Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold3206

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 470

Length: 784
ACGTcount: A:0.29, C:0.06, G:0.23, T:0.42


Found at i:710 original size:7 final size:7

Alignment explanation


    Indices: 700--753  Score: 63
    Period size: 7  Copynumber: 7.6  Consensus size: 7

        690 GACTTTTAGT

                   
        700 GTTTGGG
          1 GTTTGGG

                 *  
        707 GTTTTAGG
          1 G-TTTGGG

                   
        715 GTTTGGG
          1 GTTTGGG

                *  
        722 GTTTAGG
          1 GTTTGGG

                   
        729 GTTTGGG
          1 GTTTGGG

            *      
        736 ATTTGGG
          1 GTTTGGG

                 * 
        743 GTTTGAG
          1 GTTTGGG

                
        750 GTTT
          1 GTTT

        754 AAGGTTTAGA


Statistics
Matches: 39,  Mismatches: 7, Indels: 2
        0.81            0.15        0.04

Matches are distributed among these distances:
   7   33  0.85
   8    6  0.15

ACGTcount: A:0.07, C:0.00, G:0.46, T:0.46


Consensus pattern (7 bp):   
GTTTGGG

Found at i:728 original size:14 final size:14

Alignment explanation


    Indices: 694--760  Score: 80
    Period size: 14  Copynumber: 4.7  Consensus size: 14

        684 GGTTTTGACT

                 *        
        694 TTTAGTGTTTGGGG
          1 TTTAGGGTTTGGGG

                           
        708 TTTTAGGGTTTGGGG
          1 -TTTAGGGTTTGGGG

                         *
        723 TTTAGGGTTTGGGA
          1 TTTAGGGTTTGGGG

               *       *  
        737 TTTGGGGTTTGAGG
          1 TTTAGGGTTTGGGG

                *     
        751 TTTAAGGTTT
          1 TTTAGGGTTT

        761 AGAAATTATA


Statistics
Matches: 45,  Mismatches: 7, Indels: 1
        0.85            0.13        0.02

Matches are distributed among these distances:
  14   32  0.71
  15   13  0.29

ACGTcount: A:0.10, C:0.00, G:0.42, T:0.48


Consensus pattern (14 bp):   
TTTAGGGTTTGGGG
Done.