Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold577
Parameters: 2 7 7 80 10 50 1000
Length:  68063

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1368--1436
33
2.1
33
97
0
129
36
5
8
49
1.58
1714--1764
25
2.1
25
82
7
61
52
1
1
43
1.23
1869--1932
22
2.8
24
80
17
82
54
1
3
40
1.25
16246--16276
3
10.3
3
92
0
53
32
3
0
64
1.09
21199--21229
14
2.3
13
94
5
53
70
0
16
12
1.16
21539--21610
35
2.1
35
100
0
144
27
26
13
31
1.94
22542--23178
133
4.8
131
84
3
799
29
19
23
28
1.98
22532--23178
266
2.4
265
89
2
951
29
19
22
28
1.98
23071--23285
107
2.0
107
91
1
351
28
21
20
28
1.98
22942--23420
240
2.0
240
86
4
680
29
20
22
27
1.98
23180--23936
133
5.7
133
87
2
972
29
20
24
26
1.99
22804--23936
373
3.0
376
87
5
1471
29
19
23
27
1.98
22676--23677
506
2.0
506
89
2
1523
29
19
23
27
1.98
24492--24537
23
2.0
22
87
4
65
10
43
23
21
1.84
25476--25505
3
10.0
3
92
0
51
30
0
3
66
1.07
27032--27095
22
2.8
24
80
17
82
54
1
3
40
1.25
28736--28798
30
2.1
30
87
0
90
38
17
25
19
1.93
28794--28824
16
1.9
16
93
0
53
25
19
32
22
1.97
67824--67884
29
2.1
28
84
3
77
21
0
24
54
1.45

Tables:   1

The End!