Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: scaffold649
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 52728
ACGTcount: A:0.08, C:0.05, G:0.06, T:0.07
Warning! 38653 characters in sequence are not A, C, G, or T
Found at i:361 original size:88 final size:88
Alignment explanation
Indices: 264--460 Score: 297
Period size: 88 Copynumber: 2.2 Consensus size: 88
254 GCTGATTCTG
* *
264 TCACCCTAAGCAGTAGTGGAGCAGATCCAAGAAT-GTGAATCTAATCTTGCAAATACAGTGGAGA
1 TCACCCTAAGCAGTAGTGGAGCAGATCCAAG-ATGGTGAATCTAATCTTCCAAATACAGTAGAGA
*
328 AGTAGATTTAAGCCATTAATCCTA
65 AGCAGATTTAAGCCATTAATCCTA
* * *
352 TCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTAGAGAA
1 TCACCCTAAGCAGTAGTGGAGCAGATCCAAGATGGTGAATCTAATCTTCCAAATACAGTAGAGAA
*
417 GCAGATTTAAGCCATTAGTCCTA
66 GCAGATTTAAGCCATTAATCCTA
* *
440 TCACCCTAAGCGGTAGGGGAG
1 TCACCCTAAGCAGTAGTGGAG
461 TAGGGTGAAG
Statistics
Matches: 99, Mismatches: 9, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
87 2 0.02
88 97 0.98
ACGTcount: A:0.34, C:0.20, G:0.23, T:0.24
Consensus pattern (88 bp):
TCACCCTAAGCAGTAGTGGAGCAGATCCAAGATGGTGAATCTAATCTTCCAAATACAGTAGAGAA
GCAGATTTAAGCCATTAATCCTA
Found at i:384 original size:132 final size:132
Alignment explanation
Indices: 1--372 Score: 511
Period size: 132 Copynumber: 2.8 Consensus size: 132
* * * * *
1 CACCCTAAGCAATAGTGGAGTAGATCGAAG-ATGGTGAATCTGATCTTCCCAATACAGTAGAGAA
1 CACCCTAAGCAGTAGTGGAGCAGATCCAAGAAT-GTGAATCTAATCTTCCCAATACAGTGGAGAA
*
65 GTAGATTTAAGCCATTACA-CCTATCTCCC-AAGGCAGTAGTGGAGTAGGTTGAAGATTACAGAT
65 GTAGATTTAAGCCATTA-ATCCTATCACCCTAA-GCAGTAGTGGAGTAGGTTGAAGATTACAGAT
128 TCTGT
128 TCTGT
* * *
133 CACCCTAAACAGTAGTGGAGCATAT-CAA-ATATGATGAATCTTATCTTCCCAATACAGTGGAGA
1 CACCCTAAGCAGTAGTGGAGCAGATCCAAGA-ATG-TGAATCTAATCTTCCCAATACAGTGGAGA
* * * * * *
196 AGCAGATGTAATCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCTGATT
64 AGTAGATTTAAGCCATTAATCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTACAGATT
261 CTGT
129 CTGT
* *
265 CACCCTAAGCAGTAGTGGAGCAGATCCAAGAATGTGAATCTAATCTTGCAAATACAGTGGAGAAG
1 CACCCTAAGCAGTAGTGGAGCAGATCCAAGAATGTGAATCTAATCTTCCCAATACAGTGGAGAAG
330 TAGATTTAAGCCATTAATCCTATCACCCTAAGCAGTAGTGGAG
66 TAGATTTAAGCCATTAATCCTATCACCCTAAGCAGTAGTGGAG
373 CAGATCGAAG
Statistics
Matches: 210, Mismatches: 23, Indels: 14
0.85 0.09 0.06
Matches are distributed among these distances:
131 3 0.01
132 198 0.94
133 8 0.04
134 1 0.00
ACGTcount: A:0.33, C:0.19, G:0.22, T:0.26
Consensus pattern (132 bp):
CACCCTAAGCAGTAGTGGAGCAGATCCAAGAATGTGAATCTAATCTTCCCAATACAGTGGAGAAG
TAGATTTAAGCCATTAATCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTACAGATTCT
GT
Found at i:400 original size:220 final size:220
Alignment explanation
Indices: 132--592 Score: 701
Period size: 220 Copynumber: 2.1 Consensus size: 220
122 ACAGATTCTG
* * * *
132 TCACCCTAAACAGTAGTGGAGCATATCAAATATGATGAATCTTATCTTCCCAATACAGTGGAGAA
1 TCACCCTAAGCAGTAGTGGAGCAGATCAAAGATGATGAATCTTATCTTCCCAATACAGTAGAGAA
* * *
197 GCAGATGTAATCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCT-GATT
66 GCAGATGTAAGCCATTAGTCCTATCACCCTAAGCAGTAGGGGAGTAGGGTGAAGATTG-TAGATT
* * *
261 CTGTCACCCTAAGCAGTAGTGGAGCAGATCCAAGAAT-GTGAATCTAATCTTGCAAATACAGTGG
130 CCGTCACCCTAAGCAGTAGTGGAGCAGATCCAAG-ATGGTGAATCTAATCTTCCAAATACAGTAG
*
325 AGAAGTAGATTTAAGCCATTAATCCTA
194 AGAAGCAGATTTAAGCCATTAATCCTA
* *
352 TCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTAGAGAA
1 TCACCCTAAGCAGTAGTGGAGCAGATCAAAGATGATGAATCTTATCTTCCCAATACAGTAGAGAA
* *
417 GCAGATTTAAGCCATTAGTCCTATCACCCTAAGCGGTAGGGGAGTAGGGTGAAGATTGTAGATTC
66 GCAGATGTAAGCCATTAGTCCTATCACCCTAAGCAGTAGGGGAGTAGGGTGAAGATTGTAGATTC
* * *
482 CGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTAGAG
131 CGTCACCCTAAGCAGTAGTGGAGCAGATCCAAGATGGTGAATCTAATCTTCCAAATACAGTAGAG
*
547 AAGCAGATTTAAGCCATTAGTCCTA
196 AAGCAGATTTAAGCCATTAATCCTA
* *
572 TCACCCTAAGCGGTAGGGGAG
1 TCACCCTAAGCAGTAGTGGAG
593 TAGGGTGAAG
Statistics
Matches: 218, Mismatches: 21, Indels: 4
0.90 0.09 0.02
Matches are distributed among these distances:
219 3 0.01
220 215 0.99
ACGTcount: A:0.32, C:0.19, G:0.23, T:0.25
Consensus pattern (220 bp):
TCACCCTAAGCAGTAGTGGAGCAGATCAAAGATGATGAATCTTATCTTCCCAATACAGTAGAGAA
GCAGATGTAAGCCATTAGTCCTATCACCCTAAGCAGTAGGGGAGTAGGGTGAAGATTGTAGATTC
CGTCACCCTAAGCAGTAGTGGAGCAGATCCAAGATGGTGAATCTAATCTTCCAAATACAGTAGAG
AAGCAGATTTAAGCCATTAATCCTA
Found at i:488 original size:132 final size:132
Alignment explanation
Indices: 352--2068 Score: 2391
Period size: 132 Copynumber: 13.0 Consensus size: 132
342 ATTAATCCTA
* *
352 TCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTAGAGAA
1 TCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGATGAATCTTATCTTCCCAATACAGTGGAGAA
* * * * *
417 GCAGATTTAAGCCATTAGTCCTATCACCCTAAGCGGTAGGGGAGTAGGGTGAAGATTGTAGATTC
66 GCAGATTTAAGCCATTAGTCCTATCTCCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTC
*
482 CG
131 TG
* *
484 TCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTAGAGAA
1 TCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGATGAATCTTATCTTCCCAATACAGTGGAGAA
* * * * *
549 GCAGATTTAAGCCATTAGTCCTATCACCCTAAGCGGTAGGGGAGTAGGGTGAAGATTGTAGATTC
66 GCAGATTTAAGCCATTAGTCCTATCTCCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTC
*
614 CG
131 TG
* *
616 TCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTAGAGAA
1 TCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGATGAATCTTATCTTCCCAATACAGTGGAGAA
* * *
681 GCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGGTGAAGATTGTAGATTC
66 GCAGATTTAAGCCATTAGTCCTATCTCCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTC
*
746 CG
131 TG
*
748 TCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGAT-AATTCTTATTTTCCCAATACAGTGGAGA
1 TCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGATGAA-TCTTATCTTCCCAATACAGTGGAGA
* * *
812 AGAAGATTTAAGCCATTAGTCCTATCTCCCTAAGCAGTAATGGAGTAGGTTGAAGATTGCCGATT
65 AGCAGATTTAAGCCATTAGTCCTATCTCCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATT
877 CTG
130 CTG
* * * * *
880 TCACCCTAAGCA-TTGTGGAGCAGATCGAATATTATAAATCTTATCTTCCCAATAAAGTGGAGAA
1 TCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGATGAATCTTATCTTCCCAATACAGTGGAGAA
* * * * *
944 GAAGATTTAAGCCATTAGTCCTATCTCCCTAAGCAATAGTCGAATAGGTTGAAGATTGCAGATAC
66 GCAGATTTAAGCCATTAGTCCTATCTCCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTC
1009 TG
131 TG
* * * *
1011 TCACCCTAAGCATTAGTGGAGTAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTAGAGAA
1 TCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGATGAATCTTATCTTCCCAATACAGTGGAGAA
* * * * * * * *
1076 GTAGATTTAAGCCATAAGACCAATCTCCCAAAGCAGTAGTCGAGTAGGTAGAAGATTACAGATTC
66 GCAGATTTAAGCCATTAGTCCTATCTCCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTC
1141 TG
131 TG
* * *
1143 TCACCCTAAACAGTAGTGGAGCAGATCAAATATGATGAATCTTATCTTCCCAATACAGTGGAGAA
1 TCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGATGAATCTTATCTTCCCAATACAGTGGAGAA
* * * *
1208 GCAGATTTCAGTCATTAGTCCTATGAT-CCTAAGCAGTAGTGGAGTAGGTTGAAGAATGCAGATT
66 GCAGATTTAAGCCATTAGTCCTAT-CTCCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATT
*
1272 TTG
130 CTG
* * * * * * **
1275 TCACCCTAAGCAGTTGTGCAGCAGATCGAAGATGGTGAATCATATCTTCTCAAGATTGTGGAGAA
1 TCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGATGAATCTTATCTTCCCAATACAGTGGAGAA
* * *** * *
1340 GCAGATGTAAGTCATTAGTTGAATCTCCCTAAGCAGTAGTGGAGTAGGTTAAAGTTTGCAGATTC
66 GCAGATTTAAGCCATTAGTCCTATCTCCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTC
1405 TG
131 TG
* * * *
1407 TCACCCTAAACAGTAGTGGAGCAGATCAAATATGATGAATCTTATCTTCCCAATACAGTAGAGAA
1 TCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGATGAATCTTATCTTCCCAATACAGTGGAGAA
* * *
1472 GCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGGTGAAGATTGTAGATTC
66 GCAGATTTAAGCCATTAGTCCTATCTCCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTC
*
1537 CG
131 TG
*
1539 TCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGAT-AATTCTTATTTTCCCAATACAGTGGAGA
1 TCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGATGAA-TCTTATCTTCCCAATACAGTGGAGA
* * *
1603 AGAAGATTTAAGCCATTAGTCCTATCTCCCTAAGCAGTAATGGAGTAGGTTGAAGATTGCCGATT
65 AGCAGATTTAAGCCATTAGTCCTATCTCCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATT
1668 CTG
130 CTG
* * * * *
1671 TCACCCTAAGCA-TTGTGGAGCAGATCGAATATTATAAATCTTATCTTCCCAATAAAGTGGAGAA
1 TCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGATGAATCTTATCTTCCCAATACAGTGGAGAA
* * * *
1735 GAAGATTTAAGCCATTAGTCCTATCTCCCTAAGCAGTAGTCGAATAGGTTGAAGATTGCAGATTT
66 GCAGATTTAAGCCATTAGTCCTATCTCCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTC
1800 TG
131 TG
* * *
1802 TCACCCTAAGCAGTAGTGGAGTAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTAGAGAA
1 TCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGATGAATCTTATCTTCCCAATACAGTGGAGAA
* * * * * *
1867 GTAGATTTAAGCCATAAGACCTATCTCCCAAAGCAGTAGTGGAGTAGGTAGAAGATTACAGATTC
66 GCAGATTTAAGCCATTAGTCCTATCTCCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTC
1932 TG
131 TG
* * * * * *
1934 CCACCCTAAACAGTAGTGGAGCAGATCAAATATGATGAATCTTATCTTACAAATACAGTGGAGAA
1 TCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGATGAATCTTATCTTCCCAATACAGTGGAGAA
* *
1999 GCAAATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTC
66 GCAGATTTAAGCCATTAGTCCTATCTCCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTC
2064 TG
131 TG
2066 TCA
1 TCA
2069 NNNNNNNNNN
Statistics
Matches: 1415, Mismatches: 162, Indels: 16
0.89 0.10 0.01
Matches are distributed among these distances:
131 240 0.17
132 1174 0.83
133 1 0.00
ACGTcount: A:0.32, C:0.18, G:0.23, T:0.27
Consensus pattern (132 bp):
TCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGATGAATCTTATCTTCCCAATACAGTGGAGAA
GCAGATTTAAGCCATTAGTCCTATCTCCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTC
TG
Found at i:515 original size:44 final size:43
Alignment explanation
Indices: 439--780 Score: 159
Period size: 44 Copynumber: 7.8 Consensus size: 43
429 CATTAGTCCT
* * * *
439 ATCACCCTAAGCGGTAGGGGAGTAGGGTGAAGATTGTAGATTCC
1 ATCACCCTAAGCAGTAGTGGAGCA-GATGAAGATTGTAGATTCC
* * * *
483 GTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGT-GAATCTT
1 ATCACCCTAAGCAGTAGTGGAGCAGAT-GAAGATTGTAGATTC-C
* * * * *
527 ATCTTCCC-AATACAGTAGAGAAGCAGATTTAAGCCA-T-TAG--TCC
1 ATC-ACCCTAA-GCAGTAGTGGAGCAGA-TGAAG--ATTGTAGATTCC
* * * *
570 TATCACCCTAAGCGGTAGGGGAGTAGGGTGAAGATTGTAGATTCC
1 -ATCACCCTAAGCAGTAGTGGAGCA-GATGAAGATTGTAGATTCC
* * * *
615 GTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGT-GAATCTT
1 ATCACCCTAAGCAGTAGTGGAGCAGAT-GAAGATTGTAGATTC-C
* * * * *
659 ATCTTCCC-AATACAGTAGAGAAGCAGATTTAAGCCA-T-TAG--TCC
1 ATC-ACCCTAA-GCAGTAGTGGAGCAGA-TGAAG--ATTGTAGATTCC
* *
702 TATCACCCTAAGCAGTAGTGGAGTAGGGTGAAGATTGTAGATTCC
1 -ATCACCCTAAGCAGTAGTGGAGCA-GATGAAGATTGTAGATTCC
*
747 GTCACCCTAAGCAGTAGTGGAGCAGATCGAAGAT
1 ATCACCCTAAGCAGTAGTGGAGCAGAT-GAAGAT
781 GATAATTCTT
Statistics
Matches: 217, Mismatches: 50, Indels: 62
0.66 0.15 0.19
Matches are distributed among these distances:
41 2 0.01
42 2 0.01
43 53 0.24
44 108 0.50
45 46 0.21
46 4 0.02
47 2 0.01
ACGTcount: A:0.30, C:0.19, G:0.27, T:0.24
Consensus pattern (43 bp):
ATCACCCTAAGCAGTAGTGGAGCAGATGAAGATTGTAGATTCC
Found at i:656 original size:352 final size:352
Alignment explanation
Indices: 1--724 Score: 1112
Period size: 352 Copynumber: 2.1 Consensus size: 352
* *
1 CACCCTAAGCAATAGTGGAGTAGATCGAAGATGGTGAATCTGATCTTCCCAATACAGTAGAGAAG
1 CACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTGATCTTCCCAATACAGTAGAGAAG
* * * * *
66 TAGATTTAAGCCATTACACCTATCTCCCAAGGCAGTAGTGGAGTAGGTTGAAGATTACAGATTCT
66 CAGATTTAAGCCATTACACCTATCACCCAAGGCAGTAGGGGAGTAGGGTGAAGATTACAGATTCC
* * *
131 GTCACCCTAAACAGTAGTGGAGCATATCAAATATGATGAATCTTATCTTCCCAATACAGTGGAGA
131 GTCACCCTAAACAGTAGTGGAGCAGATCAAAGATGATGAATCTTATCTTCCCAATACAGTAGAGA
* * *
196 AGCAGATGTAATCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCTGATT
196 AGCAGATGTAAGCCATTAGTCCTATCACCCTAAGCAGTAGGGGAGTAGGGTGAAGATTGCTGATT
* * *
261 CTGTCACCCTAAGCAGTAGTGGAGCAGATCCAAGAATGTGAATCTAATCTTGCAAATACAGTGGA
261 CCGTCACCCTAAGCAGTAGTGGAGCAGATCCAAGAATGTGAATCTAATCTTCCAAATACAGTAGA
*
326 GAAGTAGATTTAAGCCATTAATCCTAT
326 GAAGCAGATTTAAGCCATTAATCCTAT
*
353 CACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTAGAGAAG
1 CACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTGATCTTCCCAATACAGTAGAGAAG
** * **
418 CAGATTTAAGCCATTAGTCCTATCACCCTAA-GCGGTAGGGGAGTAGGGTGAAGATTGTAGATTC
66 CAGATTTAAGCCATTACACCTATCACCC-AAGGCAGTAGGGGAGTAGGGTGAAGATTACAGATTC
* * *
482 CGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTAGAG
130 CGTCACCCTAAACAGTAGTGGAGCAGATCAAAGATGATGAATCTTATCTTCCCAATACAGTAGAG
* *
547 AAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCGGTAGGGGAGTAGGGTGAAGATTG-TAGA
195 AAGCAGATGTAAGCCATTAGTCCTATCACCCTAAGCAGTAGGGGAGTAGGGTGAAGATTGCT-GA
* * *
611 TTCCGTCACCCTAAGCAGTAGTGGAGCAGATCGAAG-ATGGTGAATCTTATCTTCCCAATACAGT
259 TTCCGTCACCCTAAGCAGTAGTGGAGCAGATCCAAGAAT-GTGAATCTAATCTTCCAAATACAGT
*
675 AGAGAAGCAGATTTAAGCCATTAGTCCTAT
323 AGAGAAGCAGATTTAAGCCATTAATCCTAT
705 CACCCTAAGCAGTAGTGGAG
1 CACCCTAAGCAGTAGTGGAG
725 TAGGGTGAAG
Statistics
Matches: 337, Mismatches: 32, Indels: 6
0.90 0.09 0.02
Matches are distributed among these distances:
351 3 0.01
352 332 0.99
353 2 0.01
ACGTcount: A:0.32, C:0.19, G:0.24, T:0.25
Consensus pattern (352 bp):
CACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTGATCTTCCCAATACAGTAGAGAAG
CAGATTTAAGCCATTACACCTATCACCCAAGGCAGTAGGGGAGTAGGGTGAAGATTACAGATTCC
GTCACCCTAAACAGTAGTGGAGCAGATCAAAGATGATGAATCTTATCTTCCCAATACAGTAGAGA
AGCAGATGTAAGCCATTAGTCCTATCACCCTAAGCAGTAGGGGAGTAGGGTGAAGATTGCTGATT
CCGTCACCCTAAGCAGTAGTGGAGCAGATCCAAGAATGTGAATCTAATCTTCCAAATACAGTAGA
GAAGCAGATTTAAGCCATTAATCCTAT
Found at i:1741 original size:791 final size:791
Alignment explanation
Indices: 352--2068 Score: 2975
Period size: 791 Copynumber: 2.2 Consensus size: 791
342 ATTAATCCTA
* * * * *
352 TCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTAGAGAA
1 TCACCCTAAACAGTAGTGGAGCAGATCAAATATGATGAATCTTATCTTCCCAATACAGTGGAGAA
* * * *
417 GCAGATTTAAGCCATTAGTCCTATCACCCTAAGCGGTAGGGGAGTAGGGTGAAGATTGTAGATTC
66 GCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTC
* * * *
482 CGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTAGAG
131 TGTCACCCTAAGCAGTAGTGCAGCAGATCGAAGATGGTGAATCATATCTTCCCAAGACAGTAGAG
* * * * *
547 AAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCGGTAGGGGAGTAGGGTGAAGATTGTAGAT
196 AAGCAGATGTAAGCCATTAGTCCAATCACCCTAAGCAGTAGGGGAGTAGGGTAAAGATTGCAGAT
* * *
612 TCCGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTAG
261 TCCGTCACCCTAAACAGTAGTGGAGCAGATCAAAGATGATGAATCTTATCTTCCCAATACAGTAG
677 AGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGGTGAAGATTGTAG
326 AGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGGTGAAGATTGTAG
742 ATTCCGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGATAATTCTTATTTTCCCAATACAGT
391 ATTCCGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGATAATTCTTATTTTCCCAATACAGT
807 GGAGAAGAAGATTTAAGCCATTAGTCCTATCTCCCTAAGCAGTAATGGAGTAGGTTGAAGATTGC
456 GGAGAAGAAGATTTAAGCCATTAGTCCTATCTCCCTAAGCAGTAATGGAGTAGGTTGAAGATTGC
872 CGATTCTGTCACCCTAAGCATTGTGGAGCAGATCGAATATTATAAATCTTATCTTCCCAATAAAG
521 CGATTCTGTCACCCTAAGCATTGTGGAGCAGATCGAATATTATAAATCTTATCTTCCCAATAAAG
937 TGGAGAAGAAGATTTAAGCCATTAGTCCTATCTCCCTAAGCAATAGTCGAATAGGTTGAAGATTG
586 TGGAGAAGAAGATTTAAGCCATTAGTCCTATCTCCCTAAGCAATAGTCGAATAGGTTGAAGATTG
*
1002 CAGATACTGTCACCCTAAGCATTAGTGGAGTAGATCGAAGATGGTGAATCTTATCTTCCCAATAC
651 CAGATACTGTCACCCTAAGCAGTAGTGGAGTAGATCGAAGATGGTGAATCTTATCTTCCCAATAC
1067 AGTAGAGAAGTAGATTTAAGCCATAAGACCAATCTCCCAAAGCAGTAGTCGAGTAGGTAGAAGAT
716 AGTAGAGAAGTAGATTTAAGCCATAAGACCAATCTCCCAAAGCAGTAGTCGAGTAGGTAGAAGAT
1132 TACAGATTCTG
781 TACAGATTCTG
1143 TCACCCTAAACAGTAGTGGAGCAGATCAAATATGATGAATCTTATCTTCCCAATACAGTGGAGAA
1 TCACCCTAAACAGTAGTGGAGCAGATCAAATATGATGAATCTTATCTTCCCAATACAGTGGAGAA
* * * * * *
1208 GCAGATTTCAGTCATTAGTCCTATGATCCTAAGCAGTAGTGGAGTAGGTTGAAGAATGCAGATTT
66 GCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTC
* * ** *
1273 TGTCACCCTAAGCAGTTGTGCAGCAGATCGAAGATGGTGAATCATATCTTCTCAAGATTGTGGAG
131 TGTCACCCTAAGCAGTAGTGCAGCAGATCGAAGATGGTGAATCATATCTTCCCAAGACAGTAGAG
* ** * * * *
1338 AAGCAGATGTAAGTCATTAGTTGAATCTCCCTAAGCAGTAGTGGAGTAGGTTAAAGTTTGCAGAT
196 AAGCAGATGTAAGCCATTAGTCCAATCACCCTAAGCAGTAGGGGAGTAGGGTAAAGATTGCAGAT
* *
1403 TCTGTCACCCTAAACAGTAGTGGAGCAGATCAAATATGATGAATCTTATCTTCCCAATACAGTAG
261 TCCGTCACCCTAAACAGTAGTGGAGCAGATCAAAGATGATGAATCTTATCTTCCCAATACAGTAG
1468 AGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGGTGAAGATTGTAG
326 AGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGGTGAAGATTGTAG
1533 ATTCCGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGATAATTCTTATTTTCCCAATACAGT
391 ATTCCGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGATAATTCTTATTTTCCCAATACAGT
1598 GGAGAAGAAGATTTAAGCCATTAGTCCTATCTCCCTAAGCAGTAATGGAGTAGGTTGAAGATTGC
456 GGAGAAGAAGATTTAAGCCATTAGTCCTATCTCCCTAAGCAGTAATGGAGTAGGTTGAAGATTGC
1663 CGATTCTGTCACCCTAAGCATTGTGGAGCAGATCGAATATTATAAATCTTATCTTCCCAATAAAG
521 CGATTCTGTCACCCTAAGCATTGTGGAGCAGATCGAATATTATAAATCTTATCTTCCCAATAAAG
*
1728 TGGAGAAGAAGATTTAAGCCATTAGTCCTATCTCCCTAAGCAGTAGTCGAATAGGTTGAAGATTG
586 TGGAGAAGAAGATTTAAGCCATTAGTCCTATCTCCCTAAGCAATAGTCGAATAGGTTGAAGATTG
**
1793 CAGATTTTGTCACCCTAAGCAGTAGTGGAGTAGATCGAAGATGGTGAATCTTATCTTCCCAATAC
651 CAGATACTGTCACCCTAAGCAGTAGTGGAGTAGATCGAAGATGGTGAATCTTATCTTCCCAATAC
* *
1858 AGTAGAGAAGTAGATTTAAGCCATAAGACCTATCTCCCAAAGCAGTAGTGGAGTAGGTAGAAGAT
716 AGTAGAGAAGTAGATTTAAGCCATAAGACCAATCTCCCAAAGCAGTAGTCGAGTAGGTAGAAGAT
1923 TACAGATTCTG
781 TACAGATTCTG
* * *
1934 CCACCCTAAACAGTAGTGGAGCAGATCAAATATGATGAATCTTATCTTACAAATACAGTGGAGAA
1 TCACCCTAAACAGTAGTGGAGCAGATCAAATATGATGAATCTTATCTTCCCAATACAGTGGAGAA
*
1999 GCAAATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTC
66 GCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTC
2064 TGTCA
131 TGTCA
2069 NNNNNNNNNN
Statistics
Matches: 869, Mismatches: 57, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
791 869 1.00
ACGTcount: A:0.32, C:0.18, G:0.23, T:0.27
Consensus pattern (791 bp):
TCACCCTAAACAGTAGTGGAGCAGATCAAATATGATGAATCTTATCTTCCCAATACAGTGGAGAA
GCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTC
TGTCACCCTAAGCAGTAGTGCAGCAGATCGAAGATGGTGAATCATATCTTCCCAAGACAGTAGAG
AAGCAGATGTAAGCCATTAGTCCAATCACCCTAAGCAGTAGGGGAGTAGGGTAAAGATTGCAGAT
TCCGTCACCCTAAACAGTAGTGGAGCAGATCAAAGATGATGAATCTTATCTTCCCAATACAGTAG
AGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGGTGAAGATTGTAG
ATTCCGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGATAATTCTTATTTTCCCAATACAGT
GGAGAAGAAGATTTAAGCCATTAGTCCTATCTCCCTAAGCAGTAATGGAGTAGGTTGAAGATTGC
CGATTCTGTCACCCTAAGCATTGTGGAGCAGATCGAATATTATAAATCTTATCTTCCCAATAAAG
TGGAGAAGAAGATTTAAGCCATTAGTCCTATCTCCCTAAGCAATAGTCGAATAGGTTGAAGATTG
CAGATACTGTCACCCTAAGCAGTAGTGGAGTAGATCGAAGATGGTGAATCTTATCTTCCCAATAC
AGTAGAGAAGTAGATTTAAGCCATAAGACCAATCTCCCAAAGCAGTAGTCGAGTAGGTAGAAGAT
TACAGATTCTG
Found at i:3105 original size:132 final size:132
Alignment explanation
Indices: 2868--3159 Score: 460
Period size: 132 Copynumber: 2.2 Consensus size: 132
2858 NNNNNNNNNN
*
2868 GATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAATATAATAAATCTTATCTTCCCAATGCAG
1 GATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAATATAATAAATCTTATCTTCCCAATACAG
* *
2933 TGGAGAAGAAGATTTAAGCCATTAGTCCTATCTCCTTAAGCAGTAGTCAAATAGGTTGAAGATTG
66 TGGAGAAGAAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTCAAATAGGTTGAAGATTG
2998 CA
131 CA
* * * *
3000 GATTCTGTCACCCTAAACAGTAGTGGAGCAGAT-GAAATATGATGAATCTTATCTTCCCAGTACA
1 GATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCG-AATATAATAAATCTTATCTTCCCAATACA
* ** *
3064 GTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATT
65 GTGGAGAAGAAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTCAAATAGGTTGAAGATT
*
3129 GCG
130 GCA
3132 GATTCTGTCACCCTAAGCAGTAGTGGAG
1 GATTCTGTCACCCTAAGCAGTAGTGGAG
3160 TAGGTTGAAG
Statistics
Matches: 146, Mismatches: 13, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
131 1 0.01
132 145 0.99
ACGTcount: A:0.32, C:0.18, G:0.23, T:0.27
Consensus pattern (132 bp):
GATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAATATAATAAATCTTATCTTCCCAATACAG
TGGAGAAGAAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTCAAATAGGTTGAAGATTG
CA
Found at i:3111 original size:88 final size:87
Alignment explanation
Indices: 3007--3291 Score: 278
Period size: 88 Copynumber: 3.2 Consensus size: 87
2997 GCAGATTCTG
3007 TCACCCTAAACAGTAGTGGAGCAGATGAAATATGATGAATCTTATCTTCCCAGTACAGTGGAGAA
1 TCACCCTAAACAGTAGTGGAGCAGATGAAATATGATGAATCTTATCTTCCCAGTACAGTGGAGAA
3072 GCAGATTTAAGCCATTAGTCCTA
66 GCAGATTTAAG-CATTAGTCCTA
* * * ** * * * * *
3095 TCACCCTAAGCAGTAGTGGAGTAGGTTGAAGAT-TGCGGATTC-TGTC-ACCCTAAGCAGTAGTG
1 TCACCCTAAACAGTAGTGGAGCA-GATGAA-ATATGATGAATCTTATCTTCCC--AGTA-CAGTG
* * * *
3157 GAGTAG--G-TTGAAG-ATTGCAGATTCTG
61 GAGAAGCAGATTTAAGCATT--AG-TCCTA
3183 TCACCCTAAACAGTAGTGGAGCAGATGAAATATGATGAATCTTATCTTCCCAGTACAGTGGAGAA
1 TCACCCTAAACAGTAGTGGAGCAGATGAAATATGATGAATCTTATCTTCCCAGTACAGTGGAGAA
3248 GCAGATTTAAGTCATTAGTCCTA
66 GCAGATTTAAG-CATTAGTCCTA
* * *
3271 TGATCCTAAGCAGTAGTGGAG
1 TCACCCTAAACAGTAGTGGAG
3292 TAGGTTGAAG
Statistics
Matches: 150, Mismatches: 31, Indels: 32
0.70 0.15 0.15
Matches are distributed among these distances:
85 3 0.02
86 11 0.07
87 24 0.16
88 74 0.49
89 24 0.16
90 11 0.07
91 3 0.02
ACGTcount: A:0.31, C:0.18, G:0.25, T:0.27
Consensus pattern (87 bp):
TCACCCTAAACAGTAGTGGAGCAGATGAAATATGATGAATCTTATCTTCCCAGTACAGTGGAGAA
GCAGATTTAAGCATTAGTCCTA
Found at i:3145 original size:44 final size:44
Alignment explanation
Indices: 3095--3203 Score: 200
Period size: 44 Copynumber: 2.5 Consensus size: 44
3085 ATTAGTCCTA
*
3095 TCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCGGATTCTG
1 TCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTG
3139 TCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTG
1 TCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTG
*
3183 TCACCCTAAACAGTAGTGGAG
1 TCACCCTAAGCAGTAGTGGAG
3204 CAGATGAAAT
Statistics
Matches: 63, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
44 63 1.00
ACGTcount: A:0.28, C:0.17, G:0.29, T:0.26
Consensus pattern (44 bp):
TCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTG
Found at i:3266 original size:176 final size:176
Alignment explanation
Indices: 2969--3332 Score: 656
Period size: 176 Copynumber: 2.1 Consensus size: 176
2959 CCTATCTCCT
*
2969 TAAGCAGTAGTCAAATAGGTTGAAGATTGCAGATTCTGTCACCCTAAACAGTAGTGGAGCAGATG
1 TAAGCAGTAGTGAAATAGGTTGAAGATTGCAGATTCTGTCACCCTAAACAGTAGTGGAGCAGATG
3034 AAATATGATGAATCTTATCTTCCCAGTACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCAC
66 AAATATGATGAATCTTATCTTCCCAGTACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCAC
*
3099 CCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCGGATTCTGTCACCC
131 CCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCC
* *
3145 TAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAACAGTAGTGGAGCAGATG
1 TAAGCAGTAGTGAAATAGGTTGAAGATTGCAGATTCTGTCACCCTAAACAGTAGTGGAGCAGATG
* * *
3210 AAATATGATGAATCTTATCTTCCCAGTACAGTGGAGAAGCAGATTTAAGTCATTAGTCCTATGAT
66 AAATATGATGAATCTTATCTTCCCAGTACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCAC
3275 CCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCC
131 CCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCC
*
3321 TATGCAGTAGTG
1 TAAGCAGTAGTG
3333 CAGCGGATCG
Statistics
Matches: 180, Mismatches: 8, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
176 180 1.00
ACGTcount: A:0.31, C:0.17, G:0.25, T:0.27
Consensus pattern (176 bp):
TAAGCAGTAGTGAAATAGGTTGAAGATTGCAGATTCTGTCACCCTAAACAGTAGTGGAGCAGATG
AAATATGATGAATCTTATCTTCCCAGTACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCAC
CCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCC
Found at i:3430 original size:308 final size:308
Alignment explanation
Indices: 2868--3479 Score: 874
Period size: 308 Copynumber: 2.0 Consensus size: 308
2858 NNNNNNNNNN
* *
2868 GATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAATATAATAAATCTTATCTTCCCAATGCAG
1 GATTCTGTCACCCTAAACAGTAGTGGAGCAGATCGAATATAATAAATCTTATCTTCCCAATACAG
*
2933 TGGAGAAGAAGATTTAAGCCATTAGTCCTATCTCCTTAAGCAGTAGTCAAATAGGTTGAAGATTG
66 TGGAGAAGAAGATTTAAGCCATTAGTCCTATATCCTTAAGCAGTAGTCAAATAGGTTGAAGATTG
* * *
2998 CAGATTCTGTCACCCTAAACAGTAGTGGAGCAGATGAAATATGATGAATCTTATCTTCCCAGTAC
131 CAGATTCTGTCACCCTAAACAGTAGTGCAGCAGATGAAAGATGATGAATCTTATCTTCCAAGTAC
* * * *
3063 AGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGAT
196 AGTGGAGAAGCAGATGTAAGCCATTAGTCCAATCACCCTAAGCAGTAGTCGAATAGGTTGAAGAT
* * *
3128 TGCGGATTCTGTCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCA
261 TGCAGATTCTGTCACCCTAAGCAGTAGTGGAGTAGATCGAAGATTGCA
* * *
3176 GATTCTGTCACCCTAAACAGTAGTGGAGCAGAT-GAAATATGATGAATCTTATCTTCCCAGTACA
1 GATTCTGTCACCCTAAACAGTAGTGGAGCAGATCG-AATATAATAAATCTTATCTTCCCAATACA
* * ** *
3240 GTGGAGAAGCAGATTTAAGTCATTAGTCCTATGATCC-TAAGCAGTAGTGGAGTAGGTTGAAGAT
65 GTGGAGAAGAAGATTTAAGCCATTAGTCCTAT-ATCCTTAAGCAGTAGTCAAATAGGTTGAAGAT
** * *
3304 TGCAGATTCTGTCACCCTATGCAGTAGTGCAGCGGATCG-AAGATGGTGAATCATT-TCTTCTCA
129 TGCAGATTCTGTCACCCTAAACAGTAGTGCAGCAGAT-GAAAGATGATGAATC-TTATCTTC-CA
* * *
3367 AG-AGAGTGGAGAAGCAGATGTAAGCCATTAGTCCAATCTCCCTAAGCAGTTGTCGAATAGGTTG
191 AGTACAGTGGAGAAGCAGATGTAAGCCATTAGTCCAATCACCCTAAGCAGTAGTCGAATAGGTTG
* *
3431 AAGATTGCAGATTCTGTCACCCTAAGGAGTGGTGGAGTAGATCGAAGAT
256 AAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGTAGATCGAAGAT
3480 GGTGAATCTT
Statistics
Matches: 269, Mismatches: 30, Indels: 10
0.87 0.10 0.03
Matches are distributed among these distances:
307 1 0.00
308 259 0.96
309 9 0.03
ACGTcount: A:0.31, C:0.17, G:0.25, T:0.27
Consensus pattern (308 bp):
GATTCTGTCACCCTAAACAGTAGTGGAGCAGATCGAATATAATAAATCTTATCTTCCCAATACAG
TGGAGAAGAAGATTTAAGCCATTAGTCCTATATCCTTAAGCAGTAGTCAAATAGGTTGAAGATTG
CAGATTCTGTCACCCTAAACAGTAGTGCAGCAGATGAAAGATGATGAATCTTATCTTCCAAGTAC
AGTGGAGAAGCAGATGTAAGCCATTAGTCCAATCACCCTAAGCAGTAGTCGAATAGGTTGAAGAT
TGCAGATTCTGTCACCCTAAGCAGTAGTGGAGTAGATCGAAGATTGCA
Found at i:4491 original size:132 final size:132
Alignment explanation
Indices: 3142--4452 Score: 1950
Period size: 132 Copynumber: 9.9 Consensus size: 132
3132 GATTCTGTCA
* ** ** * *
3142 CCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAACAGTAGTGGAGCAG
1 CCCTAAGGAGTAGAAGAGTAGGTTGAAGATTATAGATTCTGTCACCCTAAACAGTAGAGGAGCTG
* * * *
3207 AT-GAAATATGATGAATCTTATCTTCCCAGTACAGTGGAGAAGCAGATTTAAGTCATTAGTCCTA
66 ATCG-AATATGATGAATCTTATCTTCCCAATTCAGTGGAGAAGCAGATTTAAGCCATTAGACCTA
*
3271 TGAT
130 T-CT
* ** ** ** * * *
3275 -CCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTATGCAGTAGTGCAGCGG
1 CCCTAAGGAGTAGAAGAGTAGGTTGAAGATTATAGATTCTGTCACCCTAAACAGTAGAGGAGCTG
* * * *** * * *
3339 ATCGAAGATGGTGAATCATT-TCTTCTCAAGAGAGTGGAGAAGCAGATGTAAGCCATTAGTCCAA
66 ATCGAATATGATGAATC-TTATCTTCCCAATTCAGTGGAGAAGCAGATTTAAGCCATTAGACCTA
3403 TCT
130 TCT
* * ** * ** ** * *
3406 CCCTAAGCAGTTGTCGAATAGGTTGAAGATTGCAGATTCTGTCACCCTAAGGAGTGGTGGAG-TA
1 CCCTAAGGAGTAGAAGAGTAGGTTGAAGATTATAGATTCTGTCACCCTAAACAGTAGAGGAGCT-
* * * * * *
3470 GATCGAAGATGGTGAATCTTATCTTCCTAATACAATAGAGAAGCAGATTTAAGCCATTAGACCTA
65 GATCGAATATGATGAATCTTATCTTCCCAATTCAGTGGAGAAGCAGATTTAAGCCATTAGACCTA
3535 TCT
130 TCT
3538 CCCTAAGGAGTAGAAGAGTAGGTTGAAGATTATAGATTCTGTCACCCTAAACAGTAGAGGAGCTG
1 CCCTAAGGAGTAGAAGAGTAGGTTGAAGATTATAGATTCTGTCACCCTAAACAGTAGAGGAGCTG
3603 ATCGAATATGATGAATCTTATCTTCCCAATTCAGTGGAGAAGCAGATTTAAGCCATTAGACCTAT
66 ATCGAATATGATGAATCTTATCTTCCCAATTCAGTGGAGAAGCAGATTTAAGCCATTAGACCTAT
3668 CT
131 CT
3670 CCCTAAGGAGTAGAAGAGTAGGTTGAAGATTATAGATTCTGTCACCCTAAACAGTAGAGGAGCTG
1 CCCTAAGGAGTAGAAGAGTAGGTTGAAGATTATAGATTCTGTCACCCTAAACAGTAGAGGAGCTG
3735 ATCGAATATGATGAATCTTATCTTCCCAATTCAGTGGAGAAGCAGATTTAAGCCATTAGACCTAT
66 ATCGAATATGATGAATCTTATCTTCCCAATTCAGTGGAGAAGCAGATTTAAGCCATTAGACCTAT
3800 CT
131 CT
3802 CCCTAAGGAGTAGAAGAGTAGGTTGAAGATTATAGATTCTGTCACCCTAAACAGTAGAGGAGCTG
1 CCCTAAGGAGTAGAAGAGTAGGTTGAAGATTATAGATTCTGTCACCCTAAACAGTAGAGGAGCTG
3867 ATCGAATATGATGAATCTTATCTTCCCAATTCAGTGGAGAAGCAGATTTAAGCCATTAGACCTAT
66 ATCGAATATGATGAATCTTATCTTCCCAATTCAGTGGAGAAGCAGATTTAAGCCATTAGACCTAT
3932 CT
131 CT
3934 CCCTAAGGAGTAGAAGAGTAGGTTGAAGATTATAGATTCTGTCACCCTAAACAGTAGAGGAGCTG
1 CCCTAAGGAGTAGAAGAGTAGGTTGAAGATTATAGATTCTGTCACCCTAAACAGTAGAGGAGCTG
3999 ATCGAATATGATGAATCTTATCTTCCCAATTCAGTGGAGAAGCAGATTTAAGCCATTAGACCTAT
66 ATCGAATATGATGAATCTTATCTTCCCAATTCAGTGGAGAAGCAGATTTAAGCCATTAGACCTAT
4064 CT
131 CT
4066 CCCTAAGGAGTAGAAGAGTAGGTTGAAGATTATAGATTCTGTCACCCTAAACAGTAGAGGAGCTG
1 CCCTAAGGAGTAGAAGAGTAGGTTGAAGATTATAGATTCTGTCACCCTAAACAGTAGAGGAGCTG
4131 ATCGAATATGATGAATCTTATCTTCCCAATTCAGTGGAGAAGCAGATTTAAGCCATTAGACCTAT
66 ATCGAATATGATGAATCTTATCTTCCCAATTCAGTGGAGAAGCAGATTTAAGCCATTAGACCTAT
4196 CT
131 CT
4198 CCCTAAGGAGTAGAAGAGTAGGTTGAAGATTATAGATTCTGTCACCCTAAACAGTAGAGGAGCTG
1 CCCTAAGGAGTAGAAGAGTAGGTTGAAGATTATAGATTCTGTCACCCTAAACAGTAGAGGAGCTG
*
4263 ATCGAATATGATGAATCTTATCTTCCCAATTCAGTGGAGAAGCAGATTTAAGCCATTAGTCCTAT
66 ATCGAATATGATGAATCTTATCTTCCCAATTCAGTGGAGAAGCAGATTTAAGCCATTAGACCTAT
*
4328 CA
131 CT
* * ** * * * * *
4330 CCCTAAGCAGTGGTGGAGTAGGTTGAAGATTGCTA-ATGCTGTCACCCTAAGCAGTAGTGGAGCA
1 CCCTAAGGAGTAGAAGAGTAGGTTGAAGATT-ATAGATTCTGTCACCCTAAACAGTAGAGGAGCT
* * * * *
4394 GATCCAAGATTG-TGAATCTTATCTTGCAAATACAGTGGAGAAGCAGATTTAAGCCATTA
65 GATCGAATA-TGATGAATCTTATCTTCCCAATTCAGTGGAGAAGCAGATTTAAGCCATTA
4453 ATCATATCAC
Statistics
Matches: 1106, Mismatches: 64, Indels: 17
0.93 0.05 0.01
Matches are distributed among these distances:
131 3 0.00
132 1095 0.99
133 8 0.01
ACGTcount: A:0.32, C:0.17, G:0.23, T:0.27
Consensus pattern (132 bp):
CCCTAAGGAGTAGAAGAGTAGGTTGAAGATTATAGATTCTGTCACCCTAAACAGTAGAGGAGCTG
ATCGAATATGATGAATCTTATCTTCCCAATTCAGTGGAGAAGCAGATTTAAGCCATTAGACCTAT
CT
Found at i:4526 original size:220 final size:220
Alignment explanation
Indices: 4239--4711 Score: 662
Period size: 220 Copynumber: 2.1 Consensus size: 220
4229 ATAGATTCTG
* * * *
4239 TCACCCTAAACAGTAGAGGAGCT-GATCGAATATGATGAATCTTATCTTCCCAATTCAGTGGAGA
1 TCACCCTAAACAGTAGTGGAG-TAGATCGAAGATGATGAATCTTATCTTCCCAATACAGTGCAGA
**
4303 AGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTGGTGGAGTAGGTTGAAGATTGCTA-AT
65 AGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAATGGAGTAGGTTGAAGATTGC-AGAT
* * *
4367 GCTGTCACCCTAAGCAGTAGTGGAGCAGATCCAAGATTGTGAATCTTATCTTGCAAATACAGTGG
129 GCTGTCACCCTAAGCAGTAGTGCAGCAGATCCAAGATGGTGAATCTTATCTTCCAAATACAGTGG
* *
4432 AGAAGCAGATTTAAGCCATTAATCATA
194 AGAAACAAATTTAAGCCATTAATCATA
* * * * *
4459 TCACCCTAAACTGTAGTGGCGTAGATCGAAGATGGTGAATCTTATGTTCCCAATAGAGTGCAGAA
1 TCACCCTAAACAGTAGTGGAGTAGATCGAAGATGATGAATCTTATCTTCCCAATACAGTGCAGAA
* *
4524 GCAGATTTAAGTCATTAGTCCTATCACCCTAAGCAGTAATGGAGTAGGTTGAAGATTGCAGATTC
66 GCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAATGGAGTAGGTTGAAGATTGCAGATGC
* * * *
4589 TGTCACCCTAAGCAGTAGTGCAGCGGATCGAAGATGGTGAATCTTATTTTCCGAATACAGTGGAG
131 TGTCACCCTAAGCAGTAGTGCAGCAGATCCAAGATGGTGAATCTTATCTTCCAAATACAGTGGAG
* *
4654 AAACAAATTTAAGCCATTAGTCCTA
196 AAACAAATTTAAGCCATTAATCATA
* * * *
4679 TCATCCTAAGCAGTAGTGGAGTAGGTTGAAGAT
1 TCACCCTAAACAGTAGTGGAGTAGATCGAAGAT
4712 TGCAGATTCT
Statistics
Matches: 221, Mismatches: 30, Indels: 4
0.87 0.12 0.02
Matches are distributed among these distances:
219 2 0.01
220 219 0.99
ACGTcount: A:0.32, C:0.18, G:0.23, T:0.27
Consensus pattern (220 bp):
TCACCCTAAACAGTAGTGGAGTAGATCGAAGATGATGAATCTTATCTTCCCAATACAGTGCAGAA
GCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAATGGAGTAGGTTGAAGATTGCAGATGC
TGTCACCCTAAGCAGTAGTGCAGCAGATCCAAGATGGTGAATCTTATCTTCCAAATACAGTGGAG
AAACAAATTTAAGCCATTAATCATA
Found at i:4578 original size:88 final size:88
Alignment explanation
Indices: 4371--4579 Score: 265
Period size: 88 Copynumber: 2.4 Consensus size: 88
4361 GCTAATGCTG
* * * * *
4371 TCACCCTAAGCAGTAGTGGAGCAGATCCAAGATTGTGAATCTTATCTTGCAAATACAGTGGAGAA
1 TCACCCTAAGCAGTAGTGGAGTAGATCGAAGATGGTGAATCTTATCTTCCAAATACAGTGCAGAA
4436 GCAGATTTAAGCCATTAATCATA
66 GCAGATTTAAGCCATTAATCATA
* * * * * *
4459 TCACCCTAAACTGTAGTGGCGTAGATCGAAGATGGTGAATCTTATGTTCCCAATAGAGTGCAGAA
1 TCACCCTAAGCAGTAGTGGAGTAGATCGAAGATGGTGAATCTTATCTTCCAAATACAGTGCAGAA
* * *
4524 GCAGATTTAAGTCATTAGTCCTA
66 GCAGATTTAAGCCATTAATCATA
* * *
4547 TCACCCTAAGCAGTAATGGAGTAGGTTGAAGAT
1 TCACCCTAAGCAGTAGTGGAGTAGATCGAAGAT
4580 TGCAGATTCT
Statistics
Matches: 101, Mismatches: 20, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
88 101 1.00
ACGTcount: A:0.33, C:0.18, G:0.22, T:0.27
Consensus pattern (88 bp):
TCACCCTAAGCAGTAGTGGAGTAGATCGAAGATGGTGAATCTTATCTTCCAAATACAGTGCAGAA
GCAGATTTAAGCCATTAATCATA
Found at i:4620 original size:352 final size:352
Alignment explanation
Indices: 4107--4804 Score: 979
Period size: 352 Copynumber: 2.0 Consensus size: 352
4097 ATAGATTCTG
* * *
4107 TCACCCTAAACAGTAGAGGAGCTGATCGAATATGATGAATCTTATCTTCCCAATTCAGTGGAGAA
1 TCACCCTAAACAGTAGAGGAGCTGATCGAAGATGATGAATCTTATCTTCCCAATACAGTGCAGAA
* * *
4172 GCAGATTTAAGCCATTAGACCTATCTCCCTAAGGAGTAGAAGAGTAGGTTGAAGATTATAGATTC
66 GCAGATTTAAGCCATTAGACCTATCACCCTAAGCAGTAGAAGAGTAGGTTGAAGATTACAGATTC
* * * *
4237 TGTCACCCTAAACAGTAGAGGAGCTGATCGAATATGATGAATCTTATCTTCCCAATTCAGTGGAG
131 TGTCACCCTAAACAGTAGAGCAGCGGATCGAAGATGATGAATCTTATCTTCCCAATACAGTGGAG
* * *
4302 AAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTGGTGGAGTAGGTTGAAGATTGCTA-A
196 AAACAAATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGC-AGA
* * * * *
4366 TGCTGTCACCCTAAGCAGTAGTGGAGCAGATCCAAGATTGTGAATCTTATCTTGCAAATACAGTG
260 TGCTGTCACCCTAAGCAATAGTGGAGCAGATCCAAGATGGTGAATCTGATCTTCCAAATACAGTA
4431 GAGAAGCAGATTTAAGCCATTAATCATA
325 GAGAAGCAGATTTAAGCCATTAATCATA
* * * * * *
4459 TCACCCTAAACTGTAGTGGCG-TAGATCGAAGATGGTGAATCTTATGTTCCCAATAGAGTGCAGA
1 TCACCCTAAACAGTAGAGGAGCT-GATCGAAGATGATGAATCTTATCTTCCCAATACAGTGCAGA
* * * *
4523 AGCAGATTTAAGTCATTAGTCCTATCACCCTAAGCAGTA-ATGGAGTAGGTTGAAGATTGCAGAT
65 AGCAGATTTAAGCCATTAGACCTATCACCCTAAGCAGTAGA-AGAGTAGGTTGAAGATTACAGAT
* * * * *
4587 TCTGTCACCCTAAGCAGTAGTGCAGCGGATCGAAGATGGTGAATCTTATTTTCCGAATACAGTGG
129 TCTGTCACCCTAAACAGTAGAGCAGCGGATCGAAGATGATGAATCTTATCTTCCCAATACAGTGG
*
4652 AGAAACAAATTTAAGCCATTAGTCCTATCATCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAG
194 AGAAACAAATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAG
* * * * *
4717 ATTCTGTCACCCTAAGCAATCGTGGAGTAGATCGAAGATGGTGAATCTGATCTTCCCAATACAGT
259 ATGCTGTCACCCTAAGCAATAGTGGAGCAGATCCAAGATGGTGAATCTGATCTTCCAAATACAGT
* *
4782 AGAGAAGTAGATTTGAGCCATTA
324 AGAGAAGCAGATTTAAGCCATTA
4805 CACCTATCTC
Statistics
Matches: 302, Mismatches: 41, Indels: 6
0.87 0.12 0.02
Matches are distributed among these distances:
351 3 0.01
352 299 0.99
ACGTcount: A:0.32, C:0.18, G:0.23, T:0.27
Consensus pattern (352 bp):
TCACCCTAAACAGTAGAGGAGCTGATCGAAGATGATGAATCTTATCTTCCCAATACAGTGCAGAA
GCAGATTTAAGCCATTAGACCTATCACCCTAAGCAGTAGAAGAGTAGGTTGAAGATTACAGATTC
TGTCACCCTAAACAGTAGAGCAGCGGATCGAAGATGATGAATCTTATCTTCCCAATACAGTGGAG
AAACAAATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGAT
GCTGTCACCCTAAGCAATAGTGGAGCAGATCCAAGATGGTGAATCTGATCTTCCAAATACAGTAG
AGAAGCAGATTTAAGCCATTAATCATA
Found at i:4733 original size:44 final size:44
Alignment explanation
Indices: 4683--4875 Score: 119
Period size: 44 Copynumber: 4.4 Consensus size: 44
4673 GTCCTATCAT
4683 CCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCAC
1 CCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCAC
* * * * ** * *
4727 CCTAAGCAATCGTGGAGTAGATCGAAGA-TGGTGAATCTGATCTTC
1 CCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTG-TC-AC
* * * * * * * *
4772 CC-AATACAGTAGAGAAGTAGATTTG-AGCCATT--ACA-CCTATCTC
1 CCTAA-GCAGTAGTGGAGTAG-GTTGAAG--ATTGCAGATTCTGTCAC
* *
4815 CCAAAGCAGTAGTGGAGTAGGTTGAAGATTACAGATTCTGTCAC
1 CCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCAC
*
4859 CCTAAACAGTAGTGGAG
1 CCTAAGCAGTAGTGGAG
4876 CATATCAAAT
Statistics
Matches: 108, Mismatches: 29, Indels: 24
0.67 0.18 0.15
Matches are distributed among these distances:
41 3 0.03
42 3 0.03
43 28 0.26
44 52 0.48
45 17 0.16
46 3 0.03
47 1 0.01
48 1 0.01
ACGTcount: A:0.31, C:0.18, G:0.25, T:0.25
Consensus pattern (44 bp):
CCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCAC
Found at i:5424 original size:176 final size:176
Alignment explanation
Indices: 5214--5591 Score: 587
Period size: 176 Copynumber: 2.1 Consensus size: 176
5204 CTATCTCCCA
*
5214 AAGCAGTAGTGGAGTAGATTGAAGATTACAGATTCTGTCACCCTAAACAGTAGTGGAGCATATCA
1 AAGCAGTAGTGGAGTAGATTGAAGATTACAGATTCTGTCACCCTAAACAGTAGTGGAGCAGATCA
* * * *
5279 AATATGATGAA-TCTTATCTTCCCAATACAGTAGAGAAGTAGATTTGAGCCATTACACCTATCTC
66 AAGATGAT-AATTCTTATCTTCCCAATACAGTAGAAAAGAAGATTTAAGCCATTACACCTATCTC
* *
5343 CCAAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCT
130 CCAAAGCAGTAGTCGAATAGGTTGAAGATTGCAGATTCTGTCACCCT
* * * *
5390 AAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCG
1 AAGCAGTAGTGGAGTAGATTGAAGATTACAGATTCTGTCACCCTAAACAGTAGTGGAGCAGATCA
* * **
5455 AAGATGATAATTCTTATTTTCCCAATACAGTGGAAAAGAAGATTTAAGCCATTAGTCCTATCTCC
66 AAGATGATAATTCTTATCTTCCCAATACAGTAGAAAAGAAGATTTAAGCCATTACACCTATCTCC
*
5520 CTAAGCAGTAGTCGAATAGGTTGAAGATTGCAGATTCTGTCACCCT
131 CAAAGCAGTAGTCGAATAGGTTGAAGATTGCAGATTCTGTCACCCT
*
5566 AAGCAGTAGTGGAGTAGATCGAAGAT
1 AAGCAGTAGTGGAGTAGATTGAAGAT
5592 GGTGAATCTT
Statistics
Matches: 183, Mismatches: 18, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
175 2 0.01
176 181 0.99
ACGTcount: A:0.33, C:0.17, G:0.23, T:0.27
Consensus pattern (176 bp):
AAGCAGTAGTGGAGTAGATTGAAGATTACAGATTCTGTCACCCTAAACAGTAGTGGAGCAGATCA
AAGATGATAATTCTTATCTTCCCAATACAGTAGAAAAGAAGATTTAAGCCATTACACCTATCTCC
CAAAGCAGTAGTCGAATAGGTTGAAGATTGCAGATTCTGTCACCCT
Found at i:5954 original size:220 final size:220
Alignment explanation
Indices: 5691--6151 Score: 643
Period size: 220 Copynumber: 2.1 Consensus size: 220
5681 ATAGATTCTG
* * * * *
5691 TCACCCTAAACAGTAGTTGAGCAGATCGAATATGATAAATCTTATCTTCCCAATACAGTGGAGAA
1 TCACCCTAAGCAGTAGTGGAGCAGATCCAAGATGATAAATCTTATCTTCCCAATACAGTGCAGAA
** *
5756 GCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTGGTGGAGTAGGTTGAAGATTGCTGATTC
66 GCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAATGGAGTAGGTTGAAGATTGCAGATTC
* * *
5821 TGTCACCCGAAGCAGTAGTGGAGCAGATCCAAGATTGTGAATCCTATCTTGCAAATACAGTGGAG
131 TGTCACCCGAAGCAGTAGTGCAGCAGATCCAAGATGGTGAATCCTATCTTCCAAATACAGTGGAG
* *
5886 AAGCAGATTTAAGCCATTAATCCTA
196 AAACAAATTTAAGCCATTAATCCTA
* * * * *
5911 TCACCCTAAGCAGTAGTGGCGCAGATCCAAGATGGTGAATCTTATGTTCCCAATAGAGTGCAGAA
1 TCACCCTAAGCAGTAGTGGAGCAGATCCAAGATGATAAATCTTATCTTCCCAATACAGTGCAGAA
*
5976 GCAGATTTAAGTCATTAGTCCTATCACCCTAAGCAGTAATGGAGTAGGTTGAAGATTGCAGATTC
66 GCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAATGGAGTAGGTTGAAGATTGCAGATTC
** * ** * * *
6041 TGTCACCCTCAGCAGTAGTGCAGCGGATTGAAGATGGTGAATCTTATCTTCCCAATATAGTGGAG
131 TGTCACCCGAAGCAGTAGTGCAGCAGATCCAAGATGGTGAATCCTATCTTCCAAATACAGTGGAG
*
6106 AAACAAATTTAAGCCATTAGTCCTA
196 AAACAAATTTAAGCCATTAATCCTA
* * *
6131 TCATCGTAAGCAGTAGCGGAG
1 TCACCCTAAGCAGTAGTGGAG
6152 TCGGTTGAAG
Statistics
Matches: 209, Mismatches: 32, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
220 209 1.00
ACGTcount: A:0.31, C:0.20, G:0.23, T:0.26
Consensus pattern (220 bp):
TCACCCTAAGCAGTAGTGGAGCAGATCCAAGATGATAAATCTTATCTTCCCAATACAGTGCAGAA
GCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAATGGAGTAGGTTGAAGATTGCAGATTC
TGTCACCCGAAGCAGTAGTGCAGCAGATCCAAGATGGTGAATCCTATCTTCCAAATACAGTGGAG
AAACAAATTTAAGCCATTAATCCTA
Found at i:6031 original size:88 final size:88
Alignment explanation
Indices: 5823--6019 Score: 286
Period size: 88 Copynumber: 2.2 Consensus size: 88
5813 GCTGATTCTG
* * * *
5823 TCACCCGAAGCAGTAGTGGAGCAGATCCAAGATTGTGAATCCTATCTTGCAAATACAGTGGAGAA
1 TCACCCTAAGCAGTAGTGGAGCAGATCCAAGATGGTGAATCCTATCTTCCAAATACAGTGCAGAA
5888 GCAGATTTAAGCCATTAATCCTA
66 GCAGATTTAAGCCATTAATCCTA
* * * * *
5911 TCACCCTAAGCAGTAGTGGCGCAGATCCAAGATGGTGAATCTTATGTTCCCAATAGAGTGCAGAA
1 TCACCCTAAGCAGTAGTGGAGCAGATCCAAGATGGTGAATCCTATCTTCCAAATACAGTGCAGAA
* *
5976 GCAGATTTAAGTCATTAGTCCTA
66 GCAGATTTAAGCCATTAATCCTA
*
5999 TCACCCTAAGCAGTAATGGAG
1 TCACCCTAAGCAGTAGTGGAG
6020 TAGGTTGAAG
Statistics
Matches: 96, Mismatches: 13, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
88 96 1.00
ACGTcount: A:0.32, C:0.21, G:0.22, T:0.24
Consensus pattern (88 bp):
TCACCCTAAGCAGTAGTGGAGCAGATCCAAGATGGTGAATCCTATCTTCCAAATACAGTGCAGAA
GCAGATTTAAGCCATTAATCCTA
Found at i:6038 original size:484 final size:485
Alignment explanation
Indices: 3975--6415 Score: 2183
Period size: 484 Copynumber: 5.0 Consensus size: 485
3965 ATAGATTCTG
* * * * * ** *
3975 TCACCCTAAACAGTAGAGGAGCTGATCGAATATGATGAATCTTATCTTCCCAATTCAGTGGAGAA
1 TCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGATGAATCTTATGTTCCCAATAGAGTGCAGAA
* * * * **
4040 GCAGATTTAAGCCATTAGACCTATCTCCCTAAGGAGTAGA-AGAGTAGGTTGAAGATTATAGATT
66 GCAGATTTAAGTCATTAGTCCTATCTCCCTAAGCAGTA-ATGGAGTAGGTTGAAGATTGCAGATT
* * * * *
4104 CTGTCACCCTAAACAGTAGAGGAGCT-GATCGAATATGATGAATCTTATCTTCCCAATTCAGTGG
130 CTGTCACCCTAAGCAGTAGTGGAG-TAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGG
* * *
4168 AGAAGCAGATTTAAGCCATTAGACCTATC-TCCCTAAGGAGTAG-AAGAGTAGGTTGAAGATTAT
194 AGAAGCAAATTTAAGCCATTAGACCTATCATCCCTAAGCAGTAGTGA-AGTAGGTTGAAGATTAT
* * *
4231 AGATTCTGTCACCCTAAACAGTAGAGGAGCT-GATCGAATATGATGAATCTTATCTTCCCAATTC
258 AGATTCTGTCACCCTAAACAGTAGTGGAG-TAGATCGAAGATGATGAATCTTATCTTCCCAATAC
* *
4295 AGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTGGTGGAGTAGGTTGAAGAT
322 AGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCTCCCTAAGCAGTAGTGGAGTAGGTTGAAGAT
* * *
4360 TGCTA-ATGCTGTCACCCTAAGCAGTAGTGGAGCAGATCCAAGATTGTGAATCTTATCTTGCAAA
387 TGC-AGATTCTGTCACCCGAAGCAGTAGTGGAGCAGATCCAAGATTGTGAATCTTATCTTCCAAA
*
4424 TACAGTGGAGAAGCAGATTTAAGCCATTAATCATA
451 TACAGTGGAGAAGCAGATTTAAGCCATTAATCCTA
* * * * *
4459 TCACCCTAAACTGTAGTGGCGTAGATCGAAGATGGTGAATCTTATGTTCCCAATAGAGTGCAGAA
1 TCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGATGAATCTTATGTTCCCAATAGAGTGCAGAA
*
4524 GCAGATTTAAGTCATTAGTCCTATCACCCTAAGCAGTAATGGAGTAGGTTGAAGATTGCAGATTC
66 GCAGATTTAAGTCATTAGTCCTATCTCCCTAAGCAGTAATGGAGTAGGTTGAAGATTGCAGATTC
* ** * *
4589 TGTCACCCTAAGCAGTAGTGCAGCGGATCGAAGATGGTGAATCTTATTTTCCGAATACAGTGGAG
131 TGTCACCCTAAGCAGTAGTGGAGTAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAG
* * * **
4654 AAACAAATTTAAGCCATTAGTCCTATCAT-CCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGA
196 AAGCAAATTTAAGCCATTAGACCTATCATCCCTAAGCAGTAGTGAAGTAGGTTGAAGATTATAGA
* * * * * *
4718 TTCTGTCACCCTAAGCAATCGTGGAGTAGATCGAAGATGGTGAATCTGATCTTCCCAATACAGTA
261 TTCTGTCACCCTAAACAGTAGTGGAGTAGATCGAAGATGATGAATCTTATCTTCCCAATACAGTG
* * ** * *
4783 GAGAAGTAGATTTGAGCCATTACACCTATCTCCCAAAGCAGTAGTGGAGTAGGTTGAAGATTACA
326 GAGAAGCAGATTTAAGCCATTAGTCCTATCTCCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCA
* * * *
4848 GATTCTGTCACCCTAAACAGTAGTGGAGCATAT-CAA-ATATGATGAATCTTATCTTCCCAATAC
391 GATTCTGTCACCCGAAGCAGTAGTGGAGCAGATCCAAGAT-TG-TGAATCTTATCTTCCAAATAC
* * *
4911 AGTAGAGAAGTAGATTTGAGCCATTACA-CCTA
454 AGTGGAGAAGCAGATTTAAGCCATTA-ATCCTA
* * * * ** * * *
4943 TCTCCCAAAGCAGTAGTGGAGTAGATTGAAGAT--T-ACAGATTCTGTCACCCTAAACAGTAGTG
1 TCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGATGA-ATCTTATGT-TCCC--AATAG-AGTG
* ** * * * * * * * *
5005 --G-AGCATATCAAATATGATGAATCTTATCTTCCC-AATACAGTAGA-GAAGTAGATTTG-AGC
61 CAGAAGCAGATTTAA-GTCATTAGTCCTATC-TCCCTAA-GCAGTA-ATGGAGTAG-GTTGAAG-
* * * * * * *** * * *
5064 CATT--ACA-CCTATCTCCCAAAGCAGTAGTGGAGTAGATTGAAGATTACAGATTC-TGTC-ACC
120 -ATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGTAGATCGAAGA-TGGTGAATCTTATCTTCC
* * * * * ** * * * * *
5124 CTAA-ACAGTAGTGGAGCATA-TCAA-ATATGATGAATCTTATCTTCCC-AATACAGTAGAGAAG
183 C-AATACAGTGGAGAAGCAAATTTAAGCCATTA-G-A-CCTATCATCCCTAA-GCAGTAGTGAAG
* * * * * * * *
5185 TAGATTTG-AGCCA-T-TACA-CCTATCTCCC-AAAGCAGTAGTGGAGTAGATTGAAGATTACAG
243 TAG-GTTGAAG--ATTATAGATTCTGTCACCCTAAA-CAGTAGTGGAGTAGATCGAAGATGA-TG
* * * * * * * ** *** * * * *
5245 ATTC-TGTC-ACCCTAA-ACAGTAGTGGAGCATATCAAATATGATGAATCTTATCTTCCC-AATA
303 AATCTTATCTTCCC-AATACAGTGGAGAAGCAGATTTAA-GCCATTAGTCCTATC-TCCCTAA-G
* * * * * * * * * * **
5306 CAGTAGAGAAGTAGATTTG-AGCCATT--ACA-CCTATCTCCCAAAGCAGTAGTGGAGTAGGTTG
364 CAGTAGTGGAGTAG-GTTGAAG--ATTGCAGATTCTGTCACCCGAAGCAGTAGTGGAGCAGATCC
* * * ** * * * * * * * * * *
5367 AAGATTGCAGATTC-TGTCACCCTAA-GCAGTAGTGGAGTAGGTTGAAG--ATTGCAGATTCTG
426 AAGATTG-TGAATCTTATCTTCCAAATACAGTGGAGAAGCAGATTTAAGCCATT--A-ATCCTA
* * * *
5427 TCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGAT-AATTCTTATTTTCCCAATACAGTGGAAA
1 TCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGATGAA-TCTTATGTTCCCAATAGAGTGCAGA
* * * * *
5491 AGAAGATTTAAGCCATTAGTCCTATCTCCCTAAGCAGTAGTCGAATAGGTTGAAGATTGCAGATT
65 AGCAGATTTAAGTCATTAGTCCTATCTCCCTAAGCAGTAATGGAGTAGGTTGAAGATTGCAGATT
* *
5556 CTGTCACCCTAAGCAGTAGTGGAGTAGATCGAAGATGGTGAATCTTAGCTTCCCAATACAGTAGA
130 CTGTCACCCTAAGCAGTAGTGGAGTAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGA
* * *
5621 GAAGCAGATTTAAGACATTAGACCTATC-TCCCTAAGGAGTAGTGAAGTAGGTTGAAGATTATAG
195 GAAGCAAATTTAAGCCATTAGACCTATCATCCCTAAGCAGTAGTGAAGTAGGTTGAAGATTATAG
* * * *
5685 ATTCTGTCACCCTAAACAGTAGTTGAGCAGATCGAATATGATAAATCTTATCTTCCCAATACAGT
260 ATTCTGTCACCCTAAACAGTAGTGGAGTAGATCGAAGATGATGAATCTTATCTTCCCAATACAGT
* *
5750 GGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTGGTGGAGTAGGTTGAAGATTGC
325 GGAGAAGCAGATTTAAGCCATTAGTCCTATCTCCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGC
* * *
5815 TGATTCTGTCACCCGAAGCAGTAGTGGAGCAGATCCAAGATTGTGAATCCTATCTTGCAAATACA
390 AGATTCTGTCACCCGAAGCAGTAGTGGAGCAGATCCAAGATTGTGAATCTTATCTTCCAAATACA
5880 GTGGAGAAGCAGATTTAAGCCATTAATCCTA
455 GTGGAGAAGCAGATTTAAGCCATTAATCCTA
* * *
5911 TCACCCTAAGCAGTAGTGGCGCAGATCCAAGATGGTGAATCTTATGTTCCCAATAGAGTGCAGAA
1 TCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGATGAATCTTATGTTCCCAATAGAGTGCAGAA
*
5976 GCAGATTTAAGTCATTAGTCCTATCACCCTAAGCAGTAATGGAGTAGGTTGAAGATTGCAGATTC
66 GCAGATTTAAGTCATTAGTCCTATCTCCCTAAGCAGTAATGGAGTAGGTTGAAGATTGCAGATTC
* * ** * *
6041 TGTCACCCTCAGCAGTAGTGCAGCGGATTGAAGATGGTGAATCTTATCTTCCCAATATAGTGGAG
131 TGTCACCCTAAGCAGTAGTGGAGTAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAG
* * * * * * **
6106 AAACAAATTTAAGCCATTAGTCCTATCAT-CGTAAGCAGTAGCGGAGTCGGTTGAAGATTGCAGA
196 AAGCAAATTTAAGCCATTAGACCTATCATCCCTAAGCAGTAGTGAAGTAGGTTGAAGATTATAGA
* * * *
6170 TTCTGTCACCCTAAGCATTAGTGGAGTAGATCGAAGATGGTGAATCTTATCTTCCCAATACACTG
261 TTCTGTCACCCTAAACAGTAGTGGAGTAGATCGAAGATGATGAATCTTATCTTCCCAATACAGTG
* * * ** *
6235 GAGAAGTAGATTTAAGCCATTAGTCCCATCTCCCTGAGCAGTAGTGGAGTAGGTCAAATATTGCA
326 GAGAAGCAGATTTAAGCCATTAGTCCTATCTCCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCA
* * * *
6300 GATTTTGTCACCCTGAA-CAG-ACGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATAC
391 GATTCTGTCACCC-GAAGCAGTA-GTGGAGCAGATCCAAGATTGTGAATCTTATCTTCCAAATAC
6363 AGTGGAGAAGCAGATTTAAGCCATTAATCCTA
454 AGTGGAGAAGCAGATTTAAGCCATTAATCCTA
6395 TCACCCTAAGCAGTAGTGGAG
1 TCACCCTAAGCAGTAGTGGAG
6416 TCAGTTGAGG
Statistics
Matches: 1530, Mismatches: 343, Indels: 168
0.75 0.17 0.08
Matches are distributed among these distances:
481 14 0.01
482 27 0.02
483 140 0.09
484 1158 0.76
485 150 0.10
486 27 0.02
487 14 0.01
ACGTcount: A:0.32, C:0.19, G:0.22, T:0.27
Consensus pattern (485 bp):
TCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGATGAATCTTATGTTCCCAATAGAGTGCAGAA
GCAGATTTAAGTCATTAGTCCTATCTCCCTAAGCAGTAATGGAGTAGGTTGAAGATTGCAGATTC
TGTCACCCTAAGCAGTAGTGGAGTAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAG
AAGCAAATTTAAGCCATTAGACCTATCATCCCTAAGCAGTAGTGAAGTAGGTTGAAGATTATAGA
TTCTGTCACCCTAAACAGTAGTGGAGTAGATCGAAGATGATGAATCTTATCTTCCCAATACAGTG
GAGAAGCAGATTTAAGCCATTAGTCCTATCTCCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCA
GATTCTGTCACCCGAAGCAGTAGTGGAGCAGATCCAAGATTGTGAATCTTATCTTCCAAATACAG
TGGAGAAGCAGATTTAAGCCATTAATCCTA
Found at i:6197 original size:616 final size:616
Alignment explanation
Indices: 5383--6545 Score: 1748
Period size: 616 Copynumber: 1.9 Consensus size: 616
5373 GCAGATTCTG
* *
5383 TCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAG
1 TCACCCTAAGCAGTAATGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGCAG
* *
5448 CAGATCGAAGATGATAATTCTTATTTTCCCAATACAGTGGAAAAGAAGATTTAAGCCATTAGTCC
66 CAGATCGAAGATGATAATTCTTATCTTCCCAATACAGTGGAAAACAAGATTTAAGCCATTAGTCC
5513 TATCTCCCTAAGCAGTAGTCGAATAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGG
131 TATCTCCCTAAGCAGTAGTCGAATAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGG
*
5578 AGTAGATCGAAGATGGTGAATCTTAGCTTCCCAATACAGTAGAGAAGCAGATTTAAGACATTAGA
196 AGTAGATCGAAGATGGTGAATCTTAGCTTCCCAATACACTAGAGAAGCAGATTTAAGACATTAGA
* * ** *
5643 CCTATCTCCCTAAGGAGTAGTGAAGTAGGTTGAAGATTATAGATTCTGTCACCCTAAACAGTA-G
261 CCCATCTCCCTAAGCAGTAGTGAAGTAGGTCAAAGATTACAGATTCTGTCACCCTAAACAG-ACG
* *
5707 TTGAGCAGATCGAATATGATAAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATT
325 TGGAGCAGATCGAAGATGATAAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATT
* * * *
5772 AGTCCTATCACCCTAAGCAGTGGTGGAGT-AGGTTGAAGATTGCTGATTCTGTCACCCGAAGCAG
390 AATCCTATCACCCTAAGCAGTAGTGGAGTCA-GTTGAAGATTGCAGATTCTGTCACCCGAACCAG
* * *
5836 TAGTGGA-GCAGATCCAA-GATTGTGAATCCTATCTTGCAAATACAGTGGAGAAGCAGATTTAAG
454 AAGT-GATGCAGAT-CAAGGATGGTGAATCCTATCTTCCAAATACAGTGGAGAAGCAGATTTAAG
5899 CCATTAATCCTATCACCCTAAGCAGTAGTGGCGCAGATCCAAGATGGTGAATCTTATGTTCCCAA
517 CCATTAATCCTATCACCCTAAGCAGTAGTGGCGCAGATCCAAGATGGTGAATCTTATGTTCCCAA
5964 TAGAGTGCAGAAGCAGATTTAAGTCATTAGTCCTA
582 TAGAGTGCAGAAGCAGATTTAAGTCATTAGTCCTA
*
5999 TCACCCTAAGCAGTAATGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTCAGCAGTAGTGCAG
1 TCACCCTAAGCAGTAATGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGCAG
* * * *
6064 CGGATTGAAGATGGTGAA-TCTTATCTTCCCAATATAGTGGAGAAACAA-ATTTAAGCCATTAGT
66 CAGATCGAAGATGAT-AATTCTTATCTTCCCAATACAGTGGA-AAACAAGATTTAAGCCATTAGT
* * * *
6127 CCTATCAT-CGTAAGCAGTAG-CGGAGTCGGTTGAAGATTGCAGATTCTGTCACCCTAAGCATTA
129 CCTATC-TCCCTAAGCAGTAGTC-GAATAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTA
* * * *
6190 GTGGAGTAGATCGAAGATGGTGAATCTTATCTTCCCAATACACTGGAGAAGTAGATTTAAGCCAT
192 GTGGAGTAGATCGAAGATGGTGAATCTTAGCTTCCCAATACACTAGAGAAGCAGATTTAAGACAT
* * * * * * *
6255 TAGTCCCATCTCCCTGAGCAGTAGTGGAGTAGGTCAAATATTGCAGATTTTGTCACCCTGAACAG
257 TAGACCCATCTCCCTAAGCAGTAGTGAAGTAGGTCAAAGATTACAGATTCTGTCACCCTAAACAG
* *
6320 ACGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCC
322 ACGTGGAGCAGATCGAAGATGATAAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCC
* *
6385 ATTAATCCTATCACCCTAAGCAGTAGTGGAGTCAGTTGAGGATTGCAGATTCTGTCACCCTAACC
387 ATTAATCCTATCACCCTAAGCAGTAGTGGAGTCAGTTGAAGATTGCAGATTCTGTCACCCGAACC
* * * * *
6450 AGAAGTGATGCAGATCAAGGATGGTGAATCTTGTCTTCCCAATATAGTGGAGAAGTAGATTTAAG
452 AGAAGTGATGCAGATCAAGGATGGTGAATCCTATCTTCCAAATACAGTGGAGAAGCAGATTTAAG
**
6515 CCATTCGTCCTATCACCCTAAGCAGTAGTGG
517 CCATTAATCCTATCACCCTAAGCAGTAGTGG
6546 AGTAGGTTGA
Statistics
Matches: 489, Mismatches: 50, Indels: 16
0.88 0.09 0.03
Matches are distributed among these distances:
615 7 0.01
616 473 0.97
617 9 0.02
ACGTcount: A:0.31, C:0.19, G:0.23, T:0.27
Consensus pattern (616 bp):
TCACCCTAAGCAGTAATGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGCAG
CAGATCGAAGATGATAATTCTTATCTTCCCAATACAGTGGAAAACAAGATTTAAGCCATTAGTCC
TATCTCCCTAAGCAGTAGTCGAATAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGG
AGTAGATCGAAGATGGTGAATCTTAGCTTCCCAATACACTAGAGAAGCAGATTTAAGACATTAGA
CCCATCTCCCTAAGCAGTAGTGAAGTAGGTCAAAGATTACAGATTCTGTCACCCTAAACAGACGT
GGAGCAGATCGAAGATGATAAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTA
ATCCTATCACCCTAAGCAGTAGTGGAGTCAGTTGAAGATTGCAGATTCTGTCACCCGAACCAGAA
GTGATGCAGATCAAGGATGGTGAATCCTATCTTCCAAATACAGTGGAGAAGCAGATTTAAGCCAT
TAATCCTATCACCCTAAGCAGTAGTGGCGCAGATCCAAGATGGTGAATCTTATGTTCCCAATAGA
GTGCAGAAGCAGATTTAAGTCATTAGTCCTA
Found at i:6215 original size:352 final size:352
Alignment explanation
Indices: 5559--6283 Score: 1024
Period size: 352 Copynumber: 2.1 Consensus size: 352
5549 GCAGATTCTG
* *
5559 TCACCCTAAGCAGTAGTGGAGTAGATCGAAGATGGTGAATCTTAGCTTCCCAATACAGTAGAGAA
1 TCACCCTAAGCAGTAGTGGAGCAGATCCAAGATGGTGAATCTTAGCTTCCCAATACAGTAGAGAA
* * * *
5624 GCAGATTTAAGACATTAGACCTATCTCCCTAAGGAGTAGTGAAGTAGGTTGAAGATTATAGATTC
66 GCAGATTTAAGACATTAGACCTATCACCCTAAGCAGTAATGAAGTAGGTTGAAGATTACAGATTC
*
5689 TGTCACCCTAAACAGTAGTTGAGCAGATCGAATATGATAAATCTTATCTTCCCAATACAGTGGAG
131 TGTCACCCTAAACAGTAGTTGAGCAGATCGAAGATGATAAATCTTATCTTCCCAATACAGTGGAG
* * * * *
5754 AAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTGGTGGAGTAGGTTGAAGATTGCTGAT
196 AAACAAATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGCGGAGTAGGTTGAAGATTGCAGAT
* * *
5819 TCTGTCACCCGAAGCAGTAGTGGAGCAGATCCAAGATTGTGAATCCTATCTTGCAAATACAGTGG
261 TCTGTCACCCGAAGCAGTAGTGGAGCAGATCCAAGATGGTGAATCCTATCTTCCAAATACACTGG
*
5884 AGAAGCAGATTTAAGCCATTAATCCTA
326 AGAAGCAGATTTAAGCCATTAATCCCA
* *
5911 TCACCCTAAGCAGTAGTGGCGCAGATCCAAGATGGTGAATCTTATG-TTCCCAATAGAGT-GCAG
1 TCACCCTAAGCAGTAGTGGAGCAGATCCAAGATGGTGAATCTTA-GCTTCCCAATACAGTAG-AG
* * * *
5974 AAGCAGATTTAAGTCATTAGTCCTATCACCCTAAGCAGTAATGGAGTAGGTTGAAGATTGCAGAT
64 AAGCAGATTTAAGACATTAGACCTATCACCCTAAGCAGTAATGAAGTAGGTTGAAGATTACAGAT
* * * * * * *
6039 TCTGTCACCCTCAGCAGTAG-TGCAGCGGATTGAAGATGGTGAATCTTATCTTCCCAATATAGTG
129 TCTGTCACCCTAAACAGTAGTTG-AGCAGATCGAAGATGATAAATCTTATCTTCCCAATACAGTG
* * *
6103 GAGAAACAAATTTAAGCCATTAGTCCTATCATCGTAAGCAGTAGCGGAGTCGGTTGAAGATTGCA
193 GAGAAACAAATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGCGGAGTAGGTTGAAGATTGCA
* * * * * *
6168 GATTCTGTCACCCTAAGCATTAGTGGAGTAGATCGAAGATGGTGAATCTTATCTTCCCAATACAC
258 GATTCTGTCACCCGAAGCAGTAGTGGAGCAGATCCAAGATGGTGAATCCTATCTTCCAAATACAC
* *
6233 TGGAGAAGTAGATTTAAGCCATTAGTCCCA
323 TGGAGAAGCAGATTTAAGCCATTAATCCCA
* *
6263 TCTCCCTGAGCAGTAGTGGAG
1 TCACCCTAAGCAGTAGTGGAG
6284 TAGGTCAAAT
Statistics
Matches: 327, Mismatches: 43, Indels: 6
0.87 0.11 0.02
Matches are distributed among these distances:
351 3 0.01
352 323 0.99
353 1 0.00
ACGTcount: A:0.31, C:0.19, G:0.23, T:0.27
Consensus pattern (352 bp):
TCACCCTAAGCAGTAGTGGAGCAGATCCAAGATGGTGAATCTTAGCTTCCCAATACAGTAGAGAA
GCAGATTTAAGACATTAGACCTATCACCCTAAGCAGTAATGAAGTAGGTTGAAGATTACAGATTC
TGTCACCCTAAACAGTAGTTGAGCAGATCGAAGATGATAAATCTTATCTTCCCAATACAGTGGAG
AAACAAATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGCGGAGTAGGTTGAAGATTGCAGAT
TCTGTCACCCGAAGCAGTAGTGGAGCAGATCCAAGATGGTGAATCCTATCTTCCAAATACACTGG
AGAAGCAGATTTAAGCCATTAATCCCA
Found at i:7537 original size:132 final size:132
Alignment explanation
Indices: 4459--7525 Score: 2655
Period size: 132 Copynumber: 23.2 Consensus size: 132
4449 ATTAATCATA
* * * * * *
4459 TCACCCTAAACTGTAGTGGCGTAGATCGAAGATGGTGAATCTTATGTTCCCAATAGAGT-GCAGA
1 TCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTAG-AGA
* * *
4523 AGCAGATTTAAGTCATTAGTCCTATCACCCTAAGCAGTAATGGAGTAGGTTGAAGATTGCAGATT
65 AGCAGATTTAAGCCATTAGTCCTATCTCCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATT
4588 CTG
130 CTG
* * * * *
4591 TCACCCTAAGCAGTAGTGCAGCGGATCGAAGATGGTGAATCTTATTTTCCGAATACAGTGGAGAA
1 TCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTAGAGAA
* *
4656 ACAAATTTAAGCCATTAGTCCTATCAT-CCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATT
66 GCAGATTTAAGCCATTAGTCCTATC-TCCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATT
4720 CTG
130 CTG
* * * *
4723 TCACCCTAAGCAATCGTGGAGTAGATCGAAGATGGTGAATCTGATCTTCCCAATACAGTAGAGAA
1 TCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTAGAGAA
* * ** * *
4788 GTAGATTTGAGCCATTACACCTATCTCCCAAAGCAGTAGTGGAGTAGGTTGAAGATTACAGATTC
66 GCAGATTTAAGCCATTAGTCCTATCTCCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTC
4853 TG
131 TG
* * * * *
4855 TCACCCTAAACAGTAGTGGAGCATATCAAATATGATGAATCTTATCTTCCCAATACAGTAGAGAA
1 TCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTAGAGAA
* * ** * * *
4920 GTAGATTTGAGCCATTACACCTATCTCCCAAAGCAGTAGTGGAGTAGATTGAAGATTACAGATTC
66 GCAGATTTAAGCCATTAGTCCTATCTCCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTC
4985 TG
131 TG
* * * * *
4987 TCACCCTAAACAGTAGTGGAGCATATCAAATATGATGAATCTTATCTTCCCAATACAGTAGAGAA
1 TCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTAGAGAA
* * ** * * *
5052 GTAGATTTGAGCCATTACACCTATCTCCCAAAGCAGTAGTGGAGTAGATTGAAGATTACAGATTC
66 GCAGATTTAAGCCATTAGTCCTATCTCCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTC
5117 TG
131 TG
* * * * *
5119 TCACCCTAAACAGTAGTGGAGCATATCAAATATGATGAATCTTATCTTCCCAATACAGTAGAGAA
1 TCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTAGAGAA
* * ** * * *
5184 GTAGATTTGAGCCATTACACCTATCTCCCAAAGCAGTAGTGGAGTAGATTGAAGATTACAGATTC
66 GCAGATTTAAGCCATTAGTCCTATCTCCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTC
5249 TG
131 TG
* * * * *
5251 TCACCCTAAACAGTAGTGGAGCATATCAAATATGATGAATCTTATCTTCCCAATACAGTAGAGAA
1 TCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTAGAGAA
* * ** *
5316 GTAGATTTGAGCCATTACACCTATCTCCCAAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTC
66 GCAGATTTAAGCCATTAGTCCTATCTCCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTC
5381 TG
131 TG
* * * ** * * * * *
5383 TCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTC-TGTC-ACCCTAA-GCAGTAGTG
1 TCACCCTAAGCAGTAGTGGAGCAGATCGAAGA-TGGTGAATCTTATCTTCCC-AATACAGTAGAG
* ** ** * * * * * * *** * * *
5445 GAGCAGATCGAAGATGATAATTCTTATTTTCCC-AATACAGTGGAAAAGAAGATTTAAGCCATT-
64 AAGCAGATTTAAG-CCATTAGTCCTA-TCTCCCTAA-GCAGTAGTGGAGTAGGTTGAAG--ATTG
* *
5508 -AG-TCCTA
124 CAGATTCTG
* * ** * * ** * * * * *
5515 TCTCCCTAAGCAGTAGTCGAATAGGTTGAAGATTGCAGATTC-TGTC-ACCCTAA-GCAGTAGTG
1 TCACCCTAAGCAGTAGTGGAGCAGATCGAAGA-TGGTGAATCTTATCTTCCC-AATACAGTAGAG
* * ** * * * * * * * * *
5577 GAGTAGATCGAAG--ATGGTGAATCTTAGCTTCCC-AATACAGTAGAGAAGCAGATTTAAGACAT
64 AAGCAGATTTAAGCCAT--T-AGTCCTATC-TCCCTAA-GCAGTAGTGGAGTAGGTTGAAG--AT
* *
5639 T--AGA-CCTA
122 TGCAGATTCTG
* * * * * * ** * * * *
5647 TCTCCCTAAGGAGTAGTGAAGTAGGTTGAAGATTATAGATTC-TGTC-ACCCTAA-ACAGTAGTT
1 TCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGT-GAATCTTATCTTCCC-AATACAGTAG-A
** *** * * * * * * * * * *
5709 G-AGCAGATCGAATATGATAAATCTTATCTTCCC-AATACAGTGGAGAAGCAGATTTAAGCCATT
63 GAAGCAGATTTAA-GCCATTAGTCCTATC-TCCCTAA-GCAGTAGTGGAGTAGGTTGAAG--ATT
* *
5772 --AG-TCCTA
123 GCAGATTCTG
* * * * * * * * * *
5779 TCACCCTAAGCAGTGGTGGAGTAGGTTGAAGATTGCTGATTC-TGTC-ACCCGAA-GCAGTAGTG
1 TCACCCTAAGCAGTAGTGGAGCAGATCGAAGA-TGGTGAATCTTATCTTCCC-AATACAGTAGAG
* ** * ** * * * * * * * *
5841 GAGCAGATCCAAG--ATTGTGAATCCTATCTTGCAAATACAGTGGAGAAGCAGATTTAAGCCATT
64 AAGCAGATTTAAGCCA-T-T-AGTCCTATCTCCCTAA-GCAGTAGTGGAGTAGGTTGAAG--ATT
* *
5904 --A-ATCCTA
123 GCAGATTCTG
* * * *
5911 TCACCCTAAGCAGTAGTGGCGCAGATCCAAGATGGTGAATCTTATGTTCCCAATAGAGT-GCAGA
1 TCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTAG-AGA
* * *
5975 AGCAGATTTAAGTCATTAGTCCTATCACCCTAAGCAGTAATGGAGTAGGTTGAAGATTGCAGATT
65 AGCAGATTTAAGCCATTAGTCCTATCTCCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATT
6040 CTG
130 CTG
* * * * * *
6043 TCACCCTCAGCAGTAGTGCAGCGGATTGAAGATGGTGAATCTTATCTTCCCAATATAGTGGAGAA
1 TCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTAGAGAA
* * * * *
6108 ACAAATTTAAGCCATTAGTCCTATCAT-CGTAAGCAGTAGCGGAGTCGGTTGAAGATTGCAGATT
66 GCAGATTTAAGCCATTAGTCCTATC-TCCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATT
6172 CTG
130 CTG
* * * *
6175 TCACCCTAAGCATTAGTGGAGTAGATCGAAGATGGTGAATCTTATCTTCCCAATACACTGGAGAA
1 TCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTAGAGAA
* * * ** * *
6240 GTAGATTTAAGCCATTAGTCCCATCTCCCTGAGCAGTAGTGGAGTAGGTCAAATATTGCAGATTT
66 GCAGATTTAAGCCATTAGTCCTATCTCCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTC
6305 TG
131 TG
*
6307 TCACCCTGAA-CAG-ACGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAG
1 TCACCCT-AAGCAGTA-GTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTAGAG
* * *
6370 AAGCAGATTTAAGCCATTAATCCTATCACCCTAAGCAGTAGTGGAGTCA-GTTGAGGATTGCAGA
64 AAGCAGATTTAAGCCATTAGTCCTATCTCCCTAAGCAGTAGTGGAGT-AGGTTGAAGATTGCAGA
6434 TTCTG
128 TTCTG
* * * * *
6439 TCACCCTAACCAGAAGT-GATGCAGATC-AAGGATGGTGAATCTTGTCTTCCCAATATAGTGGAG
1 TCACCCTAAGCAGTAGTGGA-GCAGATCGAA-GATGGTGAATCTTATCTTCCCAATACAGTAGAG
* * *
6502 AAGTAGATTTAAGCCATTCGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGAT
64 AAGCAGATTTAAGCCATTAGTCCTATCTCCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGAT
6567 TCTG
129 TCTG
* *
6571 TCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCGCAATACAGTGGAGAA
1 TCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTAGAGAA
* * * *
6636 GCATATTTCAGTCATTAGTCCTAT-TATCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATT
66 GCAGATTTAAGCCATTAGTCCTATCT-CCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATT
*
6700 CCG
130 CTG
* * * * *
6703 TCACCCTAAGCAATATTGGAGTAGATCGAAGATGGTGAATCTTATCTTGCCAATACAGTGGAGAA
1 TCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTAGAGAA
* * * ** * *
6768 GTAGATTTAAGCCTTTAGTCCTATCTCCCTGAGCAGTAGTGGAGTAGGTCAAATATTGCAGATTT
66 GCAGATTTAAGCCATTAGTCCTATCTCCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTC
6833 TG
131 TG
* * * ** * * *
6835 TCACCCTAAGTAGTAGTGGAGTAGATCGAAGATGGTGAA---TAT-TACAGATTGCAGATTGCAG
1 TCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAG-TAG-AG
** * * * * * * *
6896 ATTCTGTCATCCTAAGCTATTAGTCCTATCACCCTAAGCAGTACTTGAATAGGTTGAAGATTGCA
64 AAGCAG--AT-TTAAGCCATTAGTCCTATCTCCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCA
6961 GATTCTG
126 GATTCTG
** * * * *
6968 TCACCCTAAGCAACAGTGGAAG-AGATCAAAAATCGTGAATCTTATCTTCCCAATACAGTGGAGA
1 TCACCCTAAGCAGTAGTGG-AGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTAGAGA
* * *
7032 AGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGGAGTGGAGTGGGTTGAAGATTGCAGATT
65 AGCAGATTTAAGCCATTAGTCCTATCTCCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATT
*
7097 CTA
130 CTG
* * * * ** * * * *
7100 TCGCCCTAAGCAGTAGAGGAGCGGATCGAAGATGGTGAATCATATCTTCTGAAAATAGTGGAGCA
1 TCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTAGAGAA
* * * *
7165 GCAGATGTAAGCCATTAGTCCAATCTACCTAAGCAGTAGTGGAGTAGGTTGAAGATTACAGATTC
66 GCAGATTTAAGCCATTAGTCCTATCTCCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTC
7230 TG
131 TG
* * * * *
7232 TCACCTTAAACAGTAGTGGAGTAGATCGAATATGGTGAATCTTAACTTCCCAATACAGTAGAGAA
1 TCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTAGAGAA
* * * *
7297 GCAGATTTAAGCCATTAGTCCTATCTCCCTCAGCAGTAGTCGAATAGGTTGAAGATTGCAGATTT
66 GCAGATTTAAGCCATTAGTCCTATCTCCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTC
7362 TG
131 TG
* * *
7364 TCACCCTAAGCAGTAGTGGAGTAGATCGAATATGGTGAATCTTAACTTCCCAATACAGTAGAGAA
1 TCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTAGAGAA
* * **
7429 GCAGATTTAAGCCATTAGACCTATCTCCCTAAGGAGTAGTGGAGTAGGTTGAAGATTATAGATTC
66 GCAGATTTAAGCCATTAGTCCTATCTCCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTC
7494 TG
131 TG
*
7496 TCACCCTAAACAGTAGTGGAGCAGATCGAA
1 TCACCCTAAGCAGTAGTGGAGCAGATCGAA
7526 TATGATAAAT
Statistics
Matches: 2530, Mismatches: 342, Indels: 126
0.84 0.11 0.04
Matches are distributed among these distances:
128 6 0.00
129 11 0.00
130 5 0.00
131 57 0.02
132 2284 0.90
133 141 0.06
134 3 0.00
135 11 0.00
136 5 0.00
137 7 0.00
ACGTcount: A:0.32, C:0.18, G:0.23, T:0.27
Consensus pattern (132 bp):
TCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTAGAGAA
GCAGATTTAAGCCATTAGTCCTATCTCCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTC
TG
Found at i:7920 original size:44 final size:45
Alignment explanation
Indices: 7843--8668 Score: 183
Period size: 44 Copynumber: 18.8 Consensus size: 45
7833 CCATTAGTCC
* * * *
7843 TATCACCCTAAGGAATAGTGGAGTAGGTTGAAGATTGCAGATTC-
1 TATCACCCTAAGCAGTAGTGGAGCAGATTGAAGATTGCAGATTCT
* * ** *
7887 TGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGA-TGGTGAATCT
1 TATCACCCTAAGCAGTAGTGGAGCAGATTGAAGATTGCAGATTCT
* * * * *
7931 TATCTTCCC-AATACAGTAGAGAAGCAGATTTAAGCCATT--AG--TCT
1 TATC-ACCCTAA-GCAGTAGTGGAGCAGATTGAAG--ATTGCAGATTCT
* * * *
7975 TATCACCCAAAGTAGTAGTGGAGTAGGTTGAAGATTGCAGATTC-
1 TATCACCCTAAGCAGTAGTGGAGCAGATTGAAGATTGCAGATTCT
* * * *
8019 TGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATTG-TGAATCT
1 TATCACCCTAAGCAGTAGTGGAGCAGATTGAAGATTGCAGATTCT
** * ** * * *
8063 TATC-TTCGAAATA-AAGTGAAGAAGCAGATT-TAGCCATT--AG--TCC
1 TATCACCCTAAGCAGTAGTG--G-AGCAGATTGAAG--ATTGCAGATTCT
8106 TATCACCCTAAGCAGTAGTGGAGTCAG-TTGAAGATTGCAGATTC-
1 TATCACCCTAAGCAGTAGTGGAG-CAGATTGAAGATTGCAGATTCT
* * * ** *
8150 TGTCACCCTAACCAGTAGT-GATGCAGATCGAAGA-TGGTGAATCT
1 TATCACCCTAAGCAGTAGTGGA-GCAGATTGAAGATTGCAGATTCT
* ** * * * *** * *
8194 TGTCTTCCAAATACAGTGGACAAGCAGATTTAAGCCATT--AG--TCC
1 TATCACCCTAA-GCAGTAGTGGAGCAGATTGAAG--ATTGCAGATTCT
* * * *
8238 TATCACCCTAAGCAGTGGTGGAGTAGGTTGAAGATTACAGATTC-
1 TATCACCCTAAGCAGTAGTGGAGCAGATTGAAGATTGCAGATTCT
* * * * ** * *
8282 TGTCACCCTAAGCAATAGTGGAGGAGATCGAAGA-TGGTGACTGT
1 TATCACCCTAAGCAGTAGTGGAGCAGATTGAAGATTGCAGATTCT
* * * * * * * *
8326 TATCTTCCCAAAACAGTGGAGAAGCAGATTTAAGCCATT--AGA--CC
1 TATC-ACCCTAAGCAGTAGTGGAGCAGATTGAAG--ATTGCAGATTCT
* * * **
8370 TATCACCCTAAGCAGTGGTGGAGTAGGTTGAAGATTGTTGATTC-
1 TATCACCCTAAGCAGTAGTGGAGCAGATTGAAGATTGCAGATTCT
* * * * *
8414 TCTCAACCTAAGCAGTAGTGGAGCAGATCGAAGATTG-TGAATCT
1 TATCACCCTAAGCAGTAGTGGAGCAGATTGAAGATTGCAGATTCT
*** * * * * * * *
8458 TATCTTGCAAATACAGTGGAGAAGCAGATTTAAGCCATT--A-A-TCC
1 TATCACCCTAA-GCAGTAGTGGAGCAGATTGAAG--ATTGCAGATTCT
* ** *
8502 TATCACCCTAAGCAGTAGTGGAGCAGATCGAAGA-TGGTGAATCT
1 TATCACCCTAAGCAGTAGTGGAGCAGATTGAAGATTGCAGATTCT
** * * * * * *
8546 TATGTTCCCAATAG-AGTTGAGAAGCAGATTTAAGTCATT--AG--TCC
1 TAT-CACCCTA-AGCAGTAGTGGAGCAGATTGAAG--ATTGCAGATTCT
* *
8590 TATCACCCTAAGCAGTAGTGGAGAAGGTTGAAGATTGCAGATTC-
1 TATCACCCTAAGCAGTAGTGGAGCAGATTGAAGATTGCAGATTCT
* * *
8634 TGTCACCCTAACCAGTAGT-GATGCAGATCGAAGAT
1 TATCACCCTAAGCAGTAGTGGA-GCAGATTGAAGAT
8669 GGTGAAGCTT
Statistics
Matches: 548, Mismatches: 169, Indels: 130
0.65 0.20 0.15
Matches are distributed among these distances:
40 1 0.00
41 16 0.03
42 10 0.02
43 147 0.27
44 242 0.44
45 110 0.20
46 11 0.02
47 7 0.01
48 4 0.01
ACGTcount: A:0.32, C:0.18, G:0.24, T:0.26
Consensus pattern (45 bp):
TATCACCCTAAGCAGTAGTGGAGCAGATTGAAGATTGCAGATTCT
Found at i:8225 original size:263 final size:264
Alignment explanation
Indices: 7777--8524 Score: 1144
Period size: 263 Copynumber: 2.8 Consensus size: 264
7767 CCAGTAGTAT
* * * *
7777 GCAGATCGAAGATGGCGAACCTTATCTTCCCAATACAGTGGAGAAGCATATTTAAGCCATTAGTC
1 GCAGATCGAAGATGGTGAATCTTATCTTCCAAATACAGTGGAGAAGCAGATTTAAGCCATTAGTC
* *
7842 CTATCACCCTAAGGAATAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTG
66 CTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTG
* *
7907 GAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTAGAGAAGCAGATTTAAGCCATTAG
131 GAGCAGATCGAAGATGGTGAATCTTATCTTCCAAATACAGTGGAGAAGCAGATTTAAGCCATTAG
* * * * *
7972 TCTTATCACCCAAAGTAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAG
196 TCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTACAGATTCTGTCACCCTAAGCAATAG
8037 TGGA
261 TGGA
* * * *
8041 GCAGATCGAAGATTGTGAATCTTATCTTCGAAATAAAGTGAAGAAGCAGATTT-AGCCATTAGTC
1 GCAGATCGAAGATGGTGAATCTTATCTTCCAAATACAGTGGAGAAGCAGATTTAAGCCATTAGTC
*
8105 CTATCACCCTAAGCAGTAGTGGAGTCA-GTTGAAGATTGCAGATTCTGTCACCCTAACCAGTAGT
66 CTATCACCCTAAGCAGTAGTGGAGT-AGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGT
* *
8169 -GATGCAGATCGAAGATGGTGAATCTTGTCTTCCAAATACAGTGGACAAGCAGATTTAAGCCATT
130 GGA-GCAGATCGAAGATGGTGAATCTTATCTTCCAAATACAGTGGAGAAGCAGATTTAAGCCATT
*
8233 AGTCCTATCACCCTAAGCAGTGGTGGAGTAGGTTGAAGATTACAGATTCTGTCACCCTAAGCAAT
194 AGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTACAGATTCTGTCACCCTAAGCAAT
8298 AGTGGA
259 AGTGGA
* * * *
8304 GGAGATCGAAGATGGTGACTGTTATCTTCCCAAA-ACAGTGGAGAAGCAGATTTAAGCCATTAGA
1 GCAGATCGAAGATGGTGAATCTTATCTT-CCAAATACAGTGGAGAAGCAGATTTAAGCCATTAGT
* ** * *
8368 CCTATCACCCTAAGCAGTGGTGGAGTAGGTTGAAGATTGTTGATTCTCTCAACCTAAGCAGTAGT
65 CCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGT
* *
8433 GGAGCAGATCGAAGATTGTGAATCTTATCTTGCAAATACAGTGGAGAAGCAGATTTAAGCCATTA
130 GGAGCAGATCGAAGATGGTGAATCTTATCTTCCAAATACAGTGGAGAAGCAGATTTAAGCCATTA
*
8498 ATCCTATCACCCTAAGCAGTAGTGGAG
195 GTCCTATCACCCTAAGCAGTAGTGGAG
8525 CAGATCGAAG
Statistics
Matches: 437, Mismatches: 41, Indels: 12
0.89 0.08 0.02
Matches are distributed among these distances:
262 2 0.00
263 234 0.54
264 199 0.46
265 2 0.00
ACGTcount: A:0.32, C:0.18, G:0.24, T:0.26
Consensus pattern (264 bp):
GCAGATCGAAGATGGTGAATCTTATCTTCCAAATACAGTGGAGAAGCAGATTTAAGCCATTAGTC
CTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTG
GAGCAGATCGAAGATGGTGAATCTTATCTTCCAAATACAGTGGAGAAGCAGATTTAAGCCATTAG
TCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTACAGATTCTGTCACCCTAAGCAATAG
TGGA
Found at i:8249 original size:395 final size:396
Alignment explanation
Indices: 7757--8524 Score: 1245
Period size: 395 Copynumber: 1.9 Consensus size: 396
7747 NNNNNNNNNN
* *
7757 TCACCCTAAACCAGTAGTATGCAGATCGAAGATGGCGAACCTTATCTTCCCAATACAGTGGAGAA
1 TCACCCTAAACCAGTAGTATGCAGATCGAAGATGGCGAACCTTATCTTCCAAATACAGTGGACAA
* * *
7822 GCATATTTAAGCCATTAGTCCTATCACCCTAAGGAATAGTGGAGTAGGTTGAAGATTGCAGATTC
66 GCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAATAGTGGAGTAGGTTGAAGATTACAGATTC
* *
7887 TGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTAGAG
131 TGTCACCCTAAGCAATAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAAAACAGTAGAG
* * *
7952 AAGCAGATTTAAGCCATTAGTCTTATCACCCAAAGTAGTAGTGGAGTAGGTTGAAGATTGCAGAT
196 AAGCAGATTTAAGCCATTAGACCTATCACCCAAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGAT
* *
8017 TCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATTGTGAATCTTATCTT-CGAAATAAAGTG
261 TCTCTCAACCTAAGCAGTAGTGGAGCAGATCGAAGATTGTGAATCTTATCTTGC-AAATAAAGTG
*
8081 AAGAAGCAGATTT-AGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTCAGTTGAAGATTGCA
325 AAGAAGCAGATTTAAGCCATTAATCCTATCACCCTAAGCAGTAGTGGAGTCAGTTGAAGATTGCA
8145 GATTCTG
390 GATTCTG
* * *
8152 TCACCCT-AACCAGTAGTGATGCAGATCGAAGATGGTGAATCTTGTCTTCCAAATACAGTGGACA
1 TCACCCTAAACCAGTAGT-ATGCAGATCGAAGATGGCGAACCTTATCTTCCAAATACAGTGGACA
* *
8216 AGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTGGTGGAGTAGGTTGAAGATTACAGATT
65 AGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAATAGTGGAGTAGGTTGAAGATTACAGATT
* * * *
8281 CTGTCACCCTAAGCAATAGTGGAGGAGATCGAAGATGGTGACTGTTATCTTCCCAAAACAGTGGA
130 CTGTCACCCTAAGCAATAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAAAACAGTAGA
* * **
8346 GAAGCAGATTTAAGCCATTAGACCTATCACCCTAAGCAGTGGTGGAGTAGGTTGAAGATTGTTGA
195 GAAGCAGATTTAAGCCATTAGACCTATCACCCAAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGA
*
8411 TTCTCTCAACCTAAGCAGTAGTGGAGCAGATCGAAGATTGTGAATCTTATCTTGCAAATACAGTG
260 TTCTCTCAACCTAAGCAGTAGTGGAGCAGATCGAAGATTGTGAATCTTATCTTGCAAATAAAGTG
*
8476 GAGAAGCAGATTTAAGCCATTAATCCTATCACCCTAAGCAGTAGTGGAG
325 AAGAAGCAGATTTAAGCCATTAATCCTATCACCCTAAGCAGTAGTGGAG
8525 CAGATCGAAG
Statistics
Matches: 342, Mismatches: 28, Indels: 5
0.91 0.07 0.01
Matches are distributed among these distances:
394 10 0.03
395 297 0.87
396 35 0.10
ACGTcount: A:0.32, C:0.19, G:0.24, T:0.26
Consensus pattern (396 bp):
TCACCCTAAACCAGTAGTATGCAGATCGAAGATGGCGAACCTTATCTTCCAAATACAGTGGACAA
GCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAATAGTGGAGTAGGTTGAAGATTACAGATTC
TGTCACCCTAAGCAATAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAAAACAGTAGAG
AAGCAGATTTAAGCCATTAGACCTATCACCCAAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGAT
TCTCTCAACCTAAGCAGTAGTGGAGCAGATCGAAGATTGTGAATCTTATCTTGCAAATAAAGTGA
AGAAGCAGATTTAAGCCATTAATCCTATCACCCTAAGCAGTAGTGGAGTCAGTTGAAGATTGCAG
ATTCTG
Found at i:8514 original size:88 final size:88
Alignment explanation
Indices: 8420--8626 Score: 315
Period size: 88 Copynumber: 2.4 Consensus size: 88
8410 ATTCTCTCAA
*
8420 CCTAAGCAGTAGTGGAGCAGATCGAAGATTGTGAATCTTATCTTGCAAATACAGTGGAGAAGCAG
1 CCTAAGCAGTAGTGGAGCAGATCGAAGATTGTGAATCTTATCTTCCAAATACAGTGGAGAAGCAG
8485 ATTTAAGCCATTAATCCTATCAC
66 ATTTAAGCCATTAATCCTATCAC
* * * * *
8508 CCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATGTTCCCAATAGAGTTGAGAAGCAG
1 CCTAAGCAGTAGTGGAGCAGATCGAAGATTGTGAATCTTATCTTCCAAATACAGTGGAGAAGCAG
* *
8573 ATTTAAGTCATTAGTCCTATCAC
66 ATTTAAGCCATTAATCCTATCAC
* * *
8596 CCTAAGCAGTAGTGGAGAAGGTTGAAGATTG
1 CCTAAGCAGTAGTGGAGCAGATCGAAGATTG
8627 CAGATTCTGT
Statistics
Matches: 107, Mismatches: 12, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
88 107 1.00
ACGTcount: A:0.33, C:0.16, G:0.25, T:0.26
Consensus pattern (88 bp):
CCTAAGCAGTAGTGGAGCAGATCGAAGATTGTGAATCTTATCTTCCAAATACAGTGGAGAAGCAG
ATTTAAGCCATTAATCCTATCAC
Found at i:8529 original size:43 final size:42
Alignment explanation
Indices: 8480--8612 Score: 99
Period size: 43 Copynumber: 3.0 Consensus size: 42
8470 ACAGTGGAGA
8480 AGCAGATTTAAGCCATTAATCCTATCACCCTAAGCAGTAGTGG
1 AGCAGATTTAAG-CATTAATCCTATCACCCTAAGCAGTAGTGG
** * ** * * * *
8523 AGCAGATCGAAG-ATGGTGAATCTTATGTTCCCAATAG-AGTTGAGA
1 AGCAGATTTAAGCAT--T-AATCCTAT-CACCCTA-AGCAGTAGTGG
*
8568 AGCAGATTTAAGTCATTAGTCCTATCACCCTAAGCAGTAGTGG
1 AGCAGATTTAAG-CATTAATCCTATCACCCTAAGCAGTAGTGG
8611 AG
1 AG
8613 AAGGTTGAAG
Statistics
Matches: 63, Mismatches: 19, Indels: 16
0.64 0.19 0.16
Matches are distributed among these distances:
41 2 0.03
42 2 0.03
43 22 0.35
44 13 0.21
45 20 0.32
46 2 0.03
47 2 0.03
ACGTcount: A:0.32, C:0.19, G:0.23, T:0.26
Consensus pattern (42 bp):
AGCAGATTTAAGCATTAATCCTATCACCCTAAGCAGTAGTGG
Found at i:8536 original size:132 final size:132
Alignment explanation
Indices: 7777--8524 Score: 1144
Period size: 132 Copynumber: 5.7 Consensus size: 132
7767 CCAGTAGTAT
* * * *
7777 GCAGATCGAAGATGGCGAACCTTATCTTCCCAATACAGTGGAGAAGCATATTTAAGCCATTAGTC
1 GCAGATCGAAGATGGTGAATCTTATCTTCCAAATACAGTGGAGAAGCAGATTTAAGCCATTAGTC
* *
7842 CTATCACCCTAAGGAATAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTG
66 CTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTG
7907 GA
131 GA
* *
7909 GCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTAGAGAAGCAGATTTAAGCCATTAGTC
1 GCAGATCGAAGATGGTGAATCTTATCTTCCAAATACAGTGGAGAAGCAGATTTAAGCCATTAGTC
* * *
7974 TTATCACCCAAAGTAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTG
66 CTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTG
8039 GA
131 GA
* * * *
8041 GCAGATCGAAGATTGTGAATCTTATCTTCGAAATAAAGTGAAGAAGCAGATTT-AGCCATTAGTC
1 GCAGATCGAAGATGGTGAATCTTATCTTCCAAATACAGTGGAGAAGCAGATTTAAGCCATTAGTC
*
8105 CTATCACCCTAAGCAGTAGTGGAGTCA-GTTGAAGATTGCAGATTCTGTCACCCTAACCAGTAGT
66 CTATCACCCTAAGCAGTAGTGGAGT-AGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGT
8169 -GA
130 GGA
* *
8171 TGCAGATCGAAGATGGTGAATCTTGTCTTCCAAATACAGTGGACAAGCAGATTTAAGCCATTAGT
1 -GCAGATCGAAGATGGTGAATCTTATCTTCCAAATACAGTGGAGAAGCAGATTTAAGCCATTAGT
* * *
8236 CCTATCACCCTAAGCAGTGGTGGAGTAGGTTGAAGATTACAGATTCTGTCACCCTAAGCAATAGT
65 CCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGT
8301 GGA
130 GGA
* * * *
8304 GGAGATCGAAGATGGTGACTGTTATCTTCCCAAA-ACAGTGGAGAAGCAGATTTAAGCCATTAGA
1 GCAGATCGAAGATGGTGAATCTTATCTT-CCAAATACAGTGGAGAAGCAGATTTAAGCCATTAGT
* ** * *
8368 CCTATCACCCTAAGCAGTGGTGGAGTAGGTTGAAGATTGTTGATTCTCTCAACCTAAGCAGTAGT
65 CCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGT
8433 GGA
130 GGA
* * *
8436 GCAGATCGAAGATTGTGAATCTTATCTTGCAAATACAGTGGAGAAGCAGATTTAAGCCATTAATC
1 GCAGATCGAAGATGGTGAATCTTATCTTCCAAATACAGTGGAGAAGCAGATTTAAGCCATTAGTC
8501 CTATCACCCTAAGCAGTAGTGGAG
66 CTATCACCCTAAGCAGTAGTGGAG
8525 CAGATCGAAG
Statistics
Matches: 561, Mismatches: 48, Indels: 14
0.90 0.08 0.02
Matches are distributed among these distances:
130 2 0.00
131 121 0.22
132 431 0.77
133 7 0.01
ACGTcount: A:0.32, C:0.18, G:0.24, T:0.26
Consensus pattern (132 bp):
GCAGATCGAAGATGGTGAATCTTATCTTCCAAATACAGTGGAGAAGCAGATTTAAGCCATTAGTC
CTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTG
GA
Found at i:8556 original size:220 final size:220
Alignment explanation
Indices: 8284--8743 Score: 679
Period size: 220 Copynumber: 2.1 Consensus size: 220
8274 ACAGATTCTG
* * * *
8284 TCACCCTAAGCAATAGTGGAGGAGATCGAAGATGGTGACTGTTATCTTCCCAAAACAGTGGAGAA
1 TCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAAAACAGTGGAGAA
* * **
8349 GCAGATTTAAGCCATTAGACCTATCACCCTAAGCAGTGGTGGAGTAGGTTGAAGATTGTTGATTC
66 GCAGATTTAAGCCATTAGACCTATCACCCTAAGCAGTAGTGGAGAAGGTTGAAGATTGCAGATTC
* * * **
8414 TCTCAACCTAAGCAGTAGTGGA-GCAGATCGAAGATTGTGAATCTTATCTTGCAAATACAGTGGA
131 TCTCAACCTAACCAGTAGT-GATGCAGATCGAAGATGGTGAAGCTTATCTACCAAATACAGTGGA
8478 GAAGCAGATTTAAGCCATTAATCCTA
195 GAAGCAGATTTAAGCCATTAATCCTA
* * * *
8504 TCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATGTTCCCAATAGAGTTGAGAA
1 TCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAAAACAGTGGAGAA
* *
8569 GCAGATTTAAGTCATTAGTCCTATCACCCTAAGCAGTAGTGGAGAAGGTTGAAGATTGCAGATTC
66 GCAGATTTAAGCCATTAGACCTATCACCCTAAGCAGTAGTGGAGAAGGTTGAAGATTGCAGATTC
* * *
8634 TGTCACCCTAACCAGTAGTGATGCAGATCGAAGATGGTGAAGCTTATCTACCCAATACAGTGGAG
131 TCTCAACCTAACCAGTAGTGATGCAGATCGAAGATGGTGAAGCTTATCTACCAAATACAGTGGAG
*
8699 AAGCAGATTTAAGCCATTAGTCCTA
196 AAGCAGATTTAAGCCATTAATCCTA
* *
8724 TCATCCTAAGTAGTAGTGGA
1 TCACCCTAAGCAGTAGTGGA
8744 TTCGGTTGAA
Statistics
Matches: 214, Mismatches: 25, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
219 2 0.01
220 212 0.99
ACGTcount: A:0.32, C:0.18, G:0.24, T:0.26
Consensus pattern (220 bp):
TCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAAAACAGTGGAGAA
GCAGATTTAAGCCATTAGACCTATCACCCTAAGCAGTAGTGGAGAAGGTTGAAGATTGCAGATTC
TCTCAACCTAACCAGTAGTGATGCAGATCGAAGATGGTGAAGCTTATCTACCAAATACAGTGGAG
AAGCAGATTTAAGCCATTAATCCTA
Found at i:8578 original size:352 final size:352
Alignment explanation
Indices: 8152--8876 Score: 1055
Period size: 352 Copynumber: 2.1 Consensus size: 352
8142 GCAGATTCTG
* *
8152 TCACCCTAACCAGTAGT-GATGCAGATCGAAGATGGTGAATCTTGTCTTCCAAATACAGTGGACA
1 TCACCCTAAGCAGTAGTGGA-GCAGATCGAAGATGGTGAATCTTATCTTCCAAATACAGTGGACA
* *
8216 AGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTGGTGGAGTAGGTTGAAGATTACAGATT
65 AGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGAAGGTTGAAGATTACAGATT
* * * *
8281 CTGTCACCCTAAGCAATAGTGGA-GGAGATCGAAGATGGTGACTG-TTATCTTCCCAAAACAGTG
130 CTGTCACCCTAACCAATAGT-GATGCAGATCGAAGATGGTGA-AGCTTATCTACCCAAAACAGTG
* *
8344 GAGAAGCAGATTTAAGCCATTAGACCTATCACCCTAAGCAGTGGTGGAGTAGGTTGAAGATTGTT
193 GAGAAGCAGATTTAAGCCATTAGACCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGTA
* * *
8409 GATTCTCTCAACCTAAGCAGTAGTG-GAGCAGATCGAAGATTGTGAATCT-TATCTTGCAAATAC
258 GATTCTCTCAACCTAACCAGTAGTGAGAG-AGATCGAAGATGGTGAAT-TGTATCTTCCAAATAC
8472 AGTGGAGAAGCAGATTTAAGCCATTAATCCTA
321 AGTGGAGAAGCAGATTTAAGCCATTAATCCTA
* * * * *
8504 TCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATGTTCCCAATAGAGTTGAGAA
1 TCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCAAATACAGTGGACAA
* *
8569 GCAGATTTAAGTCATTAGTCCTATCACCCTAAGCAGTAGTGGAGAAGGTTGAAGATTGCAGATTC
66 GCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGAAGGTTGAAGATTACAGATTC
* *
8634 TGTCACCCTAACCAGTAGTGATGCAGATCGAAGATGGTGAAGCTTATCTACCCAATACAGTGGAG
131 TGTCACCCTAACCAATAGTGATGCAGATCGAAGATGGTGAAGCTTATCTACCCAAAACAGTGGAG
* * * * *
8699 AAGCAGATTTAAGCCATTAGTCCTATCATCCTAAGTAGTAGTGGATTCGGTTGAAGATTGTAGAT
196 AAGCAGATTTAAGCCATTAGACCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGTAGAT
* * * *
8764 TCTGTCACCCTAACCAGTAGTGATAGAGATCGAAGATGGTGAATTGTATCTTCCCAATACAGTGG
261 TCTCTCAACCTAACCAGTAGTGAGAGAGATCGAAGATGGTGAATTGTATCTTCCAAATACAGTGG
* * *
8829 AGAAGCAGATTTAAGTCATTAGTCGTA
326 AGAAGCAGATTTAAGCCATTAATCCTA
*
8856 TCGCCCTAAGCAGTAGTGGAG
1 TCACCCTAAGCAGTAGTGGAG
8877 TAGGTTGACG
Statistics
Matches: 333, Mismatches: 35, Indels: 10
0.88 0.09 0.03
Matches are distributed among these distances:
351 4 0.01
352 325 0.98
353 4 0.01
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.26
Consensus pattern (352 bp):
TCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCAAATACAGTGGACAA
GCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGAAGGTTGAAGATTACAGATTC
TGTCACCCTAACCAATAGTGATGCAGATCGAAGATGGTGAAGCTTATCTACCCAAAACAGTGGAG
AAGCAGATTTAAGCCATTAGACCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGTAGAT
TCTCTCAACCTAACCAGTAGTGAGAGAGATCGAAGATGGTGAATTGTATCTTCCAAATACAGTGG
AGAAGCAGATTTAAGCCATTAATCCTA
Found at i:8670 original size:484 final size:483
Alignment explanation
Indices: 8021--9008 Score: 1507
Period size: 484 Copynumber: 2.0 Consensus size: 483
8011 GCAGATTCTG
* *
8021 TCACCCTAAGCAGTAGTGGAGCAGATCGAAGATTGTGAATCTTATCTTCGAAATAAAGTGAAGAA
1 TCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCAAATAAAGTGAAGAA
*
8086 GCAGATTTAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTCAGTTGAAGATTGCAGATTCT
66 GCAGATTTAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAAGTTGAAGATTGCAGATTCT
* * *
8151 GTCACCCTAACCAGTAGTGATGCAGATCGAAGATGGTGAATCTTGTCTTCCAAATACAGTGGACA
131 GTCACCCTAACCAGTAGTGATGCAGATCGAAGATGGTGAAGCTTATCTACCAAATACAGTGGACA
*
8216 AGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTGGTGGAGTAGGTTGAAGATTACAGATT
196 AGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTACAGATT
* * *
8281 CTGTCACCCTAAGCAATAGTGGA-GGAGATCGAAGATGGTG-ACTGTTATCTTCCCAAAACAGTG
261 CTGTCACCCTAACCAATAGT-GATAGAGATCGAAGATGGTGAATTG-TATCTTCCCAAAACAGTG
* ***
8344 GAGAAGCAGATTTAAGCCATTAGACCTATCACCCTAAGCAGTGGTGGAGTAGGTTGAAGATTGTT
324 GAGAAGCAGATTTAAGCCATTAGACCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTACA
* * *
8409 GATTCTCTCAACCTAAGCAGTAGTGGAGCAGATCGAAGATTGTGAATCTTATCTTGCAAATACAG
389 GATTCTCTCAACCTAAGCAGTAGTGAAGCAGATCGAAGATGGTGAATCTTATCTTCCAAATACAG
8474 TGGAGAAGCAGATTTAAGCCATTAATCCTA
454 TGGAGAAGCAGATTTAAGCCATTAATCCTA
* * *
8504 TCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATGTTCCCAATAGAGTTG-AGA
1 TCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCAAATAAAG-TGAAGA
*
8568 AGCAGATTTAAGTCATTAGTCCTATCACCCTAAGCAGTAGTGGAG-AAGGTTGAAGATTGCAGAT
65 AGCAGATTT-AGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAA-GTTGAAGATTGCAGAT
*
8632 TCTGTCACCCTAACCAGTAGTGATGCAGATCGAAGATGGTGAAGCTTATCTACCCAATACAGTGG
128 TCTGTCACCCTAACCAGTAGTGATGCAGATCGAAGATGGTGAAGCTTATCTACCAAATACAGTGG
* * * * * **
8697 AGAAGCAGATTTAAGCCATTAGTCCTATCATCCTAAGTAGTAGTGGATTCGGTTGAAGATTGTAG
193 ACAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTACAG
* *
8762 ATTCTGTCACCCTAACCAGTAGTGATAGAGATCGAAGATGGTGAATTGTATCTTCCCAATACAGT
258 ATTCTGTCACCCTAACCAATAGTGATAGAGATCGAAGATGGTGAATTGTATCTTCCCAAAACAGT
* * * * *
8827 GGAGAAGCAGATTTAAGTCATTAGTCGTATCGCCCTAAGCAGTAGTGGAGTAGGTTGACGATTAC
323 GGAGAAGCAGATTTAAGCCATTAGACCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTAC
* * * *
8892 AGATTCTGTCACCCTAAGCAGTAGTGAAGCAGATCGAAGATGGTGAATCTTCTCTTCCCAATACA
388 AGATTCTCTCAACCTAAGCAGTAGTGAAGCAGATCGAAGATGGTGAATCTTATCTTCCAAATACA
* * *
8957 GTGGAGAAGCAGATTTAAGTCATTAGTCGTA
453 GTGGAGAAGCAGATTTAAGCCATTAATCCTA
*
8988 TCGCCCTAAGCAGTAGTGGAG
1 TCACCCTAAGCAGTAGTGGAG
9009 TAGGTTGAAG
Statistics
Matches: 456, Mismatches: 44, Indels: 9
0.90 0.09 0.02
Matches are distributed among these distances:
483 68 0.15
484 385 0.84
485 3 0.01
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.27
Consensus pattern (483 bp):
TCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCAAATAAAGTGAAGAA
GCAGATTTAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAAGTTGAAGATTGCAGATTCT
GTCACCCTAACCAGTAGTGATGCAGATCGAAGATGGTGAAGCTTATCTACCAAATACAGTGGACA
AGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTACAGATT
CTGTCACCCTAACCAATAGTGATAGAGATCGAAGATGGTGAATTGTATCTTCCCAAAACAGTGGA
GAAGCAGATTTAAGCCATTAGACCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTACAGA
TTCTCTCAACCTAAGCAGTAGTGAAGCAGATCGAAGATGGTGAATCTTATCTTCCAAATACAGTG
GAGAAGCAGATTTAAGCCATTAATCCTA
Found at i:10472 original size:132 final size:132
Alignment explanation
Indices: 8504--10458 Score: 2727
Period size: 132 Copynumber: 14.8 Consensus size: 132
8494 ATTAATCCTA
* * *
8504 TCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATGTTCCCAATAGAGTTGAGAA
1 TCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAA
* *
8569 GCAGATTTAAGTCATTAGTCCTATCACCCTAAGCAGTAGTGGAGAAGGTTGAAGATTGCAGATTC
66 GCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTC
8634 TG
131 TG
* * *
8636 TCACCCTAACCAGTAGT-GATGCAGATCGAAGATGGTGAAGCTTATCTACCCAATACAGTGGAGA
1 TCACCCTAAGCAGTAGTGGA-GCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGA
* * * * *
8700 AGCAGATTTAAGCCATTAGTCCTATCATCCTAAGTAGTAGTGGATTCGGTTGAAGATTGTAGATT
65 AGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATT
8765 CTG
130 CTG
* *
8768 TCACCCTAACCAGTAGTGATAG-AGATCGAAGATGGTGAAT-TGTATCTTCCCAATACAGTGGAG
1 TCACCCTAAGCAGTAGTG-GAGCAGATCGAAGATGGTGAATCT-TATCTTCCCAATACAGTGGAG
* * * * *
8831 AAGCAGATTTAAGTCATTAGTCGTATCGCCCTAAGCAGTAGTGGAGTAGGTTGACGATTACAGAT
64 AAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGAT
8896 TCTG
129 TCTG
* *
8900 TCACCCTAAGCAGTAGTGAAGCAGATCGAAGATGGTGAATCTTCTCTTCCCAATACAGTGGAGAA
1 TCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAA
* * *
8965 GCAGATTTAAGTCATTAGTCGTATCGCCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTC
66 GCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTC
9030 TG
131 TG
* * * * * * **
9032 TCACGCTAAGCAGTTGTGCAGCAGATCGAAGATGGTGAATCATATCTTCTCAAGATTGTGGAGAA
1 TCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAA
* * * * * * * *
9097 GCAGATGTAAGTCATTAGTTCAATCTCTCTAAGCAGTAGTGGAGTAGGTTAAAGTTTGCAGATTC
66 GCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTC
9162 TG
131 TG
* * * *
9164 TCACCCTAAGCAATAGTGGAGTAGATCGAAGATGGTGAATCTTATCTTCCCAATATAGTAGAGAA
1 TCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAA
* * * * * *
9229 GTAGCTTTAAGCCATTAGACCTATC-TCCTAAAGCAGTAGTGGAGTAGGTTGAAGATTACAGAAT
66 GCAGATTTAAGCCATTAGTCCTATCACCCT-AAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATT
9293 CTG
130 CTG
* * * * *
9296 TCACCCTAAACAGTAGTGGAGGAGATCAAATATGATGAATCTTATCTTCCCAATACAGTGGAGAA
1 TCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAA
* *
9361 GCAGATTTAAGCCATTAGTCCTATCACCCTAAGGAGTAGTGGAGAAGGTTGAAGATTGCAGATTC
66 GCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTC
9426 TG
131 TG
* ** *
9428 TCACCCTAACCAGTAGT-GATGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTAAAAA
1 TCACCCTAAGCAGTAGTGGA-GCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGA
* * * *
9492 AGAAGATTTAAGCCATTAGACCTATCACCCTTAGCAGTAGTGGAGTAGGTTGAAGATTGCAGTTT
65 AGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATT
9557 CTG
130 CTG
* ** *
9560 TCACCCTAAGTAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTAAAAAA
1 TCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAA
* * * * *
9625 GAAGATTTAAGCCCTTAGACCTATCACCCTTAGCAGTAGTGGAGTAGGTTGAAGATTGCAGTTTC
66 GCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTC
9690 TG
131 TG
* * ** *
9692 TCACCCTAAGTAGTAGTGGAGCAGATCGCAGATGGTGAATCTTATCTTCCCAATACAGTAAAAAA
1 TCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAA
* * * * *
9757 GAAGATTTAAGCCCTTAGACCTATCACCCTTAGCAGTAGTGGAGTAGGTTGAAGATTGCAGTTTC
66 GCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTC
9822 TG
131 TG
* * ** *
9824 TCACCCTAAGTAGTAGTGGAGCAGATCGCAGATGGTGAATCTTATCTTCCCAATACAGTAAAAAA
1 TCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAA
* * * * *
9889 GAAGATTTAAGCCCTTAGACCTATCACCCTTAGCAGTAGTGGAGTAGGTTGAAGATTGCAGTTTC
66 GCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTC
9954 TG
131 TG
* *
9956 TCACCCTAAGTAGTAGTGGAGCAGATCGCAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAA
1 TCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAA
*
10021 GCAGATTTAAGCCATTAGTCCTACCACCCTAAGCAGTAGTGGAGTCA-GTTGAAGATTGCAGATT
66 GCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGT-AGGTTGAAGATTGCAGATT
10085 CTG
130 CTG
* * * * *
10088 TCACTCTAACCAGTAGT-GATGCAGATCGAAGATGGTGAATCTTGTGTTCCCAATATAGTGGAGA
1 TCACCCTAAGCAGTAGTGGA-GCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGA
* * * *
10152 AGTAGATTTAAGTCATTAGTCCTATCACCCTAAGCAGTGGTGGAGTAGGTTCAAGATTGCAGATT
65 AGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATT
*
10217 TTG
130 CTG
** *
10220 TCACCCTAAGCAACAGTGGAGGAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAA
1 TCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAA
* *
10285 GCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTGGTGGAGTAGGTTGAAGATTGCTGATTC
66 GCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTC
10350 TG
131 TG
* * * * *
10352 TCACCCTAAGCAGTAGTGGAGTAGATCCAAGATTGTGAATCTTATCTTGCAAATACAGTGGAGAA
1 TCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAA
*
10417 GCAGATTTAAGCCATTAATCCTATCACCCTAAGCAGTAGTGG
66 GCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGG
10459 CGCAGATCGA
Statistics
Matches: 1660, Mismatches: 149, Indels: 28
0.90 0.08 0.02
Matches are distributed among these distances:
131 12 0.01
132 1637 0.99
133 10 0.01
134 1 0.00
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.27
Consensus pattern (132 bp):
TCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAA
GCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTC
TG
Found at i:10559 original size:88 final size:88
Alignment explanation
Indices: 10352--10560 Score: 292
Period size: 88 Copynumber: 2.4 Consensus size: 88
10342 GCTGATTCTG
* * * *
10352 TCACCCTAAGCAGTAGTGGAGTAGATCCAAGATTGTGAATCTTATCTTGCAAATACAGTGGAGAA
1 TCACCCTAAGCAGTAGTGGAGTAGATCGAAGATGGTGAATCTTATCTTCCAAATACAGTGCAGAA
10417 GCAGATTTAAGCCATTAATCCTA
66 GCAGATTTAAGCCATTAATCCTA
* * * * *
10440 TCACCCTAAGCAGTAGTGGCGCAGATCGAAGATGGTGAATCTTATGTTCCCAATAGAGTGCAGAA
1 TCACCCTAAGCAGTAGTGGAGTAGATCGAAGATGGTGAATCTTATCTTCCAAATACAGTGCAGAA
* *
10505 GCAGATTTAAGTCATTAGTCCTA
66 GCAGATTTAAGCCATTAATCCTA
* * *
10528 TCACCCGAAGCAGTAGTGGAGTAGGTTGAAGAT
1 TCACCCTAAGCAGTAGTGGAGTAGATCGAAGAT
10561 TGCAGATTCT
Statistics
Matches: 105, Mismatches: 16, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
88 105 1.00
ACGTcount: A:0.32, C:0.18, G:0.24, T:0.26
Consensus pattern (88 bp):
TCACCCTAAGCAGTAGTGGAGTAGATCGAAGATGGTGAATCTTATCTTCCAAATACAGTGCAGAA
GCAGATTTAAGCCATTAATCCTA
Found at i:10612 original size:220 final size:220
Alignment explanation
Indices: 10220--10675 Score: 660
Period size: 220 Copynumber: 2.1 Consensus size: 220
10210 GCAGATTTTG
** * *
10220 TCACCCTAAGCAACAGTGGAGGAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAA
1 TCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGCAGAA
* * *
10285 GCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTGGTGGAGTAGGTTGAAGATTGCTGATTC
66 GCAGATTTAAGCCATTAGTCCTATCACCCGAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTC
* * * * * *
10350 TGTCACCCTAAGCAGTAGTGGAGTAGATCCAAGATTGTGAATCTTATCTTGCAAATACAGTGGAG
131 TGTCACCCTAAGCAGTAATGCAGCAGATCCAAGATGGTGAATCTTATCTTCCAAATACAATGGAG
* * *
10415 AAGCAGATTTAAGCCATTAATCCTA
196 AAACAAATTTAAGCCATTAATCATA
* * *
10440 TCACCCTAAGCAGTAGTGGCGCAGATCGAAGATGGTGAATCTTATGTTCCCAATAGAGTGCAGAA
1 TCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGCAGAA
*
10505 GCAGATTTAAGTCATTAGTCCTATCACCCGAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTC
66 GCAGATTTAAGCCATTAGTCCTATCACCCGAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTC
* * * ** *
10570 TGTGACCCTCAGCAGTAATGCAGCGGATTGAAGATGGTGAATCTTATCTTCCCAATACAATGGAG
131 TGTCACCCTAAGCAGTAATGCAGCAGATCCAAGATGGTGAATCTTATCTTCCAAATACAATGGAG
*
10635 AAACAAATTTAAGCCATTAGTCATA
196 AAACAAATTTAAGCCATTAATCATA
*
10660 TCATCCTAAGCAGTAG
1 TCACCCTAAGCAGTAG
10676 CGATGTCGGT
Statistics
Matches: 208, Mismatches: 28, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
220 208 1.00
ACGTcount: A:0.32, C:0.19, G:0.23, T:0.26
Consensus pattern (220 bp):
TCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGCAGAA
GCAGATTTAAGCCATTAGTCCTATCACCCGAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTC
TGTCACCCTAAGCAGTAATGCAGCAGATCCAAGATGGTGAATCTTATCTTCCAAATACAATGGAG
AAACAAATTTAAGCCATTAATCATA
Found at i:10687 original size:132 final size:132
Alignment explanation
Indices: 10440--13703 Score: 4285
Period size: 132 Copynumber: 24.7 Consensus size: 132
10430 ATTAATCCTA
* ** * * *
10440 TCACCCTAAGCAGTAGTGGCGCAGATCGAAGATGGTGAATCTTATGTTCCCAATAGAGTGCAGAA
1 TCACCCTAACCAGTAGTGATGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAA
* * *
10505 GCAGATTTAAGTCATTAGTCCTATCACCCGAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTC
66 GCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAAGTTGAAGATTGCAGATTC
10570 TG
131 TG
* * * * * * *
10572 TGACCCTCAGCAGTAATGCA-GCGGATTGAAGATGGTGAATCTTATCTTCCCAATACAATGGAGA
1 TCACCCTAACCAGTAGTG-ATGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGA
* * * * * ** *
10636 AACAAATTTAAGCCATTAGTCATATCATCCTAAGCAGTAG-CGATGTCGGTTGAAGATTACAGAT
65 AGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGA-GTAAGTTGAAGATTGCAGAT
*
10700 TTTG
129 TCTG
* * **
10704 TTACTCTAACCAGTAGTGATGCAGATCGAAGATGGCAAATCTTATCTTCCCAATACAGTGGAGAA
1 TCACCCTAACCAGTAGTGATGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAA
* * *
10769 GCAGATTTAAGCCATTAGCCCTATCACCCTAAGCAATAGTGGAGTAGGTTGAAGATTGCAGATTC
66 GCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAAGTTGAAGATTGCAGATTC
10834 TG
131 TG
* * **
10836 TCACCCTAAGCAGTAGTGGA-GCAGATCGAATATACTGAATCTTATCTTCCCAATACAGTGGAGA
1 TCACCCTAACCAGTAGT-GATGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGA
* * * * * * ** *
10900 AGCAGATTTCAGTCGTTAGTCCTATTATCCTAAGCAGTAGTGGAGTAGGTCAAATATTGCAGATT
65 AGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAAGTTGAAGATTGCAGATT
*
10965 TTG
130 CTG
** * * ** * * *
10968 TCACCCTAAGTAGTAGTGGA-GTAGATCGAAGATGGTGAA---TAT-TACAGATTGCAGATTGCA
1 TCACCCTAACCAGTAGT-GATGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAG--TGGA
** * * * * * * *
11028 GATTCTGTCATCCTAAGCTATTAGTCCTATCACCCTAAGCAGTACTTGAATAGGTTGAAGATTGC
63 GAAGCAG--AT-TTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAAGTTGAAGATTGC
11093 AGATTCTG
125 AGATTCTG
* * * *
11101 TCACCCGAAGCAGTAGTGGA-GCAGATCGAAGATGGTGAATCTTATCTTCCCAATATAGTGGATA
1 TCACCCTAACCAGTAGT-GATGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGA
* * *
11165 AGTAGATTTCAA-CCATTAGCCCTATCACCCTAAGCAGTAGTGGAGTCAGTTGAAGATTGCAGAT
65 AGCAGATTT-AAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAAGTTGAAGATTGCAGAT
11229 TCTG
129 TCTG
* * * *
11233 TCACCCTAAGCAGTAGTGAAGTAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTAGAGAA
1 TCACCCTAACCAGTAGTGATGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAA
* * * * * **
11298 GCAGATTTAAGCCATAAGACCTATCTCCCTAAGGAGTAGTGGAGTAGGTTGAAGATTATAGATTC
66 GCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAAGTTGAAGATTGCAGATTC
11363 TG
131 TG
* * * * * *
11365 TCACCCTAAACAGTAGTG-TAGCAGATCGAATATGATAAATCTTATCTTTCCAATACAATGGAGA
1 TCACCCTAACCAGTAGTGAT-GCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGA
* * * * * *
11429 AGTAGATTTAAGCCATTAGTCTTATCACCCTAAGCAGTACTTGAATAGGTTGAAGATTGCAGATT
65 AGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAAGTTGAAGATTGCAGATT
11494 CTG
130 CTG
* ** *
11497 TTACCCTAAGTAGTAGTGGA-GCAGATCGAAGATGGTGAATCTTATCTTCCAAATACAGTGGAGA
1 TCACCCTAACCAGTAGT-GATGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGA
* * * *
11561 AGCAGATTTAAGCCATTGGTCCTATCACCCTAAGCAGGAGTGCAGTAGGTTGAAGATTGCAGATT
65 AGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAAGTTGAAGATTGCAGATT
11626 CTG
130 CTG
* ** *
11629 TTACCCTAAGTAGTAGTGGA-GCAGATCGAAGATGGTGAATCTTATCTTCCAAATACAGTGGAGA
1 TCACCCTAACCAGTAGT-GATGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGA
* * * *
11693 AGCAGATTTAAGCCATTGGTCCTATCACCCTAAGCAGGAGTGCAGTAGGTTGAAGATTGCAGATT
65 AGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAAGTTGAAGATTGCAGATT
*
11758 CTA
130 CTG
* * * * * * * * *
11761 TCGCCCTAAGCAGTAGTGGA-GCGGATCGAAGATCGTGAATCATATCTTCTCAAAATAGTGGAGC
1 TCACCCTAACCAGTAGT-GATGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGA
* * * * * * *
11825 AGCAGATGTAAGCCATTAGTCCAATCTA-CCTAAGTAGTAGTGGAGTAGGTTAAAGATTACAGTT
65 AGCAGATTTAAGCCATTAGTCCTATC-ACCCTAAGCAGTAGTGGAGTAAGTTGAAGATTGCAGAT
11889 TCTG
129 TCTG
* ** * * * *
11893 TCACCTTAAAGAGTAGTGGA-GCAGATCGAATATGATAAATCTTATCTTCCCAATACAGTGAAGA
1 TCACCCTAACCAGTAGT-GATGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGA
* *
11957 AGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTTAGTTGAAGATTGCAGATC
65 AGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAAGTTGAAGATTGCAGATT
12022 CTG
130 CTG
* * * *
12025 TCACCCTAACCAATAGTGATGCAGATCAAAGATGGTGAATCTTGTCTTCCCAATACTGTGGAGAA
1 TCACCCTAACCAGTAGTGATGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAA
* *
12090 GCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTTAGTTGAAGATTGCAGATCC
66 GCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAAGTTGAAGATTGCAGATTC
12155 TG
131 TG
* * * *
12157 TCACCCTAACCAATAGTGATGCAGATCAAAGATGGTGAATCTTGTCTTCCCAATACTGTGGAGAA
1 TCACCCTAACCAGTAGTGATGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAA
* *
12222 GCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTTAGTTGAAGATTGCAGATCC
66 GCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAAGTTGAAGATTGCAGATTC
12287 TG
131 TG
* * * *
12289 TCACCCTAACCAATAGTGATGCAGATCAAAGATGGTGAATCTTGTCTTCCCAATACTGTGGAGAA
1 TCACCCTAACCAGTAGTGATGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAA
* *
12354 GCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTTAGTTGAAGATTGCAGATCC
66 GCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAAGTTGAAGATTGCAGATTC
12419 TG
131 TG
* * * *
12421 TCACCCTAACCAATAGTGATGCAGATCAAAGATGGTGAATCTTGTCTTCCCAATACTGTGGAGAA
1 TCACCCTAACCAGTAGTGATGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAA
* *
12486 GCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTTAGTTGAAGATTGCAGATCC
66 GCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAAGTTGAAGATTGCAGATTC
12551 TG
131 TG
* * * *
12553 TCACCCTAACCAATAGTGATGCAGATCAAAGATGGTGAATCTTGTCTTCCCAATACTGTGGAGAA
1 TCACCCTAACCAGTAGTGATGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAA
* *
12618 GCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTTAGTTGAAGATTGCAGATCC
66 GCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAAGTTGAAGATTGCAGATTC
12683 TG
131 TG
* * * *
12685 TCACCCTAACCAATAGTGATGCAGATCAAAGATGGTGAATCTTGTCTTCCCAATACTGTGGAGAA
1 TCACCCTAACCAGTAGTGATGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAA
* *
12750 GCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTTAGTTGAAGATTGCAGATCC
66 GCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAAGTTGAAGATTGCAGATTC
12815 TG
131 TG
* * * *
12817 TCACCCTAACCAATAGTGATGCAGATCAAAGATGGTGAATCTTGTCTTCCCAATACTGTGGAGAA
1 TCACCCTAACCAGTAGTGATGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAA
* *
12882 GCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTTAGTTGAAGATTGCAGATCC
66 GCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAAGTTGAAGATTGCAGATTC
12947 TG
131 TG
* * * *
12949 TCACCCTAACCAATAGTGATGCAGATCAAAGATGGTGAATCTTGTCTTCCCAATACTGTGGAGAA
1 TCACCCTAACCAGTAGTGATGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAA
* *
13014 GCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTTAGTTGAAGATTGCAGATCC
66 GCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAAGTTGAAGATTGCAGATTC
13079 TG
131 TG
* * * *
13081 TCACCCTAACCAATAGTGATGCAGATCAAAGATGGTGAATCTTGTCTTCCCAATACTGTGGAGAA
1 TCACCCTAACCAGTAGTGATGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAA
* *
13146 GCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTTAGTTGAAGATTGCAGATCC
66 GCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAAGTTGAAGATTGCAGATTC
13211 TG
131 TG
* * * *
13213 TCACCCTAACCAATAGTGATGCAGATCAAAGATGGTGAATCTTGTCTTCCCAATACTGTGGAGAA
1 TCACCCTAACCAGTAGTGATGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAA
*
13278 GCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTCAGTTGAAGATTGCAGATTC
66 GCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAAGTTGAAGATTGCAGATTC
13343 TG
131 TG
* *
13345 TCACTCTAACCAGTAGTGATGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACACTGGAGAA
1 TCACCCTAACCAGTAGTGATGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAA
* * **
13410 GCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTGGTGGAGTAGGTTGAAGATTATAGATTC
66 GCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAAGTTGAAGATTGCAGATTC
13475 TG
131 TG
* * * * * * * *
13477 TTACCCTAAACAGTAGTGGA-GCTGATCGAATATGATAAATCTGATCTTCCCAATACAGTGAAGA
1 TCACCCTAACCAGTAGT-GATGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGA
** *
13541 AGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTCGGTTGAAGATTACAGATT
65 AGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAAGTTGAAGATTGCAGATT
13606 CTG
130 CTG
* * * *
13609 TCACCCTAACCCGTAGTGATGCAGATCGAAGATGGCGAATCTAATCTTCCCAAAACAGTGGAGAA
1 TCACCCTAACCAGTAGTGATGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAA
* *
13674 GAAGATTTAAGCCATTAGTCCTATCTCCCT
66 GCAGATTTAAGCCATTAGTCCTATCACCCT
13704 NNNNNNNNNN
Statistics
Matches: 2850, Mismatches: 257, Indels: 50
0.90 0.08 0.02
Matches are distributed among these distances:
128 7 0.00
129 3 0.00
130 7 0.00
131 12 0.00
132 2712 0.95
133 95 0.03
135 5 0.00
136 3 0.00
137 6 0.00
ACGTcount: A:0.31, C:0.19, G:0.22, T:0.27
Consensus pattern (132 bp):
TCACCCTAACCAGTAGTGATGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAA
GCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAAGTTGAAGATTGCAGATTC
TG
Found at i:51576 original size:132 final size:132
Alignment explanation
Indices: 51340--51943 Score: 803
Period size: 132 Copynumber: 4.7 Consensus size: 132
51330 NNNNNNNNNG
* *
51340 TAGTGGAGCAGATCGAAGATGATGAATCTTATCTTCCCAAA-ACAGTGGAGAAGTAGATTTAAGC
1 TAGTGGAGCAGATCGAAGATGGTGAATCTTATCTT-CCAAATACAGTGGAGAAGCAGATTTAAGC
* * * * *
51404 CATTAGTCC-ATTCACCTTAAGAAGTACTAGAGTAGGTTGAAGCTTGCAGATTCTGTCACCCTAA
65 CATTAGTCCTA-TCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAA
* *
51468 GGAG
129 GCAA
* *
51472 TAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCAAAATAAAGTGGAGAAGCAGATTTAAGCC
1 TAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCAAATACAGTGGAGAAGCAGATTTAAGCC
* *
51537 ATTAGTCCTATCAGCCTAAGCAGTAGTGGAGTCA-GTTGAAGATTGCAGATTCTGTCACCCTAAC
66 ATTAGTCCTATCACCCTAAGCAGTAGTGGAGT-AGGTTGAAGATTGCAGATTCTGTCACCCTAAG
51601 CAA
130 CAA
* *
51604 TAGT-GATGCAGATCGAAGATGGTGAATCTTGTCTTCCCAATACAGTGGAGAAGCAGATTTAAGC
1 TAGTGGA-GCAGATCGAAGATGGTGAATCTTATCTTCCAAATACAGTGGAGAAGCAGATTTAAGC
*
51668 CATTAGTCCTATCACCCTAAGCAGTGGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAG
65 CATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAG
51733 CAA
130 CAA
* * * *
51736 TAGTGGAGGAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAACCATATTTAAGCC
1 TAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCAAATACAGTGGAGAAGCAGATTTAAGCC
* * *
51801 ATTAGTCCTATCACCCTAAGTAGTGGTGGAGTAGGTTGAAGATTGCTGATTCTGT----C-AA-C
66 ATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGC
51860 --
131 AA
* * *
51860 --CT----CAGATCGAAGATTGTGAATCTTATCTTGCAAATACAGTGGAGAAGCAGATTTAAGCC
1 TAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCAAATACAGTGGAGAAGCAGATTTAAGCC
*
51919 ATTAATCCTATCACCCTAAGCAGTA
66 ATTAGTCCTATCACCCTAAGCAGTA
51944 CTGGCGCAGA
Statistics
Matches: 430, Mismatches: 36, Indels: 26
0.87 0.07 0.05
Matches are distributed among these distances:
118 73 0.17
122 1 0.00
126 1 0.00
127 2 0.00
128 1 0.00
131 7 0.02
132 341 0.79
133 4 0.01
ACGTcount: A:0.32, C:0.18, G:0.23, T:0.27
Consensus pattern (132 bp):
TAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCAAATACAGTGGAGAAGCAGATTTAAGCC
ATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGC
AA
Found at i:51960 original size:118 final size:118
Alignment explanation
Indices: 51745--51961 Score: 317
Period size: 118 Copynumber: 1.8 Consensus size: 118
51735 ATAGTGGAGG
* * *
51745 AGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAACCATATTTAAGCCATTAGTCCT
1 AGATCGAAGATGGTGAATCTTATCTTCCAAATACAGTGGAGAACCAGATTTAAGCCATTAATCCT
* ** * * *
51810 ATCACCCTAAGTAGTGGTGGAGTAGGTTGAAGATTGCTGATTCTGTCAACCTC
66 ATCACCCTAAGCAGTACTGGAGCAGATCGAAGATTGCTGATTCTGTCAACCTC
* * *
51863 AGATCGAAGATTGTGAATCTTATCTTGCAAATACAGTGGAGAAGCAGATTTAAGCCATTAATCCT
1 AGATCGAAGATGGTGAATCTTATCTTCCAAATACAGTGGAGAACCAGATTTAAGCCATTAATCCT
*
51928 ATCACCCTAAGCAGTACTGGCGCAGATCGAAGAT
66 ATCACCCTAAGCAGTACTGGAGCAGATCGAAGAT
51962 GGTGAATCTT
Statistics
Matches: 86, Mismatches: 13, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
118 86 1.00
ACGTcount: A:0.31, C:0.19, G:0.22, T:0.28
Consensus pattern (118 bp):
AGATCGAAGATGGTGAATCTTATCTTCCAAATACAGTGGAGAACCAGATTTAAGCCATTAATCCT
ATCACCCTAAGCAGTACTGGAGCAGATCGAAGATTGCTGATTCTGTCAACCTC
Found at i:52016 original size:88 final size:88
Alignment explanation
Indices: 51862--52031 Score: 252
Period size: 88 Copynumber: 1.9 Consensus size: 88
51852 CTGTCAACCT
* * *
51862 CAGATCGAAGATTGTGAATCTTATCTTGCAAATACAGTGGAGAAGCAGATTTAAGCCATTAATCC
1 CAGATCGAAGATGGTGAATCTTATCTTCCAAATACAGTGCAGAAGCAGATTTAAGCCATTAATCC
51927 T-ATCACCCTAAGCAGTACTGGCG
66 TAAT-ACCCTAAGCAGTACTGGCG
* * * * *
51950 CAGATCGAAGATGGTGAATCTTATGTTCCCAATAGAGTGCAGAAGCAGATTTAAGTCATTAGTCC
1 CAGATCGAAGATGGTGAATCTTATCTTCCAAATACAGTGCAGAAGCAGATTTAAGCCATTAATCC
52015 TAATACCCTAAGCAGTA
66 TAATACCCTAAGCAGTA
52032 GTGGAGAAGG
Statistics
Matches: 73, Mismatches: 8, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
88 71 0.97
89 2 0.03
ACGTcount: A:0.34, C:0.19, G:0.21, T:0.26
Consensus pattern (88 bp):
CAGATCGAAGATGGTGAATCTTATCTTCCAAATACAGTGCAGAAGCAGATTTAAGCCATTAATCC
TAATACCCTAAGCAGTACTGGCG
Found at i:52176 original size:132 final size:132
Alignment explanation
Indices: 51929--52342 Score: 476
Period size: 132 Copynumber: 3.1 Consensus size: 132
51919 ATTAATCCTA
* * ** * * * *
51929 TCACCCTAAGCAGTACTGGCGCAGATCGAAGATGGTGAATCTTATGTTCCCAATAGAGTGCAGAA
1 TCACCCTAAACAGTAGTGATGCAGATCGAAGATAGTGAATCTTATCTTCCCAATACAGTGGAGAA
* * * * *
51994 GCAGATTTAAGTCATTAGTCCTAAT-ACCCTAAGCAGTAGTGGAGAAGGTTGAAGATTGGAGATT
66 GCAGATTTAAGCCATTAGTCCT-ATCATCCTAAGCAGTAGCGGAGTAGGTTGAAGATTGCAGATT
52058 CTG
130 CTG
* * * * * * *
52061 TCCCCCTCAGCAGTAGTGCA-GCGGATCGAGGATATTGAATCTTATCTTCCCAATACATTGGAGA
1 TCACCCTAAACAGTAGTG-ATGCAGATCGAAGATAGTGAATCTTATCTTCCCAATACAGTGGAGA
* * * *
52125 AACAAATTTAAGCCATTAGTCCTATCATCCTAAGCAGTAGCAGAGTCGGTTGAAGATTGCAGATT
65 AGCAGATTTAAGCCATTAGTCCTATCATCCTAAGCAGTAGCGGAGTAGGTTGAAGATTGCAGATT
52190 CTG
130 CTG
* * * * *
52193 TTACCCTAACCAGTGGTGATGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTAGAGAA
1 TCACCCTAAACAGTAGTGATGCAGATCGAAGATAGTGAATCTTATCTTCCCAATACAGTGGAGAA
* * *
52258 GCAGATTTAAGCCATTAGACCTATC-TCCCTAAGGAGTA-CTGGAATAGGTTGAAGATTGCAGAT
66 GCAGATTTAAGCCATTAGTCCTATCAT-CCTAAGCAGTAGC-GGAGTAGGTTGAAGATTGCAGAT
52321 TCTG
129 TCTG
52325 TCACCCTAAACAGTAGTG
1 TCACCCTAAACAGTAGTG
52343 GATAAGTAGA
Statistics
Matches: 235, Mismatches: 42, Indels: 10
0.82 0.15 0.03
Matches are distributed among these distances:
131 5 0.02
132 230 0.98
ACGTcount: A:0.31, C:0.20, G:0.23, T:0.27
Consensus pattern (132 bp):
TCACCCTAAACAGTAGTGATGCAGATCGAAGATAGTGAATCTTATCTTCCCAATACAGTGGAGAA
GCAGATTTAAGCCATTAGTCCTATCATCCTAAGCAGTAGCGGAGTAGGTTGAAGATTGCAGATTC
TG
Found at i:52364 original size:90 final size:90
Alignment explanation
Indices: 52260--52432 Score: 283
Period size: 90 Copynumber: 1.9 Consensus size: 90
52250 GTAGAGAAGC
* *
52260 AGATTTAAGCCATTAGACCTATCTCCCTAAGGAGTACTGGAATAGGTTGAAGATTGCAGATTCTG
1 AGATTTAAGCCATTAGACCTATCACCCTAAGCAGTACTGGAATAGGTTGAAGATTGCAGATTCTG
52325 TCACCCTAAACAGTAGTGGATAAGT
66 TCACCCTAAACAGTAGTGGATAAGT
* * * *
52350 AGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTCGGTTGAAGATTGCAGATTCTG
1 AGATTTAAGCCATTAGACCTATCACCCTAAGCAGTACTGGAATAGGTTGAAGATTGCAGATTCTG
*
52415 TCACCCTAACCAGTAGTG
66 TCACCCTAAACAGTAGTG
52433 ATGCAGATCG
Statistics
Matches: 76, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
90 76 1.00
ACGTcount: A:0.30, C:0.20, G:0.23, T:0.28
Consensus pattern (90 bp):
AGATTTAAGCCATTAGACCTATCACCCTAAGCAGTACTGGAATAGGTTGAAGATTGCAGATTCTG
TCACCCTAAACAGTAGTGGATAAGT
Found at i:52446 original size:44 final size:45
Alignment explanation
Indices: 52306--52447 Score: 125
Period size: 44 Copynumber: 3.2 Consensus size: 45
52296 CTGGAATAGG
*
52306 TTGAAGATTGCAGATTCTGTCACCCTAAACAGTAGTGGATAAGTAGA
1 TTGAAGATTGCAGATTCTGTCACCCTAAACAGTAGTGGAT--GCAGA
* * * * *
52353 TTTAAGCCATT--AG-TCCTATCACCCTAAGCAGTAGTGGA-GTC-GG
1 TTGAAG--ATTGCAGATTCTGTCACCCTAAACAGTAGTGGATG-CAGA
*
52396 TTGAAGATTGCAGATTCTGTCACCCTAACCAGTAGT-GATGCAGA
1 TTGAAGATTGCAGATTCTGTCACCCTAAACAGTAGTGGATGCAGA
*
52440 TCGAAGAT
1 TTGAAGAT
52448 GGCGAATCTT
Statistics
Matches: 75, Mismatches: 12, Indels: 19
0.71 0.11 0.18
Matches are distributed among these distances:
41 3 0.04
43 12 0.16
44 28 0.37
46 22 0.29
47 7 0.09
49 3 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.27
Consensus pattern (45 bp):
TTGAAGATTGCAGATTCTGTCACCCTAAACAGTAGTGGATGCAGA
Found at i:52513 original size:354 final size:354
Alignment explanation
Indices: 51862--52695 Score: 1042
Period size: 354 Copynumber: 2.4 Consensus size: 354
51852 CTGTCAACCT
* * *
51862 CAGATCGAAGATTGTGAATCTTATCTTGCAAATACAGTGGAGAAGCAGATTTAAGCCATTA-ATC
1 CAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGA-C
* * * * * ** * * *
51926 CTATCACCCTAAGCAGTACTGGCGCAGATCGAAGATGGTGAATCTTATGT-TCCC--AATAG-AG
65 CTATCACCCTAAGCAGTACTGGAGTAGGTTGAAGAT--TGCAGATTCTGTCACCCTAAACAGTAG
*
51987 TGCAGAAGCAGATTTAAGTCATTAGTCCTAATACCCTAAGCAGTAGTGGAGAAGGTTGAAGATTG
128 TGCAGAAGCAGATTTAAGCCATTAGTCCTAATACCCTAAGCAGTAGTGGAGAAGGTTGAAGATTG
* * * * * * **
52052 GAGATTCTGTCCCCCTCAGCAGTAGTGCAGCGGATCGAGGATATTGAATCTTATCTTCCCAATAC
193 CAGATTCTGTCACCCTAACCAGTAGTGCAGCAGATCGAAGATAGCGAATCTTATCTTCCCAATAC
* * * *
52117 ATTGGAGAAACAAATTTAAGCCATTAGTCCTATCATCCTAAGCAGTAGCAGAGTCGGTTGAAGAT
258 AGTGGAGAAACAAATTTAAGCCATTAGTCCTATCACCCTAAGCAATAGCAGAGTAGGTTGAAGAT
* *
52182 TGCAGATTCTGTTACCCTAACCAGTGGT-GATG
323 TGCAGATTCTGTCACCCTAACCAGTAGTGGA-G
*
52214 CAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTAGAGAAGCAGATTTAAGCCATTAGACC
1 CAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGACC
* * * *
52279 TATCTCCCTAAGGAGTACTGGAATAGGTTGAAGATTGCAGATTCTGTCACCCTAAACAGTAGTGG
66 TATCACCCTAAGCAGTACTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAACAGTAGTGC
* * **
52344 ATAAGTAGATTTAAGCCATTAGTCCT-ATCACCCTAAGCAGTAGTGGAGTCGGTTGAAGATTGCA
131 AGAAGCAGATTTAAGCCATTAGTCCTAAT-ACCCTAAGCAGTAGTGGAGAAGGTTGAAGATTGCA
*
52408 GATTCTGTCACCCTAACCAGTAGTG-ATGCAGATCGAAGATGGCGAATCTTATCTT-CCACATAC
195 GATTCTGTCACCCTAACCAGTAGTGCA-GCAGATCGAAGATAGCGAATCTTATCTTCCCA-ATAC
* * **
52471 AGTGGAGAAGCAGATTTAAGCCATTAG-CACTATCACCCTAAGCAATAGTGGAGTAGGTTGAAGA
258 AGTGGAGAAACAAATTTAAGCCATTAGTC-CTATCACCCTAAGCAATAGCAGAGTAGGTTGAAGA
* *
52535 TTGCAGATTTTGTCACCCTAAGCAGTAGTGGAG
322 TTGCAGATTCTGTCACCCTAACCAGTAGTGGAG
* * * *
52568 CAGATCGAAGATGGTG-ATCTTATCTTTCCAATACAGTGGAGAAGCAGATTTAAGCCATGAGTCA
1 CAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGACC
* ** * *
52632 TATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCAATCGCCCTAAGCAGTAGTG
66 TATCACCCTAAGCAGTACTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAACAGTAGTG
52696 ATGTAGATCG
Statistics
Matches: 415, Mismatches: 57, Indels: 19
0.85 0.12 0.04
Matches are distributed among these distances:
350 8 0.02
351 3 0.01
352 87 0.21
353 111 0.27
354 204 0.49
355 2 0.00
ACGTcount: A:0.31, C:0.19, G:0.23, T:0.26
Consensus pattern (354 bp):
CAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGACC
TATCACCCTAAGCAGTACTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAACAGTAGTGC
AGAAGCAGATTTAAGCCATTAGTCCTAATACCCTAAGCAGTAGTGGAGAAGGTTGAAGATTGCAG
ATTCTGTCACCCTAACCAGTAGTGCAGCAGATCGAAGATAGCGAATCTTATCTTCCCAATACAGT
GGAGAAACAAATTTAAGCCATTAGTCCTATCACCCTAAGCAATAGCAGAGTAGGTTGAAGATTGC
AGATTCTGTCACCCTAACCAGTAGTGGAG
Found at i:52530 original size:222 final size:222
Alignment explanation
Indices: 52130--52566 Score: 716
Period size: 222 Copynumber: 2.0 Consensus size: 222
52120 GGAGAAACAA
* *
52130 ATTTAAGCCATTAGTCCTATCATCCTAAGCAGTAGCAGAGTCGGTTGAAGATTGCAGATTCTGTT
1 ATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGCAGAGTCGGTTGAAGATTGCAGATTCTGTC
* *
52195 ACCCTAACCAGTGGTGATGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTAGAGAAGC
66 ACCCTAACCAGTAGTGATGCAGATCGAAGATGGCGAATCTTATCTTCCCAATACAGTAGAGAAGC
* * *
52260 AGATTTAAGCCATTAGACCTATCTCCCTAAGGAGTACTGGAATAGGTTGAAGATTGCAGATTCTG
131 AGATTTAAGCCATTAGACCTATCACCCTAAGCAATACTGGAATAGGTTGAAGATTGCAGATTCTG
52325 TCACCCTAAACAGTAGTGGATAAGTAG
196 TCACCCTAAACAGTAGTGGATAAGTAG
**
52352 ATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTCGGTTGAAGATTGCAGATTCTGTC
1 ATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGCAGAGTCGGTTGAAGATTGCAGATTCTGTC
*
52417 ACCCTAACCAGTAGTGATGCAGATCGAAGATGGCGAATCTTATCTT-CCACATACAGTGGAGAAG
66 ACCCTAACCAGTAGTGATGCAGATCGAAGATGGCGAATCTTATCTTCCCA-ATACAGTAGAGAAG
* * *
52481 CAGATTTAAGCCATTAG-CACTATCACCCTAAGCAATAGTGGAGTAGGTTGAAGATTGCAGATTT
130 CAGATTTAAGCCATTAGAC-CTATCACCCTAAGCAATACTGGAATAGGTTGAAGATTGCAGATTC
*
52545 TGTCACCCTAAGCAGTAGTGGA
194 TGTCACCCTAAACAGTAGTGGA
52567 GCAGATCGAA
Statistics
Matches: 199, Mismatches: 14, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
221 4 0.02
222 195 0.98
ACGTcount: A:0.31, C:0.19, G:0.23, T:0.27
Consensus pattern (222 bp):
ATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGCAGAGTCGGTTGAAGATTGCAGATTCTGTC
ACCCTAACCAGTAGTGATGCAGATCGAAGATGGCGAATCTTATCTTCCCAATACAGTAGAGAAGC
AGATTTAAGCCATTAGACCTATCACCCTAAGCAATACTGGAATAGGTTGAAGATTGCAGATTCTG
TCACCCTAAACAGTAGTGGATAAGTAG
Found at i:52576 original size:132 final size:132
Alignment explanation
Indices: 52339--52728 Score: 610
Period size: 131 Copynumber: 3.0 Consensus size: 132
52329 CCTAAACAGT
* * *
52339 AGTGGATAAGTAGATTTAAGCCATTAGTC-CTATCACCCTAAGCAGTAGTGGAGTCGGTTGAAGA
1 AGTGGAGAAGCAGATTTAAGCCATTAGTCACTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGA
*
52403 TTGCAGATTCTGTCACCCTAACCAGTAGTGATGCAGATCGAAGATGGCGAATCTTATCTTCCACA
66 TTGCAGATTCTGTCACCCTAAGCAGTAGTGATGCAGATCGAAGATGGCGAATCTTATCTTCCA-A
52468 TAC
130 TAC
*
52471 AGTGGAGAAGCAGATTTAAGCCATTAG-CACTATCACCCTAAGCAATAGTGGAGTAGGTTGAAGA
1 AGTGGAGAAGCAGATTTAAGCCATTAGTCACTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGA
* *
52535 TTGCAGATTTTGTCACCCTAAGCAGTAGTGGA-GCAGATCGAAGATGGTG-ATCTTATCTTTCCA
66 TTGCAGATTCTGTCACCCTAAGCAGTAGT-GATGCAGATCGAAGATGGCGAATCTTATC-TTCCA
52598 ATAC
129 ATAC
*
52602 AGTGGAGAAGCAGATTTAAGCCATGAGTCA-TATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGA
1 AGTGGAGAAGCAGATTTAAGCCATTAGTCACTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGA
** * *
52666 TTGCAGATTCAATCGCCCTAAGCAGTAGTGATGTAGATCGAAGATGGCGAATCTTATCTTCCA
66 TTGCAGATTCTGTCACCCTAAGCAGTAGTGATGCAGATCGAAGATGGCGAATCTTATCTTCCA
Statistics
Matches: 237, Mismatches: 15, Indels: 13
0.89 0.06 0.05
Matches are distributed among these distances:
130 2 0.01
131 117 0.49
132 116 0.49
133 2 0.01
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.26
Consensus pattern (132 bp):
AGTGGAGAAGCAGATTTAAGCCATTAGTCACTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGA
TTGCAGATTCTGTCACCCTAAGCAGTAGTGATGCAGATCGAAGATGGCGAATCTTATCTTCCAAT
AC
Found at i:52656 original size:131 final size:133
Alignment explanation
Indices: 52339--52725 Score: 604
Period size: 132 Copynumber: 2.9 Consensus size: 133
52329 CCTAAACAGT
* * * *
52339 AGTGGATAAGTAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTCGGTTGAAGAT
1 AGTGGAGAAGCAGATTTAAGCCATTAGTCATATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGAT
*
52404 TGCAGATTCTGTCACCCTAACCAGTAGTGATGCAGATCGAAGATGGCGAATCTTATC-TTCCACA
66 TGCAGATTCTGTCACCCTAAGCAGTAGTGATGCAGATCGAAGATGGCGAATCTTATCTTTCCACA
52468 TAC
131 TAC
*
52471 AGTGGAGAAGCAGATTTAAGCCATTAG-CACTATCACCCTAAGCAATAGTGGAGTAGGTTGAAGA
1 AGTGGAGAAGCAGATTTAAGCCATTAGTCA-TATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGA
* *
52535 TTGCAGATTTTGTCACCCTAAGCAGTAGTGGA-GCAGATCGAAGATGGTG-ATCTTATCTTTCCA
65 TTGCAGATTCTGTCACCCTAAGCAGTAGT-GATGCAGATCGAAGATGGCGAATCTTATCTTTCCA
52598 -ATAC
129 CATAC
*
52602 AGTGGAGAAGCAGATTTAAGCCATGAGTCATATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGAT
1 AGTGGAGAAGCAGATTTAAGCCATTAGTCATATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGAT
** * *
52667 TGCAGATTCAATCGCCCTAAGCAGTAGTGATGTAGATCGAAGATGGCGAATCTTATCTT
66 TGCAGATTCTGTCACCCTAAGCAGTAGTGATGCAGATCGAAGATGGCGAATCTTATCTT
52726 CCA
Statistics
Matches: 233, Mismatches: 16, Indels: 12
0.89 0.06 0.05
Matches are distributed among these distances:
130 2 0.01
131 112 0.48
132 117 0.50
133 2 0.01
ACGTcount: A:0.31, C:0.18, G:0.25, T:0.27
Consensus pattern (133 bp):
AGTGGAGAAGCAGATTTAAGCCATTAGTCATATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGAT
TGCAGATTCTGTCACCCTAAGCAGTAGTGATGCAGATCGAAGATGGCGAATCTTATCTTTCCACA
TAC
Done.