Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold3185

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 472

Length: 787
ACGTcount: A:0.38, C:0.14, G:0.18, T:0.27

Warning! 26 characters in sequence are not A, C, G, or T


Found at i:648 original size:27 final size:27

Alignment explanation


    Indices: 617--672  Score: 112
    Period size: 27  Copynumber: 2.1  Consensus size: 27

        607 CGTTATTCGA

                                       
        617 GAAAGAGAATCATATCCAGTAAGTTAG
          1 GAAAGAGAATCATATCCAGTAAGTTAG

                                       
        644 GAAAGAGAATCATATCCAGTAAGTTAG
          1 GAAAGAGAATCATATCCAGTAAGTTAG

              
        671 GA
          1 GA

        673 CACAATGTCT


Statistics
Matches: 29,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  27   29  1.00

ACGTcount: A:0.45, C:0.11, G:0.23, T:0.21


Consensus pattern (27 bp):   
GAAAGAGAATCATATCCAGTAAGTTAG
Done.