Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: scaffold887
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 4663
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.28
Found at i:350 original size:169 final size:168
Alignment explanation
Indices: 1--350 Score: 488
Period size: 168 Copynumber: 2.1 Consensus size: 168
* *
1 GACTTGAAATAGCTGAAGTGGAGCGGATTAAAGCTATGAGCTGCGAAACCTATCCCTTTGGCTTT
1 GACTTGAAATAGCTGAAGTGGAGCGGATTAAAGCTATGAGCAGCGAAACCTATCCCTTTGGCATT
* * *
66 ATAGTGGAACAGATTAATTGTGAAAGAAGCGAATCTTGTTTCCCTACATTGCAGCAGAGCAGATT
66 ATAGTGGAACAGATTAATAGTGAAAGAAGCAAATCTTCTTTCCCTACATTGCAGCAGAGCAGATT
* ** *
131 AAAGCTGAGGGCAGCGAATCTTATCTCCCTGGTGTTCA
131 AAAGCTGAAGGCAGCGAATCTTATCTCCCTGGCATTAA
* * * * * *
169 GACTTGAAATAGCTTAAGTGGAGTGGATTAAAGCTGTGGGCAGCGAATCCTATCTCTTTGGCATT
1 GACTTGAAATAGCTGAAGTGGAGCGGATTAAAGCTATGAGCAGCGAAACCTATCCCTTTGGCATT
* **
234 ATAGTGGAACAGATTAA-AGCT-AAAGGTAGCAAATCTTCTTTCCCTTGTATTGCAGCAGAGCAG
66 ATAGTGGAACAGATTAATAG-TGAAA-GAAGCAAATCTTCTTTCCC-TACATTGCAGCAGAGCAG
*
297 ATTAAAGCTGAAGGCAGCGAATCTTCTCTCCCTGGCATTAA
128 ATTAAAGCTGAAGGCAGCGAATCTTATCTCCCTGGCATTAA
338 GACTTGAAATAGC
1 GACTTGAAATAGC
351 AATCCTATCT
Statistics
Matches: 160, Mismatches: 19, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
167 4 0.03
168 91 0.57
169 65 0.41
ACGTcount: A:0.30, C:0.18, G:0.24, T:0.28
Consensus pattern (168 bp):
GACTTGAAATAGCTGAAGTGGAGCGGATTAAAGCTATGAGCAGCGAAACCTATCCCTTTGGCATT
ATAGTGGAACAGATTAATAGTGAAAGAAGCAAATCTTCTTTCCCTACATTGCAGCAGAGCAGATT
AAAGCTGAAGGCAGCGAATCTTATCTCCCTGGCATTAA
Found at i:466 original size:134 final size:134
Alignment explanation
Indices: 226--484 Score: 518
Period size: 134 Copynumber: 1.9 Consensus size: 134
216 TCCTATCTCT
226 TTGGCATTATAGTGGAACAGATTAAAGCTAAAGGTAGCAAATCTTCTTTCCCTTGTATTGCAGCA
1 TTGGCATTATAGTGGAACAGATTAAAGCTAAAGGTAGCAAATCTTCTTTCCCTTGTATTGCAGCA
291 GAGCAGATTAAAGCTGAAGGCAGCGAATCTTCTCTCCCTGGCATTAAGACTTGAAATAGCAATCC
66 GAGCAGATTAAAGCTGAAGGCAGCGAATCTTCTCTCCCTGGCATTAAGACTTGAAATAGCAATCC
356 TATC
131 TATC
360 TTGGCATTATAGTGGAACAGATTAAAGCTAAAGGTAGCAAATCTTCTTTCCCTTGTATTGCAGCA
1 TTGGCATTATAGTGGAACAGATTAAAGCTAAAGGTAGCAAATCTTCTTTCCCTTGTATTGCAGCA
425 GAGCAGATTAAAGCTGAAGGCAGCGAATCTTCTCTCCCTGGCATTAAGACTTGAAATAGC
66 GAGCAGATTAAAGCTGAAGGCAGCGAATCTTCTCTCCCTGGCATTAAGACTTGAAATAGC
485 TGAAGTGAAG
Statistics
Matches: 125, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
134 125 1.00
ACGTcount: A:0.31, C:0.20, G:0.21, T:0.28
Consensus pattern (134 bp):
TTGGCATTATAGTGGAACAGATTAAAGCTAAAGGTAGCAAATCTTCTTTCCCTTGTATTGCAGCA
GAGCAGATTAAAGCTGAAGGCAGCGAATCTTCTCTCCCTGGCATTAAGACTTGAAATAGCAATCC
TATC
Found at i:643 original size:169 final size:169
Alignment explanation
Indices: 360--4663 Score: 5374
Period size: 169 Copynumber: 25.5 Consensus size: 169
350 CAATCCTATC
* * * * *
360 TTGGCATTATAGTGGAACAGATTAAAGCTAAAGGTAGCAAATCTTCTTTCCCTTGTATTGCAGCA
1 TTGGCATTATAGTGGAACAGATTAAAGCTAAAGGTAGCGAATCTTGTTTCCCTAGCATTGCAGCG
* * *
425 GAGCAGATTAAAGCTGAAGGCAGCGAATCTTCTCTCCCTGGCATTAAGACTTGAAATAGCTGAAG
66 GAGCAGATTAAAGCTGAGGGCAGCGAATCTTATCTCCCTGGCGTTAAGACTTGAAATAGCTGAAG
* * *
490 TGAAGCGGATTAAAGCTGTGGGCAGCGAATCCTATGTAT
131 TGGAGCGGATTAAAGCTGTGGGCAGCGAATCCTATCTCT
** * * *
529 TTGGCATTATAGTGGAACAGATTAAATTTAAAAGTGGCGAATATTGTTTCCCTAGCATTGCAGCG
1 TTGGCATTATAGTGGAACAGATTAAAGCTAAAGGTAGCGAATCTTGTTTCCCTAGCATTGCAGCG
* * * ** * *
594 GAGCAGATTAAAGTTGAAGGCAGCGAATATTATCTCTATGGTC-TTAAGACTTGAAAGAGCTGAG
66 GAGCAGATTAAAGCTGAGGGCAGCGAATCTTATCTCCCTGG-CGTTAAGACTTGAAATAGCTGAA
658 GTGGAGCGGATTAAAGCTGTGGGCAGCGAATCCTATCTCT
130 GTGGAGCGGATTAAAGCTGTGGGCAGCGAATCCTATCTCT
* * * * *
698 TTGGCATTATAGTGGAACAGATTAAAGCAAAAGGTAGAGAATCTTGTTTTCCTAGCGTTGCAACG
1 TTGGCATTATAGTGGAACAGATTAAAGCTAAAGGTAGCGAATCTTGTTTCCCTAGCATTGCAGCG
* * * * *
763 GAGCAGATTAAAGCTGAAGGCAGCGACTCTTATCTCCCTGTCGTTACGACTTGAAGTAGCTGAAG
66 GAGCAGATTAAAGCTGAGGGCAGCGAATCTTATCTCCCTGGCGTTAAGACTTGAAATAGCTGAAG
* * * *
828 TGGAGCGGATTAAAGCTATGAGCAGCGAAACCTATATCT
131 TGGAGCGGATTAAAGCTGTGGGCAGCGAATCCTATCTCT
* * *
867 TTGGCTTTATAGTGGAACAGATTAATGCTAAAGGTAGCGAATCTTGTTTCTCTAGCATTGCAGCG
1 TTGGCATTATAGTGGAACAGATTAAAGCTAAAGGTAGCGAATCTTGTTTCCCTAGCATTGCAGCG
* * * * * *
932 GAGCAGATGAAAGCAGAGGGCAGCAAATCTTGTCTCCCTGGCGTTAAGACTTGAAATAGATTAAG
66 GAGCAGATTAAAGCTGAGGGCAGCGAATCTTATCTCCCTGGCGTTAAGACTTGAAATAGCTGAAG
** *** *
997 TGGAGCGGATTAAAATTGTTACCAGCGATTCCTATCTCT
131 TGGAGCGGATTAAAGCTGTGGGCAGCGAATCCTATCTCT
* * ** * * *
1036 TTGGTATTATAGTGGAATAGATTAAATTTAAAGGTAGCGAATCTT-TATCCCTTAGCGTTACAGC
1 TTGGCATTATAGTGGAACAGATTAAAGCTAAAGGTAGCGAATCTTGTTTCCC-TAGCATTGCAGC
* * * * * * *
1100 GGAGCAGATTAAAGCTGATGGCAACAAATCTTATCTCCATTGCGTTAAGACTTGAAATAACCGAA
65 GGAGCAGATTAAAGCTGAGGGCAGCGAATCTTATCTCCCTGGCGTTAAGACTTGAAATAGCTGAA
* * * * *
1165 GTAGAGTGGATTAAAGCTGTGGGTAGAGAATCCTATTTCT
130 GTGGAGCGGATTAAAGCTGTGGGCAGCGAATCCTATCTCT
** * ** * *
1205 TTGGGTTTATAGTGGAACAAATTAAAGCTAAAGGTAGTAAATCTTCTTTCCCTAGCATTTCAGCG
1 TTGGCATTATAGTGGAACAGATTAAAGCTAAAGGTAGCGAATCTTGTTTCCCTAGCATTGCAGCG
* * * * *
1270 GAGCAGATTAAATCTGTGGGCAGCGAATCTTGTCTCCCTGGCGTTAAGACTTGAAATAGTTAAAG
66 GAGCAGATTAAAGCTGAGGGCAGCGAATCTTATCTCCCTGGCGTTAAGACTTGAAATAGCTGAAG
* * *
1335 TGAAGCGGATTAAAGCTGTGGGCAGCGCATCTTATCTCT
131 TGGAGCGGATTAAAGCTGTGGGCAGCGAATCCTATCTCT
* * * ** * *
1374 TTGGCTTTATAGTGGAATAGATTCAAGCTAAAGGTAGCGAATCTTGTTTCCCTAGTGTTGCATCA
1 TTGGCATTATAGTGGAACAGATTAAAGCTAAAGGTAGCGAATCTTGTTTCCCTAGCATTGCAGCG
* * * * *
1439 GTGCAGATTAAAGCTGAGGGCAGCGAATCTTATCTGCCTAGCGTTAAAACTTGAAGTAGCTGAAG
66 GAGCAGATTAAAGCTGAGGGCAGCGAATCTTATCTCCCTGGCGTTAAGACTTGAAATAGCTGAAG
* * * *
1504 TGGAGCAGATTAAAGATGTGGGCAGTGAATCCGATCTCT
131 TGGAGCGGATTAAAGCTGTGGGCAGCGAATCCTATCTCT
* * ** * ** * * *
1543 TTGGCTTTATAGTGGAACAAATTAAAGCTAAACTTAGCAAATCTTCCTTGCCTAGTATTGCAGCA
1 TTGGCATTATAGTGGAACAGATTAAAGCTAAAGGTAGCGAATCTTGTTTCCCTAGCATTGCAGCG
* * * *
1608 GAGCAGATTAAATCTGAGGGTAGCGAATCTTATCTCCCTAGCGTTAAGACTTGAAGTAGCTGAAG
66 GAGCAGATTAAAGCTGAGGGCAGCGAATCTTATCTCCCTGGCGTTAAGACTTGAAATAGCTGAAG
* *
1673 TGGAGCAGATTAAAGCTGTAGGCAGCGAATCCTATCTCT
131 TGGAGCGGATTAAAGCTGTGGGCAGCGAATCCTATCTCT
* * * * * *
1712 TTGGCTTTACAGTGGAACAGATTAAAGCTAAAGTTAGCAAATCTTTTTTCCCTAGTATTGCAGCG
1 TTGGCATTATAGTGGAACAGATTAAAGCTAAAGGTAGCGAATCTTGTTTCCCTAGCATTGCAGCG
* * * *
1777 GAGCAGATTAAAGCTGAGGGTAGCGAATCTTGTCTCCCTGGCTTTAAGACTTGAAATAGCTAAAG
66 GAGCAGATTAAAGCTGAGGGCAGCGAATCTTATCTCCCTGGCGTTAAGACTTGAAATAGCTGAAG
* *
1842 TGAAGCGGATTAAAGCTGTGGGCAGCAAATCCTATCTCT
131 TGGAGCGGATTAAAGCTGTGGGCAGCGAATCCTATCTCT
* * **
1881 TTGG-ATTGTAGTGGAATAGATTAAATTTAAAGGTAGCGAATCTTGTTTCCCTAGCATTGCAGCG
1 TTGGCATTATAGTGGAACAGATTAAAGCTAAAGGTAGCGAATCTTGTTTCCCTAGCATTGCAGCG
* * * * * *
1945 GAGCAGATTAAAGTTAAAGGCAGCGAATCTTATCTCCATGGTGTTAAGACTTGAAATAGTTGAAG
66 GAGCAGATTAAAGCTGAGGGCAGCGAATCTTATCTCCCTGGCGTTAAGACTTGAAATAGCTGAAG
* * * * ** * *
2010 TGAACCAGATTAAAGCTATGGGCAATGAAACTTATCTCT
131 TGGAGCGGATTAAAGCTGTGGGCAGCGAATCCTATCTCT
* * * * * * *
2049 TTAGCTTTATAGTGTAATATATTAAAGCTAAAGGTAGCGAATCTTGTTTCCCTAGCATTGAAGCT
1 TTGGCATTATAGTGGAACAGATTAAAGCTAAAGGTAGCGAATCTTGTTTCCCTAGCATTGCAGCG
* *
2114 GAGCAGATTAAAGCTGAGGGCAGCAAATCTTATCTCCCTGGCGTTAAGACTTGAAGTAGCTGAAG
66 GAGCAGATTAAAGCTGAGGGCAGCGAATCTTATCTCCCTGGCGTTAAGACTTGAAATAGCTGAAG
* * *
2179 TGGAGCAGATTAAAGCTATGGGCAGCGAATCCTATCTTT
131 TGGAGCGGATTAAAGCTGTGGGCAGCGAATCCTATCTCT
* *
2218 TTGGCATTATAATGG-ACTAGATTAAAGCTAAAGGTAGCGAACCTTGTTTCCCTAGCATTGCAGC
1 TTGGCATTATAGTGGAAC-AGATTAAAGCTAAAGGTAGCGAATCTTGTTTCCCTAGCATTGCAGC
* * * *
2282 GGAGCAGATTAAAG-TAAAGGGCAGCGAATCTTGTCTCCCTGGCATTAAGACTTGAAATAGATGA
65 GGAGCAGATTAAAGCT-GAGGGCAGCGAATCTTATCTCCCTGGCGTTAAGACTTGAAATAGCTGA
* *
2346 AGTGGAGCGGATTAAAGTTGTGGGTAGCGAATCCTATCTCT
129 AGTGGAGCGGATTAAAGCTGTGGGCAGCGAATCCTATCTCT
* * * * * *
2387 TTAGTATTATAGTGGAATAGACTAAAGCTAAAGGTAGGGAATCTT-TTTCCCCTAGCGTTGCAGC
1 TTGGCATTATAGTGGAACAGATTAAAGCTAAAGGTAGCGAATCTTGTTT-CCCTAGCATTGCAGC
* * * * ** * *
2451 AGAGCAGATTAAAGCTTAGGGCAGTGAAACTTATCTCCCAAGCGCTAAGACTTGAAATAACTGAA
65 GGAGCAGATTAAAGCTGAGGGCAGCGAATCTTATCTCCCTGGCGTTAAGACTTGAAATAGCTGAA
* * *
2516 GTGGAGCGGATAAAAGCTGTGGGCAGCGGATCCTATTTCT
130 GTGGAGCGGATTAAAGCTGTGGGCAGCGAATCCTATCTCT
** * * ** *
2556 TTGGGTTTATAGTGGAACAGATTGAAGCTAAACGTAGTAAATCTTCTTTCCCTAGCATTGCAGCG
1 TTGGCATTATAGTGGAACAGATTAAAGCTAAAGGTAGCGAATCTTGTTTCCCTAGCATTGCAGCG
* * * * * *
2621 GAGCAGATTAAATCTGTGGGCGGCAAATCTTGTCTCCCTAGCGTTAAGACTTGAAATAGCTGAAG
66 GAGCAGATTAAAGCTGAGGGCAGCGAATCTTATCTCCCTGGCGTTAAGACTTGAAATAGCTGAAG
* * * *
2686 TGGATCGGATTAAAGCTATGGGTA-CGGAATCCTATCGCT
131 TGGAGCGGATTAAAGCTGTGGGCAGC-GAATCCTATCTCT
* * * * *
2725 TTGGCTTTATAGTGGAACAGATCAATGCTAAAGGTAGCGAATCTTATTTCCCTAGCCTTGCAGCG
1 TTGGCATTATAGTGGAACAGATTAAAGCTAAAGGTAGCGAATCTTGTTTCCCTAGCATTGCAGCG
* * *
2790 GAGTAGATTAAAGCTGAGGGCAGCGAATCTTATCTCCTTAGCGTTAAGACTTGAAATAGCTGAAG
66 GAGCAGATTAAAGCTGAGGGCAGCGAATCTTATCTCCCTGGCGTTAAGACTTGAAATAGCTGAAG
* * * *
2855 TGGATCGGATTAAAGCTATGGGTA-CGGAATCCTATCGCT
131 TGGAGCGGATTAAAGCTGTGGGCAGC-GAATCCTATCTCT
* * * **
2894 TTGGCTTTATAGTGGAACAGATCAATGCTAAAGGTAGCGAATCTTGTTTCCCTTTCATTGCAGCG
1 TTGGCATTATAGTGGAACAGATTAAAGCTAAAGGTAGCGAATCTTGTTTCCCTAGCATTGCAGCG
* *
2959 GAGCAGATTAAAG-TAGAGGGCAGCGAATCTTGTCTCCCTAGCGTTAAGACTTGAAATAGCTGAA
66 GAGCAGATTAAAGCT-GAGGGCAGCGAATCTTATCTCCCTGGCGTTAAGACTTGAAATAGCTGAA
* * *
3023 GTGGAACAGATTAAAGCTCTGGGCAGCGAATCCTATCTCT
130 GTGGAGCGGATTAAAGCTGTGGGCAGCGAATCCTATCTCT
* * * * *
3063 TTGGCATTATAGAGGAACGGATAAAAGCTAAAGGTAGAGAATCTTGTTTCCCTATCATTGCAGCG
1 TTGGCATTATAGTGGAACAGATTAAAGCTAAAGGTAGCGAATCTTGTTTCCCTAGCATTGCAGCG
*
3128 GAGCAGATTAAAGCTGAGGGCAGCGAATCTTATCTCCCTGGCGTTTAGACTTGAAATAGCTGAAG
66 GAGCAGATTAAAGCTGAGGGCAGCGAATCTTATCTCCCTGGCGTTAAGACTTGAAATAGCTGAAG
* *
3193 TGGAGTGGATTAAAGCTGTGGGCAGCGAATCCTACCTCT
131 TGGAGCGGATTAAAGCTGTGGGCAGCGAATCCTATCTCT
* * * * * *
3232 TTGGAAATATAGTGGAACAGATTAAGGCTAAAGGTAGCAAATCTTCTTTCCCTAGTATTGCAGCG
1 TTGGCATTATAGTGGAACAGATTAAAGCTAAAGGTAGCGAATCTTGTTTCCCTAGCATTGCAGCG
* *
3297 GAGCAGATTAAAGCTGAGGGCAGCGAATCTTCTCTCCCTGGCATTAAGACTTGAAATAGCTGAAG
66 GAGCAGATTAAAGCTGAGGGCAGCGAATCTTATCTCCCTGGCGTTAAGACTTGAAATAGCTGAAG
*
3362 TGGAGCGGATTAAAGCTGTGGGCAGCAAATCCTATCTCT
131 TGGAGCGGATTAAAGCTGTGGGCAGCGAATCCTATCTCT
** * * *
3401 TTGGCATTATAGTGGAACAGATTAAATTTAAAGGTGGCGAATCTTGTTTCCCTAGCATTACAGCA
1 TTGGCATTATAGTGGAACAGATTAAAGCTAAAGGTAGCGAATCTTGTTTCCCTAGCATTGCAGCG
* * * *
3466 GAGCAGATTAAAGCTGAAGGCAGCGAATCTTCTGTCCCTAGCGTTAAGACTTGAAATAGCTGAAG
66 GAGCAGATTAAAGCTGAGGGCAGCGAATCTTATCTCCCTGGCGTTAAGACTTGAAATAGCTGAAG
*
3531 TGGAGCGGATTAAAGCTGTGGGCAGCAAATCCTATCTCT
131 TGGAGCGGATTAAAGCTGTGGGCAGCGAATCCTATCTCT
** * *
3570 TTGGCATTATAGTGGAACAGATTAAATTTAAAGGTGGCGAATCTTGTTTCCCTAGCATTACAGCG
1 TTGGCATTATAGTGGAACAGATTAAAGCTAAAGGTAGCGAATCTTGTTTCCCTAGCATTGCAGCG
* * * * * *
3635 GAGCAGATTAAAGTTGAAGGCAGCGAAACTTCTCTCTCTAGCGTTAAGACTTGAAATAGCTGAAG
66 GAGCAGATTAAAGCTGAGGGCAGCGAATCTTATCTCCCTGGCGTTAAGACTTGAAATAGCTGAAG
* *
3700 TGAAGCGGATTAAAGCTGTGGGTAGCGAATCCTATCTCT
131 TGGAGCGGATTAAAGCTGTGGGCAGCGAATCCTATCTCT
* ** *
3739 TTGTCATTATAGTGGAACA-ATTTAAATTTAAAGGTGGCGAATCTTGTTTCCCTAGCATTGCAGC
1 TTGGCATTATAGTGGAACAGA-TTAAAGCTAAAGGTAGCGAATCTTGTTTCCCTAGCATTGCAGC
* * * * *
3803 GGAGCAGATTAAAGCTGAAGGCAGCGAATTTTATGTCCATGGTGTTAAGACTTGAAATAGCTGAA
65 GGAGCAGATTAAAGCTGAGGGCAGCGAATCTTATCTCCCTGGCGTTAAGACTTGAAATAGCTGAA
* * *
3868 GTGGAGCGGATTAAAGCCGTGGGCAGCAAATTCTATCTCT
130 GTGGAGCGGATTAAAGCTGTGGGCAGCGAATCCTATCTCT
* * * * * *
3908 TTGGCATTATAGTGGAATAGATTAAAGCAAAAGGTAGTGAATCTTGTTTTCCTAGCATTGCAACA
1 TTGGCATTATAGTGGAACAGATTAAAGCTAAAGGTAGCGAATCTTGTTTCCCTAGCATTGCAGCG
* *
3973 GAGCAGATTAAAGCTGAGGGCAGCGAATCTTCTCTCACTGGCGTTAAGACTTGAAATAGCTGAAG
66 GAGCAGATTAAAGCTGAGGGCAGCGAATCTTATCTCCCTGGCGTTAAGACTTGAAATAGCTGAAG
* * * *
4038 TGGAGCGGATTAAAGCTATGGGTAGGGAATCCTATCGCT
131 TGGAGCGGATTAAAGCTGTGGGCAGCGAATCCTATCTCT
* * * * *
4077 TTGGCTTTATAGTGGAACAGATCAATGCTAAAGGTAGCGAATCTTGTTTCCCTATCATTGTAGCG
1 TTGGCATTATAGTGGAACAGATTAAAGCTAAAGGTAGCGAATCTTGTTTCCCTAGCATTGCAGCG
* * * * *
4142 GAGCAGATTAACG-TAGAGGGTAGCGAATCTTGTCTCCCTAGTGTTAAGACTTGAAATAGCTGAA
66 GAGCAGATTAAAGCT-GAGGGCAGCGAATCTTATCTCCCTGGCGTTAAGACTTGAAATAGCTGAA
* * * * *
4206 CTGGAGTGGATGAAAGCTGTGGGCAGCGATTCCTATCTTT
130 GTGGAGCGGATTAAAGCTGTGGGCAGCGAATCCTATCTCT
* * * * * *
4246 TTGGCATTATAGAGGAACAGATAAAAGCTAATGGTAGAGAATCTTGTTTCCCTATCATTGCAGCA
1 TTGGCATTATAGTGGAACAGATTAAAGCTAAAGGTAGCGAATCTTGTTTCCCTAGCATTGCAGCG
* * * * * *
4311 GAGCAGATTAAAGGTGACGGCAGCGAGTCTTATCTCCCTGGTGTTTAGACTTTAAATAGCTGAAG
66 GAGCAGATTAAAGCTGAGGGCAGCGAATCTTATCTCCCTGGCGTTAAGACTTGAAATAGCTGAAG
*
4376 TGGA-CTAGATTAAAGCTGTGGGCAGCGAATCCTATCTCT
131 TGGAGC-GGATTAAAGCTGTGGGCAGCGAATCCTATCTCT
* * * * *
4415 TTGGAATTATAGTGGAACAGATTAAAGCTAAAGGTAGCAAATCTTCTTTCCCTAGTATTACAGCG
1 TTGGCATTATAGTGGAACAGATTAAAGCTAAAGGTAGCGAATCTTGTTTCCCTAGCATTGCAGCG
* * * **
4480 GAGCAGATTAAAGCTGAGGGCAGTGAAACTTCTCTCCCTGGCGTTAAGACTTGAAATAAATGAAG
66 GAGCAGATTAAAGCTGAGGGCAGCGAATCTTATCTCCCTGGCGTTAAGACTTGAAATAGCTGAAG
* * * *
4545 TGAAGCAGATTAAAGCTGTAGACAGCGAATCCTATCTCT
131 TGGAGCGGATTAAAGCTGTGGGCAGCGAATCCTATCTCT
* * ** * * * * *
4584 TTTGCATTATAGTAGAACAGATTAAATTTAAAGGTGGCAAATCTTGTTTTCCTAGCGTTGCAACG
1 TTGGCATTATAGTGGAACAGATTAAAGCTAAAGGTAGCGAATCTTGTTTCCCTAGCATTGCAGCG
*
4649 AAGCAGATTAAAGCT
66 GAGCAGATTAAAGCT
Statistics
Matches: 3580, Mismatches: 534, Indels: 42
0.86 0.13 0.01
Matches are distributed among these distances:
168 153 0.04
169 3411 0.95
170 16 0.00
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.28
Consensus pattern (169 bp):
TTGGCATTATAGTGGAACAGATTAAAGCTAAAGGTAGCGAATCTTGTTTCCCTAGCATTGCAGCG
GAGCAGATTAAAGCTGAGGGCAGCGAATCTTATCTCCCTGGCGTTAAGACTTGAAATAGCTGAAG
TGGAGCGGATTAAAGCTGTGGGCAGCGAATCCTATCTCT
Done.