Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold4323

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 330

Length: 550
ACGTcount: A:0.29, C:0.11, G:0.08, T:0.53


Found at i:69 original size:3 final size:3

Alignment explanation


    Indices: 52--90  Score: 62
    Period size: 3  Copynumber: 13.0  Consensus size: 3

         42 CTTTATTACT

                                                                
         52 TTA TTA CTT- TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
          1 TTA TTA -TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA

         91 CTACTACTAC


Statistics
Matches: 34,  Mismatches: 0, Indels: 4
        0.89            0.00        0.11

Matches are distributed among these distances:
   2    2  0.06
   3   30  0.88
   4    2  0.06

ACGTcount: A:0.31, C:0.03, G:0.00, T:0.67


Consensus pattern (3 bp):   
TTA

Done.