Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold839

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5476
ACGTcount: A:0.11, C:0.05, G:0.05, T:0.11

Warning! 3710 characters in sequence are not A, C, G, or T


Found at i:577 original size:20 final size:20

Alignment explanation


    Indices: 552--602  Score: 77
    Period size: 20  Copynumber: 2.6  Consensus size: 20

        542 CATTTTTGGT

                            *   
        552 TCATTCGAGCTCAAGTTAGC
          1 TCATTCGAGCTCAAGTCAGC

                                
        572 TCATTCGAGCTCAAGTCAGC
          1 TCATTCGAGCTCAAGTCAGC

            *           
        592 ACATT-GAGCTC
          1 TCATTCGAGCTC

        603 GTTATTAGCT


Statistics
Matches: 29,  Mismatches: 2, Indels: 1
        0.91            0.06        0.03

Matches are distributed among these distances:
  19    6  0.21
  20   23  0.79

ACGTcount: A:0.25, C:0.27, G:0.20, T:0.27


Consensus pattern (20 bp):   
TCATTCGAGCTCAAGTCAGC
Done.