0.89 0.11 0.01
Matches are distributed among these distances:
79 22 0.17
80 109 0.83
ACGTcount: A:0.33, C:0.16, G:0.29, T:0.21
Consensus pattern (80 bp):
ATTCAGGGGTACCAAAGTACAAATAGGGGCACGTATGTGCATTCAGGGGTACCAAAGTACAAACA
GGGGCACGTATGTGC
Found at i:149137 original size:120 final size:119
Alignment explanation
Indices: 148934--149151 Score: 348
Period size: 120 Copynumber: 1.8 Consensus size: 119
148924 AATTCAGGAT
* *
148934 TACCAAAGTACAAATAAGACAGGTATGTGCATTTAGGGGTACCAAAGTACAATCAGGGGCACGTA
1 TACCAAAGTACAAACAAGACACGTATGTGCATTTAGGGGTACCAAAGTACAATCAGGGGCACGTA
* *
148999 TGTGCATTCAGGGGTACCGAAGTACAAATAGGGGCATGTATGTGCATTCATGGG
66 TGTGCATTCAGGGGTACCGAAGTAAAAACAGGGGCATGTATGTGCATTCATGGG
* *
149053 TACCAAAGTACAAACAGGGGCACGTATGTGCATTTAGGGGTACCAAAGTACAAAT-AGGGGCACG
1 TACCAAAGTACAAACA-AGACACGTATGTGCATTTAGGGGTACCAAAGTAC-AATCAGGGGCACG
*
149117 TATGTGCATTCGGGGGTACCGAAGTAAAAACAGGG
64 TATGTGCATTCAGGGGTACCGAAGTAAAAACAGGG
149152 TCACCAATAA
Statistics
Matches: 90, Mismatches: 7, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
119 15 0.17
120 72 0.80
121 3 0.03
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.21
Consensus pattern (119 bp):
TACCAAAGTACAAACAAGACACGTATGTGCATTTAGGGGTACCAAAGTACAATCAGGGGCACGTA
TGTGCATTCAGGGGTACCGAAGTAAAAACAGGGGCATGTATGTGCATTCATGGG
Found at i:158001 original size:36 final size:36
Alignment explanation
Indices: 157950--158182 Score: 324
Period size: 36 Copynumber: 6.5 Consensus size: 36
157940 CTCCCTGTTT
* *
157950 TGGTGTGTTTAGGATGGATTAGCTCTTATAAGCATC
1 TGGTGTGTTTCGGATGGATTAGCTCTTATGAGCATC
* * *
157986 TGGTCTATTTCGGAT-GATTAGCTCTTATGAACATC
1 TGGTGTGTTTCGGATGGATTAGCTCTTATGAGCATC
* **
158021 TGGTGTGTTTCGAATGGATTAAATCTTATGAGCATC
1 TGGTGTGTTTCGGATGGATTAGCTCTTATGAGCATC
* ** * *
158057 CGGCATGCTTCGGATGGATTAGCTCTTATGAGCATA
1 TGGTGTGTTTCGGATGGATTAGCTCTTATGAGCATC
158093 TGGTGTGTTTCGGATGGATTAGCTCTTATGAGCATC
1 TGGTGTGTTTCGGATGGATTAGCTCTTATGAGCATC
158129 TGGTGTGTTTCGGATGGATTAGCTCTTATGAGCATC
1 TGGTGTGTTTCGGATGGATTAGCTCTTATGAGCATC
* *
158165 TGGTGTGCTTCGGTTGGA
1 TGGTGTGTTTCGGATGGA
158183 ATATTGATAT
Statistics
Matches: 170, Mismatches: 26, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
35 30 0.18
36 140 0.82
ACGTcount: A:0.20, C:0.14, G:0.28, T:0.38
Consensus pattern (36 bp):
TGGTGTGTTTCGGATGGATTAGCTCTTATGAGCATC
Found at i:160964 original size:19 final size:20
Alignment explanation
Indices: 160940--160977 Score: 69
Period size: 19 Copynumber: 1.9 Consensus size: 20
160930 TGAGCTGGTT
160940 GGAGCTGAAA-TGAGCTAAG
1 GGAGCTGAAATTGAGCTAAG
160959 GGAGCTGAAATTGAGCTAA
1 GGAGCTGAAATTGAGCTAA
160978 AATCAGCTTG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 10 0.56
20 8 0.44
ACGTcount: A:0.37, C:0.11, G:0.34, T:0.18
Consensus pattern (20 bp):
GGAGCTGAAATTGAGCTAAG
Found at i:162038 original size:21 final size:21
Alignment explanation
Indices: 162009--162048 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
161999 ATAAACAATA
* *
162009 TAATGGTTTTGCCTTTTAACT
1 TAATAGTTTTGACTTTTAACT
162030 TAATAGTTTTGACTTTTAA
1 TAATAGTTTTGACTTTTAA
162049 TTTTAGAAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.25, C:0.10, G:0.12, T:0.53
Consensus pattern (21 bp):
TAATAGTTTTGACTTTTAACT
Found at i:164832 original size:25 final size:25
Alignment explanation
Indices: 164798--164847 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
164788 TTGAAATATG
164798 ATTGGTTGAATATTTTATTATTATT
1 ATTGGTTGAATATTTTATTATTATT
164823 ATTGGTTGAATATTTTATTATTATT
1 ATTGGTTGAATATTTTATTATTATT
164848 GTTTTATTAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.28, C:0.00, G:0.12, T:0.60
Consensus pattern (25 bp):
ATTGGTTGAATATTTTATTATTATT
Found at i:179346 original size:7 final size:7
Alignment explanation
Indices: 179304--179348 Score: 54
Period size: 7 Copynumber: 6.4 Consensus size: 7
179294 AAAAAATAAA
*
179304 TTAGAGT
1 TTAGGGT
179311 TTAGGGT
1 TTAGGGT
* *
179318 CTAGGGC
1 TTAGGGT
*
179325 TTAGGGC
1 TTAGGGT
179332 TTAGGGT
1 TTAGGGT
179339 TTAGGGT
1 TTAGGGT
179346 TTA
1 TTA
179349 ATTTTTTTTA
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
7 33 1.00
ACGTcount: A:0.18, C:0.07, G:0.38, T:0.38
Consensus pattern (7 bp):
TTAGGGT
Found at i:184930 original size:25 final size:25
Alignment explanation
Indices: 184893--184995 Score: 79
Period size: 25 Copynumber: 4.2 Consensus size: 25
184883 TAGCTCGAGA
** * *
184893 GAGCTTATTGTTATTCAGCTTGTAT
1 GAGCTTACCGTTACTCAGCTCGTAT
*
184918 GAGGTTACCGTTACTCAGCTCGTAT
1 GAGCTTACCGTTACTCAGCTCGTAT
*
184943 GAGCTTACCGATTA--CAGCTCGTAA
1 GAGCTTACCG-TTACTCAGCTCGTAT
**
184967 GAG-TATACCGATT-CAGAGCTCGTAT
1 GAGCT-TACCG-TTACTCAGCTCGTAT
184992 GAGC
1 GAGC
184996 ATACATGTAT
Statistics
Matches: 64, Mismatches: 9, Indels: 9
0.78 0.11 0.11
Matches are distributed among these distances:
23 1 0.02
24 20 0.31
25 40 0.62
26 3 0.05
ACGTcount: A:0.24, C:0.20, G:0.23, T:0.32
Consensus pattern (25 bp):
GAGCTTACCGTTACTCAGCTCGTAT
Found at i:184965 original size:24 final size:24
Alignment explanation
Indices: 184908--184995 Score: 90
Period size: 25 Copynumber: 3.6 Consensus size: 24
184898 TATTGTTATT
* *
184908 CAGCTTGTATGAGGTTACCG-TTA
1 CAGCTCGTATGAGCTTACCGATTA
184931 CTCAGCTCGTATGAGCTTACCGATTA
1 --CAGCTCGTATGAGCTTACCGATTA
*
184957 CAGCTCGTAAGAG-TATACCGATTCA
1 CAGCTCGTATGAGCT-TACCGATT-A
*
184982 GAGCTCGTATGAGC
1 CAGCTCGTATGAGC
184996 ATACATGTAT
Statistics
Matches: 54, Mismatches: 5, Indels: 7
0.82 0.08 0.11
Matches are distributed among these distances:
23 1 0.02
24 20 0.37
25 30 0.56
26 3 0.06
ACGTcount: A:0.25, C:0.23, G:0.24, T:0.28
Consensus pattern (24 bp):
CAGCTCGTATGAGCTTACCGATTA
Found at i:184999 original size:25 final size:24
Alignment explanation
Indices: 184933--184999 Score: 89
Period size: 24 Copynumber: 2.8 Consensus size: 24
184923 TACCGTTACT
*
184933 CAGCTCGTATGAGCTTACCGATTA
1 CAGCTCGTATGAGCATACCGATTA
* *
184957 CAGCTCGTAAGAGTATACCGATTCA
1 CAGCTCGTATGAGCATACCGATT-A
*
184982 GAGCTCGTATGAGCATAC
1 CAGCTCGTATGAGCATAC
185000 ATGTATAGGA
Statistics
Matches: 36, Mismatches: 6, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
24 20 0.56
25 16 0.44
ACGTcount: A:0.28, C:0.24, G:0.22, T:0.25
Consensus pattern (24 bp):
CAGCTCGTATGAGCATACCGATTA
Found at i:190927 original size:25 final size:26
Alignment explanation
Indices: 190899--190975 Score: 97
Period size: 25 Copynumber: 3.0 Consensus size: 26
190889 GTTACTGATT
190899 CTCAGCTCGAGA-GAGCTTACCGTTA
1 CTCAGCTCGAGATGAGCTTACCGTTA
*
190924 CTCAGCTC-ATATGAGCTTACCGTTA
1 CTCAGCTCGAGATGAGCTTACCGTTA
* *
190949 CTCAGCTCG-TATGAGCTTTCCGATTA
1 CTCAGCTCGAGATGAGCTTACCG-TTA
190975 C
1 C
190976 AGCTCGTAAA
Statistics
Matches: 47, Mismatches: 2, Indels: 5
0.87 0.04 0.09
Matches are distributed among these distances:
24 2 0.04
25 41 0.87
26 4 0.09
ACGTcount: A:0.22, C:0.29, G:0.19, T:0.30
Consensus pattern (26 bp):
CTCAGCTCGAGATGAGCTTACCGTTA
Found at i:190983 original size:24 final size:24
Alignment explanation
Indices: 190911--190983 Score: 94
Period size: 25 Copynumber: 3.0 Consensus size: 24
190901 CAGCTCGAGA
*
190911 GAGCTTACCGTTACTCAGCTCATAT
1 GAGCTTACCGTTAC-CAGCTCGTAT
190936 GAGCTTACCGTTACTCAGCTCGTAT
1 GAGCTTACCGTTAC-CAGCTCGTAT
*
190961 GAGCTTTCCGATTA-CAGCTCGTA
1 GAGCTTACCG-TTACCAGCTCGTA
190984 AAAACATACC
Statistics
Matches: 45, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
24 9 0.20
25 33 0.73
26 3 0.07
ACGTcount: A:0.22, C:0.27, G:0.19, T:0.32
Consensus pattern (24 bp):
GAGCTTACCGTTACCAGCTCGTAT
Found at i:191016 original size:25 final size:24
Alignment explanation
Indices: 190926--191017 Score: 78
Period size: 25 Copynumber: 3.8 Consensus size: 24
190916 TACCGTTACT
* *
190926 CAGCTCATATGAGCTTACCG-TTA
1 CAGCTCGTATGAGCATACCGATTA
* *
190949 CTCAGCTCGTATGAGCTTTCCGATTA
1 --CAGCTCGTATGAGCATACCGATTA
** *
190975 CAGCTCGTAAAAACATACCGATTCA
1 CAGCTCGTATGAGCATACCGATT-A
*
191000 GAGCTCGTATGAGCATAC
1 CAGCTCGTATGAGCATAC
191018 ATATATATGA
Statistics
Matches: 54, Mismatches: 11, Indels: 4
0.78 0.16 0.06
Matches are distributed among these distances:
24 18 0.33
25 33 0.61
26 3 0.06
ACGTcount: A:0.28, C:0.26, G:0.18, T:0.27
Consensus pattern (24 bp):
CAGCTCGTATGAGCATACCGATTA
Found at i:192565 original size:19 final size:19
Alignment explanation
Indices: 192541--192578 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
192531 TGAGCGTGGT
192541 TATACTATATGTATAAAGC
1 TATACTATATGTATAAAGC
192560 TATACTATATGTATAAAGC
1 TATACTATATGTATAAAGC
192579 ATGCTTTTGG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.42, C:0.11, G:0.11, T:0.37
Consensus pattern (19 bp):
TATACTATATGTATAAAGC
Found at i:196722 original size:44 final size:44
Alignment explanation
Indices: 196659--196834 Score: 352
Period size: 44 Copynumber: 4.0 Consensus size: 44
196649 GTGGAAACTT
196659 GGAAAAAAACTTTAATACATCCATGTTGAATACGTACTTATATC
1 GGAAAAAAACTTTAATACATCCATGTTGAATACGTACTTATATC
196703 GGAAAAAAACTTTAATACATCCATGTTGAATACGTACTTATATC
1 GGAAAAAAACTTTAATACATCCATGTTGAATACGTACTTATATC
196747 GGAAAAAAACTTTAATACATCCATGTTGAATACGTACTTATATC
1 GGAAAAAAACTTTAATACATCCATGTTGAATACGTACTTATATC
196791 GGAAAAAAACTTTAATACATCCATGTTGAATACGTACTTATATC
1 GGAAAAAAACTTTAATACATCCATGTTGAATACGTACTTATATC
196835 TAACACTCAC
Statistics
Matches: 132, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 132 1.00
ACGTcount: A:0.41, C:0.16, G:0.11, T:0.32
Consensus pattern (44 bp):
GGAAAAAAACTTTAATACATCCATGTTGAATACGTACTTATATC
Found at i:199410 original size:12 final size:10
Alignment explanation
Indices: 199395--199442 Score: 53
Period size: 11 Copynumber: 4.7 Consensus size: 10
199385 AATAAAAATG
199395 TAAAAATATAT
1 TAAAAAT-TAT
*
199406 TTAAAATTAT
1 TAAAAATTAT
199416 TAAAAATTAT
1 TAAAAATTAT
*
199426 AAAAAAATTA-
1 -TAAAAATTAT
199436 TAAAAAT
1 TAAAAAT
199443 GGTAATATTT
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
9 6 0.19
10 12 0.38
11 14 0.44
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (10 bp):
TAAAAATTAT
Found at i:199421 original size:10 final size:10
Alignment explanation
Indices: 199348--199442 Score: 54
Period size: 10 Copynumber: 9.7 Consensus size: 10
199338 ATACAAAAAA
* *
199348 TAAAAATCAA
1 TAAAAATTAT
*
199358 TAAAAGTTA-
1 TAAAAATTAT
*
199367 TAAAAACTAT
1 TAAAAATTAT
** *
199377 TAAATTTTAA
1 TAAAAATTAT
*
199387 TAAAAA-T-G
1 TAAAAATTAT
199395 TAAAAATATAT
1 TAAAAAT-TAT
*
199406 TTAAAATTAT
1 TAAAAATTAT
199416 TAAAAATTAT
1 TAAAAATTAT
*
199426 AAAAAAATTA-
1 -TAAAAATTAT
199436 TAAAAAT
1 TAAAAAT
199443 GGTAATATTT
Statistics
Matches: 64, Mismatches: 16, Indels: 11
0.70 0.18 0.12
Matches are distributed among these distances:
8 6 0.09
9 14 0.22
10 30 0.47
11 14 0.22
ACGTcount: A:0.62, C:0.02, G:0.02, T:0.34
Consensus pattern (10 bp):
TAAAAATTAT
Found at i:199431 original size:11 final size:11
Alignment explanation
Indices: 199408--199478 Score: 54
Period size: 11 Copynumber: 6.1 Consensus size: 11
199398 AAATATATTT
*
199408 AAAATTAT-TA
1 AAAATTATAAA
199418 AAAATTATAAA
1 AAAATTATAAA
199429 AAAATTATAAA
1 AAAATTATAAA
* *
199440 AATGGTAATATTTATA
1 AA----AAT-TATAAA
*
199456 AAAATCATAAA
1 AAAATTATAAA
199467 AAAATTATAAA
1 AAAATTATAAA
199478 A
1 A
199479 TGTCTCAAAA
Statistics
Matches: 48, Mismatches: 7, Indels: 11
0.73 0.11 0.17
Matches are distributed among these distances:
10 8 0.17
11 28 0.58
12 3 0.06
15 3 0.06
16 6 0.12
ACGTcount: A:0.65, C:0.01, G:0.03, T:0.31
Consensus pattern (11 bp):
AAAATTATAAA
Done.