Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold3422

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 449

Length: 749
ACGTcount: A:0.34, C:0.14, G:0.17, T:0.34


Found at i:179 original size:7 final size:8

Alignment explanation


    Indices: 162--186  Score: 50
    Period size: 8  Copynumber: 3.1  Consensus size: 8

        152 AATCAGATTC

                    
        162 AAAAATAA
          1 AAAAATAA

                    
        170 AAAAATAA
          1 AAAAATAA

                    
        178 AAAAATAA
          1 AAAAATAA

             
        186 A
          1 A

        187 GGAGGAATTG


Statistics
Matches: 17,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   8   17  1.00

ACGTcount: A:0.88, C:0.00, G:0.00, T:0.12


Consensus pattern (8 bp):   
AAAAATAA
Done.