Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold1266

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2219
ACGTcount: A:0.33, C:0.17, G:0.22, T:0.28


Found at i:1253 original size:24 final size:24

Alignment explanation


    Indices: 1226--1271  Score: 65
    Period size: 24  Copynumber: 1.9  Consensus size: 24

       1216 AGAACAATCC

                  *     *           
       1226 CAAAAGGAAATGCAGGAGCAGCTT
          1 CAAAAGCAAATGAAGGAGCAGCTT

                          *       
       1250 CAAAAGCAAATGAATGAGCAGC
          1 CAAAAGCAAATGAAGGAGCAGC

       1272 AAAAGAATCT


Statistics
Matches: 19,  Mismatches: 3, Indels: 0
        0.86            0.14        0.00

Matches are distributed among these distances:
  24   19  1.00

ACGTcount: A:0.46, C:0.17, G:0.26, T:0.11


Consensus pattern (24 bp):   
CAAAAGCAAATGAAGGAGCAGCTT
Done.