Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold3154

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 474

Length: 791
ACGTcount: A:0.30, C:0.21, G:0.17, T:0.32


Found at i:750 original size:30 final size:30

Alignment explanation


    Indices: 714--771  Score: 98
    Period size: 30  Copynumber: 1.9  Consensus size: 30

        704 GGATCCTATA

                    *      *              
        714 GTCACGGTGAATTACTCAAGAACGTTTTTC
          1 GTCACGGTAAATTACCCAAGAACGTTTTTC

                                        
        744 GTCACGGTAAATTACCCAAGAACGTTTT
          1 GTCACGGTAAATTACCCAAGAACGTTTT

        772 GGATCAAATT


Statistics
Matches: 26,  Mismatches: 2, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  30   26  1.00

ACGTcount: A:0.29, C:0.21, G:0.19, T:0.31


Consensus pattern (30 bp):   
GTCACGGTAAATTACCCAAGAACGTTTTTC
Done.