Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold3693

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 410

Length: 684
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.30


Found at i:549 original size:132 final size:132

Alignment explanation


    Indices: 389--629  Score: 392
    Period size: 132  Copynumber: 1.8  Consensus size: 132

        379 AGAATATTGA

                              *                      *      *                
        389 CTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCTGTCATCTTTGATCTGCTCCACTACT
          1 CTTCAATGTACTCCACTGCAACCACAGGGAGGTAAAATCTGCCATCTTCGATCTGCTCCACTACT

                                       *          *                          
        454 GCTTAGGGAAACAAGATCTGAAATCTTTAATCTATTCCGCTGCTGCCCAGGGAAGTAGAATTACT
         66 GCTTAGGGAAACAAGATCTGAAATCTTCAATCTATTCCACTGCTGCCCAGGGAAGTAGAATTACT

              
        519 GG
        131 GG

                                  **                                         
        521 CTTCAATGTACTCCACTGCAACTTCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTCCACTACT
          1 CTTCAATGTACTCCACTGCAACCACAGGGAGGTAAAATCTGCCATCTTCGATCTGCTCCACTACT

                     **                  *              
        586 GCTTAGGGAGGCAAGATCTGAAATCTTCAGTCTATTCCACTGCT
         66 GCTTAGGGAAACAAGATCTGAAATCTTCAATCTATTCCACTGCT

        630 ATGTCGGGGA


Statistics
Matches: 99,  Mismatches: 10, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
 132   99  1.00

ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29


Consensus pattern (132 bp):   
CTTCAATGTACTCCACTGCAACCACAGGGAGGTAAAATCTGCCATCTTCGATCTGCTCCACTACT
GCTTAGGGAAACAAGATCTGAAATCTTCAATCTATTCCACTGCTGCCCAGGGAAGTAGAATTACT
GG
Done.