Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold536
Parameters: 2 7 7 80 10 50 1000
Length:  82518

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1492--1586
27
3.5
27
78
7
93
29
20
15
34
1.93
1506--1623
55
2.2
55
83
7
143
28
17
16
37
1.92
4447--4474
2
14.0
2
100
0
56
50
0
0
50
1.00
4735--4782
21
2.4
19
75
6
51
68
2
0
29
1.01
11817--12636
158
5.2
158
100
0
1640
25
23
18
33
1.97
16597--16631
18
1.9
18
94
0
61
28
5
0
65
1.15
17857--17914
27
2.1
27
87
0
80
27
22
22
27
1.99
22245--22302
27
2.1
27
90
0
89
32
18
20
27
1.97
30935--31106
41
4.2
41
93
0
281
48
5
23
22
1.71
31086--31143
24
2.4
25
80
8
66
53
6
24
15
1.66
34148--34435
29
9.9
29
82
2
299
36
13
27
21
1.92
34148--34434
87
3.3
87
84
5
355
36
13
27
21
1.92
42975--43013
20
2.0
20
90
10
62
33
0
0
66
0.92
45474--45506
2
16.5
2
100
0
66
48
0
0
51
1.00
48372--48434
22
2.9
22
77
13
69
22
4
4
68
1.28
50617--50643
14
1.9
14
100
0
54
74
0
0
25
0.83
51877--51982
10
10.9
10
69
20
55
61
5
0
33
1.20
51891--51984
19
4.8
19
75
14
68
62
5
0
31
1.17
51910--51984
29
2.5
30
81
12
93
64
5
0
30
1.16
52459--52626
86
2.0
86
93
0
291
25
18
10
45
1.82
57129--57162
17
2.1
17
88
5
52
50
0
17
32
1.47
57238--57274
19
1.9
19
100
0
74
32
10
10
45
1.74
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
65408--65441
18
1.9
17
88
5
50
55
23
0
20
1.43
66581--70590
113
35.7
113
97
1
7106
33
12
15
37
1.86
79481--79530
3
16.7
3
100
0
100
68
0
32
0
0.90

Tables:   1

The End!