Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: scaffold446
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 230525
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.33
Warning! 1893 characters in sequence are not A, C, G, or T
Found at i:522 original size:96 final size:96
Alignment explanation
Indices: 397--594 Score: 371
Period size: 96 Copynumber: 2.1 Consensus size: 96
387 AAATTTATAT
397 TTTTTTACGTTTTTTTATAGGTTTAGGATATATTTGTTTACACCCAAATTCCCATTCATTTTCTA
1 TTTTTTACG-TTTTTTATAGGTTTAGGATATATTTGTTTACACCCAAATTCCCATTCATTTTCTA
462 ATATTTTAGAACAATATTTATAACCTAATTTA
65 ATATTTTAGAACAATATTTATAACCTAATTTA
494 TTTTTTACG-TTTTTATAGGTTTTAGGATATATTTGTTTACACCCAAATTCCCATTCATTTTCTA
1 TTTTTTACGTTTTTTATAGG-TTTAGGATATATTTGTTTACACCCAAATTCCCATTCATTTTCTA
558 ATATTTTAGAACAATATTTATAACCTAATTTA
65 ATATTTTAGAACAATATTTATAACCTAATTTA
590 TTTTT
1 TTTTT
595 GACTTGTTTA
Statistics
Matches: 100, Mismatches: 0, Indels: 3
0.97 0.00 0.03
Matches are distributed among these distances:
95 10 0.10
96 81 0.81
97 9 0.09
ACGTcount: A:0.29, C:0.13, G:0.07, T:0.51
Consensus pattern (96 bp):
TTTTTTACGTTTTTTATAGGTTTAGGATATATTTGTTTACACCCAAATTCCCATTCATTTTCTAA
TATTTTAGAACAATATTTATAACCTAATTTA
Found at i:565 original size:48 final size:48
Alignment explanation
Indices: 418--566 Score: 128
Period size: 48 Copynumber: 3.1 Consensus size: 48
408 TTTTTATAGG
418 TTTAGGATATATTTGTTTACACCCAAATTCCCATTCATTTTCTAATAT
1 TTTAGGATATATTTGTTTACACCCAAATTCCCATTCATTTTCTAATAT
* * * * * **** *
466 TTTAGAACA-ATATT-TATA-ACCTAATTTATTTTTTACGTTTT-T-ATAGGT
1 TTTAGGATATAT-TTGTTTACACCCAAATT-CCCATT-CATTTTCTAATA--T
514 TTTAGGATATATTTGTTTACACCCAAATTCCCATTCATTTTCTAATAT
1 TTTAGGATATATTTGTTTACACCCAAATTCCCATTCATTTTCTAATAT
562 TTTAG
1 TTTAG
567 AACAATATTT
Statistics
Matches: 71, Mismatches: 20, Indels: 20
0.64 0.18 0.18
Matches are distributed among these distances:
46 10 0.14
47 8 0.11
48 35 0.49
49 8 0.11
50 10 0.14
ACGTcount: A:0.30, C:0.15, G:0.07, T:0.48
Consensus pattern (48 bp):
TTTAGGATATATTTGTTTACACCCAAATTCCCATTCATTTTCTAATAT
Found at i:2083 original size:14 final size:14
Alignment explanation
Indices: 2064--2127 Score: 65
Period size: 14 Copynumber: 4.5 Consensus size: 14
2054 ACCCTTGAAT
2064 CCCTAAATCCTAAC
1 CCCTAAATCCTAAC
2078 CCCTAAATCACTAAC
1 CCCTAAATC-CTAAC
* * **
2093 TCTTAACCCCTAAC
1 CCCTAAATCCTAAC
* *
2107 CCCTAACTACTAAC
1 CCCTAAATCCTAAC
2121 CCCTAAA
1 CCCTAAA
2128 CCTTAAATCC
Statistics
Matches: 40, Mismatches: 9, Indels: 2
0.78 0.18 0.04
Matches are distributed among these distances:
14 30 0.75
15 10 0.25
ACGTcount: A:0.36, C:0.42, G:0.00, T:0.22
Consensus pattern (14 bp):
CCCTAAATCCTAAC
Found at i:2140 original size:21 final size:20
Alignment explanation
Indices: 2065--2148 Score: 78
Period size: 21 Copynumber: 4.0 Consensus size: 20
2055 CCCTTGAATC
2065 CCTAAATCCTAACCCCTAAA
1 CCTAAATCCTAACCCCTAAA
* * *
2085 TCACTAACTCTTAACCCCTAACC
1 -C-CTAAATCCTAACCCCTAA-A
* *
2108 CCTAACTACTAACCCCTAAA
1 CCTAAATCCTAACCCCTAAA
*
2128 CCTTAAATCCTAACCCTTAAA
1 CC-TAAATCCTAACCCCTAAA
2149 TTAACCATAA
Statistics
Matches: 51, Mismatches: 9, Indels: 6
0.77 0.14 0.09
Matches are distributed among these distances:
20 2 0.04
21 32 0.63
22 17 0.33
ACGTcount: A:0.37, C:0.39, G:0.00, T:0.24
Consensus pattern (20 bp):
CCTAAATCCTAACCCCTAAA
Found at i:2411 original size:7 final size:7
Alignment explanation
Indices: 2399--2450 Score: 52
Period size: 7 Copynumber: 7.3 Consensus size: 7
2389 AATAGTTAAT
2399 CTAAACC
1 CTAAACC
2406 CTAAACC
1 CTAAACC
*
2413 ATAAA-C
1 CTAAACC
*
2419 TTAAACC
1 CTAAACC
*
2426 CTAAAACT
1 CT-AAACC
2434 CTAAACC
1 CTAAACC
2441 CATAAACC
1 C-TAAACC
2449 CT
1 CT
2451 TAACACATAA
Statistics
Matches: 37, Mismatches: 5, Indels: 6
0.77 0.10 0.12
Matches are distributed among these distances:
6 5 0.14
7 19 0.51
8 13 0.35
ACGTcount: A:0.46, C:0.35, G:0.00, T:0.19
Consensus pattern (7 bp):
CTAAACC
Found at i:2447 original size:15 final size:15
Alignment explanation
Indices: 2400--2470 Score: 58
Period size: 15 Copynumber: 4.9 Consensus size: 15
2390 ATAGTTAATC
*
2400 TAAACCCTAAA-CCA
1 TAAACTCTAAACCCA
2414 TAAACT-TAAACCC-
1 TAAACTCTAAACCCA
2427 TAAAACTCTAAACCCA
1 T-AAACTCTAAACCCA
* * *
2443 TAAACCCTTAACACA
1 TAAACTCTAAACCCA
* *
2458 TAACCTTTAAACC
1 TAAACTCTAAACC
2471 TTAAACCCCG
Statistics
Matches: 44, Mismatches: 9, Indels: 7
0.73 0.15 0.12
Matches are distributed among these distances:
13 5 0.11
14 12 0.27
15 26 0.59
16 1 0.02
ACGTcount: A:0.46, C:0.32, G:0.00, T:0.21
Consensus pattern (15 bp):
TAAACTCTAAACCCA
Found at i:2526 original size:15 final size:15
Alignment explanation
Indices: 2491--2529 Score: 53
Period size: 15 Copynumber: 2.7 Consensus size: 15
2481 GCCTTTTAAA
2491 CCATAAACC-ATAAC
1 CCATAAACCTATAAC
* *
2505 CCCTAAACCTATAAT
1 CCATAAACCTATAAC
2520 CCATAAACCT
1 CCATAAACCT
2530 TAAAATGGTA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
14 8 0.38
15 13 0.62
ACGTcount: A:0.44, C:0.36, G:0.00, T:0.21
Consensus pattern (15 bp):
CCATAAACCTATAAC
Found at i:2533 original size:22 final size:21
Alignment explanation
Indices: 2486--2567 Score: 60
Period size: 22 Copynumber: 3.8 Consensus size: 21
2476 CCCCGGCCTT
*
2486 TTAAACCATAAACCATAACCC
1 TTAAACCATAAACCATAAACC
* *
2507 CTAAACCTATAATCCATAAACC
1 TTAAACC-ATAAACCATAAACC
***
2529 TTAAAATGGTAACACC-TAAACC
1 TT-AAACCATAA-ACCATAAACC
2551 TTAAACTC-TAAACCATA
1 TTAAAC-CATAAACCATA
2568 TATCCTAAAC
Statistics
Matches: 46, Mismatches: 10, Indels: 10
0.70 0.15 0.15
Matches are distributed among these distances:
20 3 0.07
21 14 0.30
22 24 0.52
23 5 0.11
ACGTcount: A:0.46, C:0.28, G:0.02, T:0.23
Consensus pattern (21 bp):
TTAAACCATAAACCATAAACC
Found at i:4869 original size:28 final size:28
Alignment explanation
Indices: 4838--4923 Score: 154
Period size: 28 Copynumber: 3.1 Consensus size: 28
4828 TATGCATATC
* *
4838 AAAGCATTATCGTATTATTTAGTTTTTT
1 AAAGCATTATTGTATTAGTTAGTTTTTT
4866 AAAGCATTATTGTATTAGTTAGTTTTTT
1 AAAGCATTATTGTATTAGTTAGTTTTTT
4894 AAAGCATTATTGTATTAGTTAGTTTTTT
1 AAAGCATTATTGTATTAGTTAGTTTTTT
4922 AA
1 AA
4924 CATTAACTAA
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 56 1.00
ACGTcount: A:0.30, C:0.05, G:0.13, T:0.52
Consensus pattern (28 bp):
AAAGCATTATTGTATTAGTTAGTTTTTT
Found at i:5348 original size:42 final size:43
Alignment explanation
Indices: 5182--5438 Score: 299
Period size: 43 Copynumber: 6.0 Consensus size: 43
5172 GAACGGTACT
* *
5182 TTTAGCAGCGTTTGTGATAAAAGCTCCGCT-AAAGATCATGTTC
1 TTTAGCGGCGTTTGTGATAAAAGCGCCGCTAAAAG-TCATGTTC
* * * * *
5225 TTTATCGGCTTTTGTGAAAAAAATC-CCGCTAAAAGTCATGCTC
1 TTTAGCGGCGTTTGTG-ATAAAAGCGCCGCTAAAAGTCATGTTC
* *
5268 TTTAGCGGCGTTTGTGATAAAAGCGCCGCTAAAGGTCATGTTT
1 TTTAGCGGCGTTTGTGATAAAAGCGCCGCTAAAAGTCATGTTC
*
5311 TTTAGCGGCGTTTGTGAT-ATAGCGCCGCTAAAAGTCATGTTC
1 TTTAGCGGCGTTTGTGATAAAAGCGCCGCTAAAAGTCATGTTC
* * * * *
5353 TTTAGTGGCATTTGTGAT-AAAGAGCCACTAAAGGTCATGTTC
1 TTTAGCGGCGTTTGTGATAAAAGCGCCGCTAAAAGTCATGTTC
* *
5395 TTTAGCGGCGTTTTTTATAAAAGCGCCGCT-AAAGATCATGTTC
1 TTTAGCGGCGTTTGTGATAAAAGCGCCGCTAAAAG-TCATGTTC
5438 T
1 T
5439 ATAGTGACAT
Statistics
Matches: 180, Mismatches: 29, Indels: 10
0.82 0.13 0.05
Matches are distributed among these distances:
42 80 0.44
43 90 0.50
44 10 0.06
ACGTcount: A:0.26, C:0.18, G:0.23, T:0.33
Consensus pattern (43 bp):
TTTAGCGGCGTTTGTGATAAAAGCGCCGCTAAAAGTCATGTTC
Found at i:5420 original size:85 final size:85
Alignment explanation
Indices: 5192--5450 Score: 285
Period size: 85 Copynumber: 3.0 Consensus size: 85
5182 TTTAGCAGCG
* * * *
5192 TTTGTGATAAA-AGCTCCGCTAAAGATCATGTTCTTTATCGGC-TTTTGTGAAAAAAATC-CCGC
1 TTTGTGATAAAGAG--CCGCTAAAGGTCATGTTCTTTAGCGGCGTTTT-T-AATAAAAGCGCCGC
* * *
5254 TAAAAGTCATGCTCTTTAGCGGCG
62 TAAAAGTCATGTTCTTTAGTGGCA
* * * * *
5278 TTTGTGATAAAAGCGCCGCTAAAGGTCATGTTTTTTAGCGGCGTTTGTGAT-ATAGCGCCGCTAA
1 TTTGTGAT-AAAGAGCCGCTAAAGGTCATGTTCTTTAGCGGCGTTTTTAATAAAAGCGCCGCTAA
5342 AAGTCATGTTCTTTAGTGGCA
65 AAGTCATGTTCTTTAGTGGCA
* *
5363 TTTGTGATAAAGAGCCACTAAAGGTCATGTTCTTTAGCGGCGTTTTTTATAAAAGCGCCGCT-AA
1 TTTGTGATAAAGAGCCGCTAAAGGTCATGTTCTTTAGCGGCGTTTTTAATAAAAGCGCCGCTAAA
* *
5427 AGATCATGTTCTATAGTGACA
66 AG-TCATGTTCTTTAGTGGCA
5448 TTT
1 TTT
5451 TTTTCACATA
Statistics
Matches: 147, Mismatches: 20, Indels: 13
0.82 0.11 0.07
Matches are distributed among these distances:
84 44 0.30
85 63 0.43
86 33 0.22
87 6 0.04
88 1 0.01
ACGTcount: A:0.27, C:0.17, G:0.22, T:0.34
Consensus pattern (85 bp):
TTTGTGATAAAGAGCCGCTAAAGGTCATGTTCTTTAGCGGCGTTTTTAATAAAAGCGCCGCTAAA
AGTCATGTTCTTTAGTGGCA
Found at i:6513 original size:91 final size:87
Alignment explanation
Indices: 6351--6582 Score: 268
Period size: 87 Copynumber: 2.6 Consensus size: 87
6341 AAGCCCTTGC
* * * * * *
6351 TTTTTTTTTTAACTCAATTGAGTACTTGAACTTTCAAAATGCATCAAAAAGGCCCTTAAACTTTT
1 TTTTTTTTTTCACTCAATTGGGTACTTGAATTTTCAAAATGCATAAAAAAGACCCTCAAAC--TT
* ** ***
6416 TCAAAAAAAGCAATTAAGGTCTTGGT
64 T-AAAAAAA-AAATTAAGCCCCAAGT
6442 TTTTTTTTTTCACTCAATTGGGTACTTGAATTTTCAAAATGCATAAAAAAGACCCTCAAACTTTA
1 TTTTTTTTTTCACTCAATTGGGTACTTGAATTTTCAAAATGCATAAAAAAGACCCTCAAACTTTA
6507 AAAAAAAAATTAAGCCCCAAGT
66 AAAAAAAAATTAAGCCCCAAGT
** **
6529 TTTTTTTTGGCACTCAATTGGGTACTTGAGATGCT-AAAATGCATAAAAAAGACC
1 TTTTTTTTTTCACTCAATTGGGTACTTGA-ATTTTCAAAATGCATAAAAAAGACC
6583 TTTCTACAAT
Statistics
Matches: 124, Mismatches: 16, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
87 56 0.45
88 10 0.08
89 3 0.02
91 55 0.44
ACGTcount: A:0.37, C:0.16, G:0.12, T:0.35
Consensus pattern (87 bp):
TTTTTTTTTTCACTCAATTGGGTACTTGAATTTTCAAAATGCATAAAAAAGACCCTCAAACTTTA
AAAAAAAAATTAAGCCCCAAGT
Found at i:6704 original size:18 final size:18
Alignment explanation
Indices: 6680--6792 Score: 75
Period size: 18 Copynumber: 5.9 Consensus size: 18
6670 TGACAAAAAA
*
6680 ATAAAAATCAATAAAAGTT
1 ATAAAAAT-AATAAAAATT
*
6699 ATAAAAATTATAAAAATT
1 ATAAAAATAATAAAAATT
6717 ATAAAATTATAATAAAAA-T
1 ATAAAA--ATAATAAAAATT
* * **
6736 AAAAAAATATTTAAATTTT
1 ATAAAAATA-ATAAAAATT
*
6755 ATTAAAAATTAGAAAAAAAATT
1 A-TAAAAA-T--AATAAAAATT
*
6777 ATAAAAATAGTAAAAA
1 ATAAAAATAATAAAAA
6793 ATGATAAAAT
Statistics
Matches: 72, Mismatches: 14, Indels: 17
0.70 0.14 0.17
Matches are distributed among these distances:
17 3 0.04
18 24 0.33
19 16 0.22
20 15 0.21
21 7 0.10
22 6 0.08
23 1 0.01
ACGTcount: A:0.66, C:0.01, G:0.03, T:0.30
Consensus pattern (18 bp):
ATAAAAATAATAAAAATT
Found at i:6704 original size:26 final size:25
Alignment explanation
Indices: 6674--6744 Score: 81
Period size: 27 Copynumber: 2.7 Consensus size: 25
6664 AAAAAATGAC
6674 AAAAAAATAAAAATCAATAAAAGTTAT
1 AAAAAAATAAAAAT-AATAAAA-TTAT
* *
6701 AAAAATTATAAAAATTATAAAATTAT
1 AAAAA-AATAAAAATAATAAAATTAT
6727 AATAAAAATAAAAA-AATA
1 AA-AAAAATAAAAATAATA
6745 TTTAAATTTT
Statistics
Matches: 38, Mismatches: 4, Indels: 6
0.79 0.08 0.12
Matches are distributed among these distances:
25 3 0.08
26 13 0.34
27 14 0.37
28 8 0.21
ACGTcount: A:0.72, C:0.01, G:0.01, T:0.25
Consensus pattern (25 bp):
AAAAAAATAAAAATAATAAAATTAT
Found at i:6732 original size:29 final size:28
Alignment explanation
Indices: 6699--6839 Score: 81
Period size: 28 Copynumber: 4.8 Consensus size: 28
6689 AATAAAAGTT
6699 ATAAAAATTATAAAAATTATAAAATTATA
1 ATAAAAATTATAAAAATTATAAAA-TATA
* * * *
6728 ATAAAAA-TAAAAAAATATTTAAATTTTA
1 ATAAAAATTATAAAAAT-TATAAAATATA
* *
6756 TTAAAAATTAGAAAAAAAATTATAAAA-ATA
1 ATAAAAATT---ATAAAAATTATAAAATATA
* * *
6786 GTAAAAAATGAT-AAAATATATAGAATATA
1 AT-AAAAATTATAAAAAT-TATAAAATATA
* *
6815 GAAAAAAATTATAAAATTTTATAAA
1 -ATAAAAATTATAAAA-ATTATAAA
6840 GTCGTAAGAA
Statistics
Matches: 84, Mismatches: 17, Indels: 21
0.69 0.14 0.17
Matches are distributed among these distances:
27 5 0.06
28 24 0.29
29 24 0.29
30 11 0.13
31 12 0.14
32 8 0.10
ACGTcount: A:0.65, C:0.00, G:0.04, T:0.31
Consensus pattern (28 bp):
ATAAAAATTATAAAAATTATAAAATATA
Found at i:6737 original size:9 final size:9
Alignment explanation
Indices: 6674--6744 Score: 65
Period size: 9 Copynumber: 7.8 Consensus size: 9
6664 AAAAAATGAC
6674 AAAAA-AAT
1 AAAAATAAT
6682 AAAAATCAAT
1 AAAAAT-AAT
* *
6692 AAAAGTTAT
1 AAAAATAAT
*
6701 AAAAATTAT
1 AAAAATAAT
*
6710 AAAAATTAT
1 AAAAATAAT
6719 AAAATTATAAT
1 AAAA--ATAAT
6730 AAAAATAA-
1 AAAAATAAT
6738 AAAAATA
1 AAAAATA
6745 TTTAAATTTT
Statistics
Matches: 55, Mismatches: 4, Indels: 8
0.82 0.06 0.12
Matches are distributed among these distances:
8 12 0.22
9 27 0.49
10 8 0.15
11 8 0.15
ACGTcount: A:0.72, C:0.01, G:0.01, T:0.25
Consensus pattern (9 bp):
AAAAATAAT
Found at i:6737 original size:17 final size:17
Alignment explanation
Indices: 6680--6744 Score: 58
Period size: 19 Copynumber: 3.5 Consensus size: 17
6670 TGACAAAAAA
6680 ATAAAAATCAATAAAAGTT
1 ATAAAAAT-AATAAAA-TT
*
6699 ATAAAAATTATAAAAATT
1 ATAAAAATAAT-AAAATT
*
6717 ATAAAATTATAATAAAAAT
1 ATAAAA--ATAATAAAATT
*
6736 AAAAAAATA
1 ATAAAAATA
6745 TTTAAATTTT
Statistics
Matches: 39, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
17 3 0.08
18 10 0.26
19 22 0.56
20 4 0.10
ACGTcount: A:0.69, C:0.02, G:0.02, T:0.28
Consensus pattern (17 bp):
ATAAAAATAATAAAATT
Found at i:6782 original size:10 final size:10
Alignment explanation
Indices: 6692--6959 Score: 52
Period size: 10 Copynumber: 27.5 Consensus size: 10
6682 AAAAATCAAT
*
6692 AAAAGTTAT-
1 AAAAATTATA
6701 AAAAATTAT-
1 AAAAATTATA
6710 AAAAATTAT-
1 AAAAATTATA
6719 -AAAATTATA
1 AAAAATTATA
6728 ATAAAA--ATA
1 A-AAAATTATA
* *
6737 AAAAAATATTT
1 AAAAATTA-TA
** *
6748 AAATTTTATT
1 AAAAATTATA
*
6758 AAAAATTAGAAA
1 AAAAATT--ATA
6770 AAAAATTAT-
1 AAAAATTATA
6779 AAAAA-TAGTA
1 AAAAATTA-TA
*
6789 AAAAATGATA
1 AAAAATTATA
*
6799 AAATA-TATA
1 AAAAATTATA
* * *
6808 GAATA-TAGAA
1 AAAAATTA-TA
6818 AAAAATTAT-
1 AAAAATTATA
*
6827 -AAAATTTTA
1 AAAAATTATA
* * **
6836 TAAAGTCGTA
1 AAAAATTATA
6846 AGAAAATTAT-
1 A-AAAATTATA
*
6856 -AAAATTTTA
1 AAAAATTATA
* * **
6865 TAAAGTCGTA
1 AAAAATTATA
6875 AGAAAATTATA
1 A-AAAATTATA
6886 AAAAATGTA-A
1 AAAAAT-TATA
*
6896 AGAAA-TAT-
1 AAAAATTATA
*
6904 -AAAATTCGTAA
1 AAAAATT-AT-A
6915 AAAAATTAT-
1 AAAAATTATA
*
6924 AAAAATTATC
1 AAAAATTATA
**
6934 GTAAATTCATA
1 AAAAATT-ATA
6945 AAAAATTATA
1 AAAAATTATA
6955 AAAAA
1 AAAAA
6960 AATATCGTAC
Statistics
Matches: 188, Mismatches: 43, Indels: 55
0.66 0.15 0.19
Matches are distributed among these distances:
7 3 0.02
8 31 0.16
9 46 0.24
10 59 0.31
11 35 0.19
12 14 0.07
ACGTcount: A:0.62, C:0.02, G:0.06, T:0.30
Consensus pattern (10 bp):
AAAAATTATA
Found at i:6791 original size:30 final size:28
Alignment explanation
Indices: 6710--6792 Score: 69
Period size: 30 Copynumber: 2.8 Consensus size: 28
6700 TAAAAATTAT
6710 AAAAATTATAAAATTATAATAAAAATAAAA
1 AAAAATTATAAAA--ATAATAAAAATAAAA
* ** *
6740 AAATATT-TAAATTTTATTAAAAATTAGAAA
1 AAAAATTATAAA-AATAATAAAAA-TA-AAA
*
6770 AAAAATTATAAAAATAGTAAAAA
1 AAAAATTATAAAAATAATAAAAA
6793 ATGATAAAAT
Statistics
Matches: 41, Mismatches: 8, Indels: 8
0.72 0.14 0.14
Matches are distributed among these distances:
28 8 0.20
29 6 0.15
30 23 0.56
31 4 0.10
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.30
Consensus pattern (28 bp):
AAAAATTATAAAAATAATAAAAATAAAA
Found at i:6793 original size:19 final size:18
Alignment explanation
Indices: 6692--6807 Score: 63
Period size: 19 Copynumber: 6.0 Consensus size: 18
6682 AAAAATCAAT
*
6692 AAAAGTTATAAAAAT-TA
1 AAAAATTATAAAAATATA
*
6709 TAAAAATTATAAAATTATA
1 -AAAAATTATAAAAATATA
* * *
6728 ATAAAAATAAAAAAATATTT
1 A-AAAATTATAAAAATA-TA
** *
6748 AAATTTTATTAAAAATTAGAAA
1 AAAAATTA-TAAAAA-T--ATA
6770 AAAAATTATAAAAATAGTA
1 AAAAATTATAAAAATA-TA
*
6789 AAAAATGATAAAATATATA
1 AAAAATTATAAAA-ATATA
6808 GAATATAGAA
Statistics
Matches: 73, Mismatches: 16, Indels: 17
0.69 0.15 0.16
Matches are distributed among these distances:
18 15 0.21
19 33 0.45
20 11 0.15
21 7 0.10
22 6 0.08
23 1 0.01
ACGTcount: A:0.66, C:0.00, G:0.03, T:0.31
Consensus pattern (18 bp):
AAAAATTATAAAAATATA
Found at i:6851 original size:29 final size:29
Alignment explanation
Indices: 6819--6888 Score: 140
Period size: 29 Copynumber: 2.4 Consensus size: 29
6809 AATATAGAAA
6819 AAAATTATAAAATTTTATAAAGTCGTAAG
1 AAAATTATAAAATTTTATAAAGTCGTAAG
6848 AAAATTATAAAATTTTATAAAGTCGTAAG
1 AAAATTATAAAATTTTATAAAGTCGTAAG
6877 AAAATTATAAAA
1 AAAATTATAAAA
6889 AATGTAAAGA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 41 1.00
ACGTcount: A:0.56, C:0.03, G:0.09, T:0.33
Consensus pattern (29 bp):
AAAATTATAAAATTTTATAAAGTCGTAAG
Found at i:6891 original size:39 final size:38
Alignment explanation
Indices: 6848--6932 Score: 93
Period size: 39 Copynumber: 2.2 Consensus size: 38
6838 AAGTCGTAAG
* * *
6848 AAAATTATAA-AATTTTATAAAGTCGTAAGAAAATTATAA
1 AAAATTATAAGAAATATA-AAAGTCGTAAAAAAATTAT-A
*
6887 AAAATGTA-AAGAAATATAAAATTCGTAAAAAAATTATA
1 AAAAT-TATAAGAAATATAAAAGTCGTAAAAAAATTATA
6925 AAAATTAT
1 AAAATTAT
6933 CGTAAATTCA
Statistics
Matches: 39, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
37 2 0.05
38 6 0.15
39 24 0.62
40 7 0.18
ACGTcount: A:0.60, C:0.02, G:0.07, T:0.31
Consensus pattern (38 bp):
AAAATTATAAGAAATATAAAAGTCGTAAAAAAATTATA
Found at i:6930 original size:21 final size:21
Alignment explanation
Indices: 6856--6930 Score: 75
Period size: 21 Copynumber: 3.7 Consensus size: 21
6846 AGAAAATTAT
* * * *
6856 AAAATTTTATAAAGTCGTAAG
1 AAAATTATAAAAATTCGTAAA
*
6877 AAAATTATAAAAAAT-GTAAA
1 AAAATTATAAAAATTCGTAAA
*
6897 GAAA-TAT-AAAATTCGTAAA
1 AAAATTATAAAAATTCGTAAA
6916 AAAATTATAAAAATT
1 AAAATTATAAAAATT
6931 ATCGTAAATT
Statistics
Matches: 44, Mismatches: 7, Indels: 6
0.77 0.12 0.11
Matches are distributed among these distances:
18 5 0.11
19 11 0.25
20 10 0.23
21 18 0.41
ACGTcount: A:0.60, C:0.03, G:0.08, T:0.29
Consensus pattern (21 bp):
AAAATTATAAAAATTCGTAAA
Found at i:6960 original size:32 final size:31
Alignment explanation
Indices: 6905--6968 Score: 85
Period size: 32 Copynumber: 2.0 Consensus size: 31
6895 AAGAAATATA
* *
6905 AAATTCGTAAAAAAATTATAAAAATTATCGT
1 AAATTCATAAAAAAATTATAAAAAATATCGT
6936 AAATTCAT-AAAAAATTATAAAAAAAATATCGT
1 AAATTCATAAAAAAATTAT--AAAAAATATCGT
6968 A
1 A
6969 CCAAAAGAAG
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
30 10 0.34
31 7 0.24
32 12 0.41
ACGTcount: A:0.59, C:0.06, G:0.05, T:0.30
Consensus pattern (31 bp):
AAATTCATAAAAAAATTATAAAAAATATCGT
Found at i:7171 original size:19 final size:19
Alignment explanation
Indices: 7144--7211 Score: 59
Period size: 19 Copynumber: 3.5 Consensus size: 19
7134 TGTAATTTTT
*
7144 AATTCTTATAAAATTTTAC
1 AATTTTTATAAAATTTTAC
* *
7163 AATTTTTAT-AATTTTTTC
1 AATTTTTATAAAATTTTAC
*
7181 TAATTTTTAATAAAA-TTTAA
1 -AATTTTT-ATAAAATTTTAC
7201 ATATTTTTATA
1 A-ATTTTTATA
7212 TTTTTAATAA
Statistics
Matches: 39, Mismatches: 6, Indels: 8
0.74 0.11 0.15
Matches are distributed among these distances:
18 7 0.18
19 19 0.49
20 11 0.28
21 2 0.05
ACGTcount: A:0.40, C:0.04, G:0.00, T:0.56
Consensus pattern (19 bp):
AATTTTTATAAAATTTTAC
Found at i:7197 original size:39 final size:36
Alignment explanation
Indices: 7139--7216 Score: 95
Period size: 38 Copynumber: 2.1 Consensus size: 36
7129 TTTTATGTAA
*
7139 TTTTTAATTCTTATAAAATTTTACA-ATTTTTATAATT
1 TTTTTAATTCTTATAAAA-TTTAAATATTTTTAT-ATT
*
7176 TTTTCTAATTTTTAATAAAATTTAAATATTTTTATATT
1 TTTT-TAATTCTT-ATAAAATTTAAATATTTTTATATT
7214 TTT
1 TTT
7217 AATAAAATTT
Statistics
Matches: 36, Mismatches: 2, Indels: 5
0.84 0.05 0.12
Matches are distributed among these distances:
37 4 0.11
38 18 0.50
39 14 0.39
ACGTcount: A:0.35, C:0.04, G:0.00, T:0.62
Consensus pattern (36 bp):
TTTTTAATTCTTATAAAATTTAAATATTTTTATATT
Found at i:7207 original size:28 final size:28
Alignment explanation
Indices: 7167--7246 Score: 92
Period size: 28 Copynumber: 2.8 Consensus size: 28
7157 TTTTACAATT
*
7167 TTTATAATTTTTTCTAATTTTTAATAAAA
1 TTTA-AATATTTTCTAATTTTTAATAAAA
7196 TTTAAATATTTT-TATATTTTTAATAAAA
1 TTTAAATATTTTCTA-ATTTTTAATAAAA
*
7224 TTT-AATAATTTTCATAACTTTTA
1 TTTAAAT-ATTTTC-TAATTTTTA
7247 TTGATTTTTA
Statistics
Matches: 45, Mismatches: 2, Indels: 8
0.82 0.04 0.15
Matches are distributed among these distances:
27 5 0.11
28 28 0.62
29 10 0.22
30 2 0.04
ACGTcount: A:0.39, C:0.04, G:0.00, T:0.57
Consensus pattern (28 bp):
TTTAAATATTTTCTAATTTTTAATAAAA
Found at i:7556 original size:85 final size:88
Alignment explanation
Indices: 7410--7609 Score: 254
Period size: 85 Copynumber: 2.3 Consensus size: 88
7400 AAAACATGTG
* * *
7410 CTTATTTGCTTTTTTTTTTGAAAAAGTTTGAAGGCCTTTTTTATACATTTTGAAAGTTCAAGT-T
1 CTTAATTG-TTTTTTTTTTGAAAAAGTTTGAAGGCATTTTTTATACATTTTGAAAGGTCAAGTCT
* *
7474 CTCAAGTGAGTG-AAAAAAAAGGGA
65 C-CAACTGAGTGCAAAAAAAAGGAA
*
7498 CTTAATTGTTTTTTTTTTGAAAAA-TTTG-AGGCATTTTTTATGCATTTTGAAAGGTCAAGTCTC
1 CTTAATTGTTTTTTTTTTGAAAAAGTTTGAAGGCATTTTTTATACATTTTGAAAGGTCAAGTCTC
*
7561 CAACTGATTGCAAAAAAAAGGAA
66 CAACTGAGTGCAAAAAAAAGGAA
*
7584 ATTAA----TTTTTTTTTGAAAAAGTTTGA
1 CTTAATTGTTTTTTTTTTGAAAAAGTTTGA
7610 GACTTTTTAC
Statistics
Matches: 100, Mismatches: 8, Indels: 12
0.83 0.07 0.10
Matches are distributed among these distances:
82 15 0.15
83 4 0.04
85 37 0.37
86 21 0.21
87 16 0.16
88 7 0.07
ACGTcount: A:0.33, C:0.09, G:0.17, T:0.42
Consensus pattern (88 bp):
CTTAATTGTTTTTTTTTTGAAAAAGTTTGAAGGCATTTTTTATACATTTTGAAAGGTCAAGTCTC
CAACTGAGTGCAAAAAAAAGGAA
Found at i:18377 original size:43 final size:43
Alignment explanation
Indices: 18326--18638 Score: 482
Period size: 43 Copynumber: 7.3 Consensus size: 43
18316 TTTTTTCTAA
*
18326 AAACGCCGCTAAAGACCAAGACCTTTAGCGGAGCTTTTCCCAC
1 AAACGCCGCTAAAGACCAAGACCTTTAGCGGCGCTTTTCCCAC
*
18369 AAACGCCGCTAAAGACCAAGACCTTTAGCGGCGTTTTTCCCAC
1 AAACGCCGCTAAAGACCAAGACCTTTAGCGGCGCTTTTCCCAC
* * * *
18412 AAACGTCGCTAAATACCAAGACCTTTAGCGGCGCTTTCCCCAA
1 AAACGCCGCTAAAGACCAAGACCTTTAGCGGCGCTTTTCCCAC
*
18455 AAACGCCGCTAAAGACCAAGACCTTTAGCGGTGCTTTTCCCAC
1 AAACGCCGCTAAAGACCAAGACCTTTAGCGGCGCTTTTCCCAC
* * * * *
18498 AAAGGCCGCTAAAGACCAAGACCTTTAGTGGCGCTTTTACTAA
1 AAACGCCGCTAAAGACCAAGACCTTTAGCGGCGCTTTTCCCAC
* * *
18541 AAACGCCGCTAAAGACCAAAACCTTTAACGACGCTTTTCCCAC
1 AAACGCCGCTAAAGACCAAGACCTTTAGCGGCGCTTTTCCCAC
*
18584 AAAGGCCGCTAAAGACCAAGACCTTTAGCGGCGCTTTTCCCAC
1 AAACGCCGCTAAAGACCAAGACCTTTAGCGGCGCTTTTCCCAC
18627 AAACGCCGCTAA
1 AAACGCCGCTAA
18639 GAACATGACA
Statistics
Matches: 239, Mismatches: 31, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
43 239 1.00
ACGTcount: A:0.31, C:0.32, G:0.18, T:0.20
Consensus pattern (43 bp):
AAACGCCGCTAAAGACCAAGACCTTTAGCGGCGCTTTTCCCAC
Found at i:18890 original size:18 final size:18
Alignment explanation
Indices: 18867--18926 Score: 52
Period size: 18 Copynumber: 3.4 Consensus size: 18
18857 ATTAAACAAG
18867 TTACATTCTATATTAGAA
1 TTACATTCTATATTAGAA
*** * *
18885 TTACATAAGAAAATT-G-T
1 TTACAT-TCTATATTAGAA
18902 TTACATTCTATATTAGAA
1 TTACATTCTATATTAGAA
18920 TTACATT
1 TTACATT
18927 AGAATACTTA
Statistics
Matches: 29, Mismatches: 10, Indels: 6
0.64 0.22 0.13
Matches are distributed among these distances:
16 4 0.14
17 7 0.24
18 14 0.48
19 4 0.14
ACGTcount: A:0.40, C:0.10, G:0.07, T:0.43
Consensus pattern (18 bp):
TTACATTCTATATTAGAA
Found at i:23595 original size:106 final size:106
Alignment explanation
Indices: 23368--23613 Score: 309
Period size: 106 Copynumber: 2.3 Consensus size: 106
23358 GTCTATAGAT
** * **
23368 CTATAGCGGCATTTTTTTAAAAGCGCCGCTAATGCCACCAAAGCTTAATGGCGTTATGCTTAATT
1 CTATAGCGGCATTTTTCAAAAAGCGCCGCTAATGCCACCAAAGCTCAACAGCGTTATGCTTAATT
* * * *
23433 CTTTTTGCAGCGTTTTTCAAAAAGCACTGTTAATGCTTGAT
66 CTTTTTGCAGCGTTTTTCAAAAAGCACCGCTAATGCTCGAC
*
23474 CTATAGCGGCATTTTTCAAAAAGCGCCGCTAATGCCACCAAAGCTCAACAGCGTTGTGCTTAATT
1 CTATAGCGGCATTTTTCAAAAAGCGCCGCTAATGCCACCAAAGCTCAACAGCGTTATGCTTAATT
* ** *
23539 -TTTTTGC-GATGTTTTTCAAAAAGTGCCGCTAGTGCTCGAC
66 CTTTTTGCAG-CGTTTTTCAAAAAGCACCGCTAATGCTCGAC
* *
23579 CTATAGCGCCACTTTTTGAAAAA-CGCCGCTAATGC
1 CTATAGCGGCA-TTTTTCAAAAAGCGCCGCTAATGC
23614 TAGTTCTATA
Statistics
Matches: 122, Mismatches: 16, Indels: 5
0.85 0.11 0.03
Matches are distributed among these distances:
104 1 0.01
105 52 0.43
106 69 0.57
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.32
Consensus pattern (106 bp):
CTATAGCGGCATTTTTCAAAAAGCGCCGCTAATGCCACCAAAGCTCAACAGCGTTATGCTTAATT
CTTTTTGCAGCGTTTTTCAAAAAGCACCGCTAATGCTCGAC
Found at i:23623 original size:40 final size:40
Alignment explanation
Indices: 23549--23704 Score: 170
Period size: 40 Copynumber: 3.9 Consensus size: 40
23539 TTTTTGCGAT
* * * * *
23549 GTTTTTCAAAAAGTGCCGCTAGTGCTCGACCTATAGCGCCA
1 GTTTTTCAAAAAGCGCCGCTAATGCTAGATCTATAGCG-GA
* * *
23590 CTTTTTGAAAAA-CGCCGCTAATGCTAGTTCTATAGCGGA
1 GTTTTTCAAAAAGCGCCGCTAATGCTAGATCTATAGCGGA
* * * *
23629 GTTCTTCAAAAAGCGCTGCTAATGCTTGATCTATAGCGGT
1 GTTTTTCAAAAAGCGCCGCTAATGCTAGATCTATAGCGGA
* *
23669 GTTTTTCAAAAAGCGCCGCTAATGCGATATCTATAG
1 GTTTTTCAAAAAGCGCCGCTAATGCTAGATCTATAG
23705 TGGCATTTTT
Statistics
Matches: 94, Mismatches: 20, Indels: 3
0.80 0.17 0.03
Matches are distributed among these distances:
39 10 0.11
40 74 0.79
41 10 0.11
ACGTcount: A:0.27, C:0.22, G:0.21, T:0.30
Consensus pattern (40 bp):
GTTTTTCAAAAAGCGCCGCTAATGCTAGATCTATAGCGGA
Found at i:28319 original size:23 final size:23
Alignment explanation
Indices: 28289--28343 Score: 101
Period size: 23 Copynumber: 2.4 Consensus size: 23
28279 TTGAAGGTCC
28289 ATCTACAAGCTTATGGAAACATA
1 ATCTACAAGCTTATGGAAACATA
28312 ATCTACAAGCTTATGGAAACATA
1 ATCTACAAGCTTATGGAAACATA
*
28335 ATCTTCAAG
1 ATCTACAAG
28344 GATATGCAAT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
23 31 1.00
ACGTcount: A:0.42, C:0.18, G:0.13, T:0.27
Consensus pattern (23 bp):
ATCTACAAGCTTATGGAAACATA
Found at i:28391 original size:21 final size:19
Alignment explanation
Indices: 28344--28418 Score: 123
Period size: 19 Copynumber: 3.8 Consensus size: 19
28334 AATCTTCAAG
28344 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
28363 GGTATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
28382 GATATATGCAATCTTAGATAT
1 G--ATATGCAATCTTAGATAT
28403 GATATGCAATCTTAGA
1 GATATGCAATCTTAGA
28419 AGATATGATT
Statistics
Matches: 52, Mismatches: 2, Indels: 4
0.90 0.03 0.07
Matches are distributed among these distances:
19 34 0.65
21 18 0.35
ACGTcount: A:0.36, C:0.11, G:0.17, T:0.36
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:28444 original size:22 final size:22
Alignment explanation
Indices: 28357--28441 Score: 54
Period size: 19 Copynumber: 4.0 Consensus size: 22
28347 ATGCAATCTT
* *
28357 AGATATGGTATGCAATCTTAG-
1 AGATATGATATGCAATATTAGA
* *
28378 ATATGAT-ATATGCAATCTT---
1 AGAT-ATGATATGCAATATTAGA
*
28397 AGATATGATATGCAATCTTAGA
1 AGATATGATATGCAATATTAGA
* *
28419 AGATATGATTTTGTAATATTAGA
1 AGATATGA-TATGCAATATTAGA
28442 GATTTAATTT
Statistics
Matches: 52, Mismatches: 6, Indels: 10
0.76 0.09 0.15
Matches are distributed among these distances:
18 2 0.04
19 15 0.29
21 14 0.27
22 10 0.19
23 11 0.21
ACGTcount: A:0.38, C:0.07, G:0.18, T:0.38
Consensus pattern (22 bp):
AGATATGATATGCAATATTAGA
Found at i:34121 original size:18 final size:19
Alignment explanation
Indices: 34069--34124 Score: 71
Period size: 19 Copynumber: 3.1 Consensus size: 19
34059 GATCCAATTC
*
34069 AAAA-AAAAACCCAAAAAA
1 AAAACAAAAACACAAAAAA
34087 AAAACAAAAACACAAAAAA
1 AAAACAAAAACACAAAAAA
* *
34106 AAACCAAAAA-AGAAAAAA
1 AAAACAAAAACACAAAAAA
34124 A
1 A
34125 TCAAAATCAA
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
18 12 0.35
19 22 0.65
ACGTcount: A:0.84, C:0.14, G:0.02, T:0.00
Consensus pattern (19 bp):
AAAACAAAAACACAAAAAA
Found at i:34136 original size:20 final size:20
Alignment explanation
Indices: 34113--34151 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
34103 AAAAAACCAA
34113 AAAAGAAAAAAATCAAAATC
1 AAAAGAAAAAAATCAAAATC
** *
34133 AAAATTAAAAAATGAAAAT
1 AAAAGAAAAAAATCAAAAT
34152 GACAAAAAGA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.74, C:0.05, G:0.05, T:0.15
Consensus pattern (20 bp):
AAAAGAAAAAAATCAAAATC
Found at i:35493 original size:44 final size:44
Alignment explanation
Indices: 35430--35837 Score: 473
Period size: 44 Copynumber: 9.7 Consensus size: 44
35420 CACAAAGCTT
*
35430 TATCTCCCTAGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
* *
35474 TATCTCCCTAGTCAGCAGTGGAATA----G--G--TG-AA-TCA
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
* * * *
35508 TATCTCCTTGGTTAGCAGTGGAATAGGTTAAAGATTGTGAGTCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
* * *
35552 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTTTGAGTCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
*
35596 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTTC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
* *
35640 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAGTCG
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
* *
35684 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTTC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
35728 TATCTCCCTGGTCAGCAGTGGAATA----G--G--TG-AA-TCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
* *
35762 TATCTCCCTAGTCGGCAGTGGAATAGGTTGAAGATTGTGAA-TCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGT-AAGTCC
* *
35806 TAGCTCCCTGAG-CAGCAGTGGAGTAGGTTGAA
1 TATCTCCCTG-GTCAGCAGTGGAATAGGTTGAA
35838 AATTATAGAT
Statistics
Matches: 312, Mismatches: 31, Indels: 42
0.81 0.08 0.11
Matches are distributed among these distances:
34 49 0.16
35 4 0.01
36 4 0.01
38 3 0.01
40 4 0.01
42 4 0.01
43 1 0.00
44 242 0.78
45 1 0.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (44 bp):
TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
Found at i:35856 original size:122 final size:122
Alignment explanation
Indices: 35639--35858 Score: 318
Period size: 122 Copynumber: 1.8 Consensus size: 122
35629 ATTGTAAGTT
* * * * *
35639 CTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAGTCGTATCTCCCTGGTCAGTAGTG
1 CTATCTCCCTAGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTAGCTCCCTGGTCAGCAGTG
* * *
35704 GAATAGGTTGAAGATTGTAAGTTCTATCTCCCTGGTCAGCAGTGGAATAGGTGAATC
66 GAATAGGTTGAAAATTATAAGATCTATCTCCCTGGTCAGCAGTGGAATAGGTGAATC
*
35761 CTATCTCCCTAGTCGGCAGTGGAATAGGTTGAAGATTGTGAATCCTAGCTCCCTGAG-CAGCAGT
1 CTATCTCCCTAGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTAGCTCCCTG-GTCAGCAGT
*
35825 GGAGTAGGTTGAAAATTAT-AGATCTTATCTCCCT
65 GGAATAGGTTGAAAATTATAAGATC-TATCTCCCT
35859 AAGAAGTAGT
Statistics
Matches: 86, Mismatches: 10, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
121 4 0.05
122 81 0.94
123 1 0.01
ACGTcount: A:0.25, C:0.19, G:0.27, T:0.30
Consensus pattern (122 bp):
CTATCTCCCTAGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTAGCTCCCTGGTCAGCAGTG
GAATAGGTTGAAAATTATAAGATCTATCTCCCTGGTCAGCAGTGGAATAGGTGAATC
Found at i:35857 original size:44 final size:43
Alignment explanation
Indices: 35755--35859 Score: 122
Period size: 44 Copynumber: 2.4 Consensus size: 43
35745 GTGGAATAGG
* * * *
35755 TGAATCCTATCTCCCTAGTCGGCAGTGGAATAGGTTGAAGATTG
1 TGAATCCTATCTCCCTAG-CAGCAGTGGAGTAGGTTGAAAATTA
*
35799 TGAATCCTAGCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAATTA
1 TGAATCCTATCTCCCT-AGCAGCAGTGGAGTAGGTTGAAAATTA
*
35843 T-AGATCTTATCTCCCTA
1 TGA-ATCCTATCTCCCTA
35860 AGAAGTAGTG
Statistics
Matches: 52, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
43 2 0.04
44 48 0.92
45 2 0.04
ACGTcount: A:0.27, C:0.20, G:0.24, T:0.30
Consensus pattern (43 bp):
TGAATCCTATCTCCCTAGCAGCAGTGGAGTAGGTTGAAAATTA
Found at i:35870 original size:44 final size:44
Alignment explanation
Indices: 35776--35872 Score: 106
Period size: 44 Copynumber: 2.2 Consensus size: 44
35766 TCCCTAGTCG
* * * * *
35776 GCAGTGGAATAGGTTGAAGATTGTGAATCCTAGCTCCCTGAGCA
1 GCAGTGGAGTAGGTTGAAAATTATGAATCCTAGCTCCCTAAGAA
* *
35820 GCAGTGGAGTAGGTTGAAAATTAT-AGATCTTATCTCCCTAAGAA
1 GCAGTGGAGTAGGTTGAAAATTATGA-ATCCTAGCTCCCTAAGAA
*
35864 GTAGTGGAG
1 GCAGTGGAG
35873 AAAATCAAAG
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
43 1 0.02
44 43 0.98
ACGTcount: A:0.30, C:0.14, G:0.29, T:0.27
Consensus pattern (44 bp):
GCAGTGGAGTAGGTTGAAAATTATGAATCCTAGCTCCCTAAGAA
Found at i:35942 original size:88 final size:88
Alignment explanation
Indices: 35848--36312 Score: 306
Period size: 88 Copynumber: 5.3 Consensus size: 88
35838 AATTATAGAT
* * *
35848 CTTATCTCCCTAAGAAGTAGTGGAGAAAATCAAAGATGGCGAATCTTATCTTCCCAAGGTAGTAG
1 CTTATCTCCCTAAGCAGTAGTGGAGAAGATCGAAGATGGCGAATCTTATCTTCCCAAGGTAGTAG
35913 GGAAGCATATTTAAGCCACTAGC
66 GGAAGCATATTTAAGCCACTAGC
* * * * * * * *
35936 CTTATCTCCCTGAGCA-TCAGTGGA-ATAGGTTGAAGATTGTGAATCCTATC-TCCC-TGAGCAG
1 CTTATCTCCCTAAGCAGT-AGTGGAGA-AGATCGAAGATGGCGAATCTTATCTTCCCAAG-GTAG
* * ** * *** *
35997 CAGTGG-AGTAGGTTGAAAATTA-TAGAT
63 TAG-GGAAGCATATT-TAAGCCACTAG-C
* * *
36024 CTTATCTCCCTAAGAAGTAGTGGAGAAAATCAAAGATGGCGAATCTTATCTTCCCAAGGTAGTAG
1 CTTATCTCCCTAAGCAGTAGTGGAGAAGATCGAAGATGGCGAATCTTATCTTCCCAAGGTAGTAG
36089 GGAAGCATATTTAAGCCACTAGC
66 GGAAGCATATTTAAGCCACTAGC
* * * * * * * ** * * * *
36112 ATTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAGATTGTAAACCTTATC-TCAC-TGAGCAGTA
1 CTTATCTCCCTAAGCAGTAGTGGAGAAGATCGAAGATGGCGAATCTTATCTTCCCAAG-GTAGTA
* *** *
36175 GTGG-A-C-TAGGTTGAAAATTAC-AGAT
65 G-GGAAGCATA--TT-TAAGCCACTAG-C
* * *
36200 CTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTCCTAAGGTAGTAG
1 CTTATCTCCCTAAGCAGTAGTGGAGAAGATCGAAGATGGCGAATCTTATCTTCCCAAGGTAGTAG
*
36265 GGAAGCAGATTTAAGCCACTAGC
66 GGAAGCATATTTAAGCCACTAGC
* * *
36288 TTTATCTCCCTGAGCAGCAGTGGAG
1 CTTATCTCCCTAAGCAGTAGTGGAG
36313 TAGGTTGAAA
Statistics
Matches: 268, Mismatches: 85, Indels: 48
0.67 0.21 0.12
Matches are distributed among these distances:
85 2 0.01
86 3 0.01
87 33 0.12
88 194 0.72
89 32 0.12
90 3 0.01
91 1 0.00
ACGTcount: A:0.31, C:0.19, G:0.24, T:0.26
Consensus pattern (88 bp):
CTTATCTCCCTAAGCAGTAGTGGAGAAGATCGAAGATGGCGAATCTTATCTTCCCAAGGTAGTAG
GGAAGCATATTTAAGCCACTAGC
Found at i:35944 original size:254 final size:254
Alignment explanation
Indices: 35429--36009 Score: 603
Period size: 254 Copynumber: 2.3 Consensus size: 254
35419 TCACAAAGCT
* * *
35429 TTATCTCCCTAGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTAGTCAGCAGTG
1 TTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTGGTCAGCAGTG
* * * * *
35494 GAATAGGTGAATCATATCTCCTTGGTTAGCAGTGGAATAGGTTAAAGATTGTGAGTCCTATCTCC
66 GAATAGGTGAATCATATCTCCCTAGTCAGCAGTGGAATAGGTTAAAGATTGTGAATCCTAGCTCC
* * * * * **
35559 CTGGTCAGTAGTGGAATAGGTTGAAGATTTTGAGTCCTATCTCCCTGGTCAGCAGTGGAATAGGT
131 CTGGTCAGCAGTGGAATAGGTTGAAAATTTAGAGTCCTATCTCCCTAGTAAGCAGTGGAATAAAT
** * * * * * *** *
35624 TGAAGATTGTAAGTTCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAGTC
196 CAAAGATGGGAAGTTCTATCTCCCAGGTCAGCAGTGGAACAGATTGAAGACACTGAGCC
* *
35683 GTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTTCTATCTCCCTGGTCAGCAGTG
1 TTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTGGTCAGCAGTG
* * *
35748 GAATAGGTGAATCCTATCTCCCTAGTCGGCAGTGGAATAGGTTGAAGATTGTGAATCCTAGCTCC
66 GAATAGGTGAATCATATCTCCCTAGTCAGCAGTGGAATAGGTTAAAGATTGTGAATCCTAGCTCC
* * *
35813 CTGAG-CAGCAGTGGAGTAGGTTGAAAATTATAGA-TCTTATCTCCCTAAG-AAGTAGTGGAGA-
131 CTG-GTCAGCAGTGGAATAGGTTGAAAATT-TAGAGTCCTATCTCCCT-AGTAAGCAGTGGA-AT
* * * *
35874 AAATCAAAGATGGCGAA--TCTTATCTTCCCAAGGT-AGTAG-GGAAGCATATTTAAGCCACT-A
192 AAATCAAAGATGG-GAAGTTC-TATC-TCCC-AGGTCAGCAGTGGAA-CAGATTGAAGACACTGA
35934 GCC
252 GCC
35937 TTATCTCCCTGAG-CA-TCAGTGGAATAGGTTGAAGATTGTGAA-TCCTATCTCCCTGAG-CAGC
1 TTATCTCCCTG-GTCAGT-AGTGGAATAGGTTGAAGATTGT-AAGTCCTATCTCCCTG-GTCAGC
*
35998 AGTGGAGTAGGT
62 AGTGGAATAGGT
36010 TGAAAATTAT
Statistics
Matches: 273, Mismatches: 41, Indels: 26
0.80 0.12 0.08
Matches are distributed among these distances:
253 3 0.01
254 240 0.88
255 27 0.10
256 3 0.01
ACGTcount: A:0.27, C:0.18, G:0.26, T:0.29
Consensus pattern (254 bp):
TTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTGGTCAGCAGTG
GAATAGGTGAATCATATCTCCCTAGTCAGCAGTGGAATAGGTTAAAGATTGTGAATCCTAGCTCC
CTGGTCAGCAGTGGAATAGGTTGAAAATTTAGAGTCCTATCTCCCTAGTAAGCAGTGGAATAAAT
CAAAGATGGGAAGTTCTATCTCCCAGGTCAGCAGTGGAACAGATTGAAGACACTGAGCC
Found at i:36030 original size:44 final size:44
Alignment explanation
Indices: 35936--36048 Score: 138
Period size: 44 Copynumber: 2.6 Consensus size: 44
35926 AGCCACTAGC
* * * *
35936 CTTATCTCCCTGAGCATCAGTGGAATAGGTTGAAGATTGTGAAT
1 CTTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAATTATGAAT
*
35980 CCTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAATTAT-AGAT
1 CTTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAATTATGA-AT
* * *
36024 CTTATCTCCCTAAGAAGTAGTGGAG
1 CTTATCTCCCTGAGCAGCAGTGGAG
36049 AAAATCAAAG
Statistics
Matches: 59, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
43 1 0.02
44 58 0.98
ACGTcount: A:0.28, C:0.18, G:0.25, T:0.29
Consensus pattern (44 bp):
CTTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAATTATGAAT
Found at i:36056 original size:176 final size:176
Alignment explanation
Indices: 35762--36321 Score: 917
Period size: 176 Copynumber: 3.2 Consensus size: 176
35752 AGGTGAATCC
* *
35762 TATCTCCCT-AGTCGGCAGTGGAATAGGTTGAAGATTGTGAATCCTAGCTCCCTGAGCAGCAGTG
1 TATCTCCCTGAG-CAGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGAGCAGCAGTG
35826 GAGTAGGTTGAAAATTATAGATCTTATCTCCCTAAGAAGTAGTGGAGAAAATCAAAGATGGCGAA
65 GAGTAGGTTGAAAATTATAGATCTTATCTCCCTAAGAAGTAGTGGAGAAAATCAAAGATGGCGAA
*
35891 TCTTATCTTCCCAAGGTAGTAGGGAAGCATATTTAAGCCACTAGCCT
130 TCTTATCTTCCCAAGGTAGTAGGGAAGCATATTTAAGCCACTAGCAT
*
35938 TATCTCCCTGAGCATCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGAGCAGCAGTGG
1 TATCTCCCTGAGCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGAGCAGCAGTGG
36003 AGTAGGTTGAAAATTATAGATCTTATCTCCCTAAGAAGTAGTGGAGAAAATCAAAGATGGCGAAT
66 AGTAGGTTGAAAATTATAGATCTTATCTCCCTAAGAAGTAGTGGAGAAAATCAAAGATGGCGAAT
36068 CTTATCTTCCCAAGGTAGTAGGGAAGCATATTTAAGCCACTAGCAT
131 CTTATCTTCCCAAGGTAGTAGGGAAGCATATTTAAGCCACTAGCAT
* * * *
36114 TATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAGATTGT-AAACCTTATCTCACTGAGCAGTAGTG
1 TATCTCCCTGAGCAGCAGTGGAATAGGTTGAAGATTGTGAATCC-TATCTCCCTGAGCAGCAGTG
* * * * * * *
36178 GACTAGGTTGAAAATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCGAA
65 GAGTAGGTTGAAAATTATAGATCTTATCTCCCTAAGAAGTAGTGGAGAAAATCAAAGATGGCGAA
* * *
36243 TCTTATCTTCCTAAGGTAGTAGGGAAGCAGATTTAAGCCACTAGCTT
130 TCTTATCTTCCCAAGGTAGTAGGGAAGCATATTTAAGCCACTAGCAT
*
36290 TATCTCCCTGAGCAGCAGTGGAGTAGGTTGAA
1 TATCTCCCTGAGCAGCAGTGGAATAGGTTGAA
36322 AATTACAGAT
Statistics
Matches: 363, Mismatches: 19, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
175 4 0.01
176 357 0.98
177 2 0.01
ACGTcount: A:0.30, C:0.18, G:0.25, T:0.27
Consensus pattern (176 bp):
TATCTCCCTGAGCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGAGCAGCAGTGG
AGTAGGTTGAAAATTATAGATCTTATCTCCCTAAGAAGTAGTGGAGAAAATCAAAGATGGCGAAT
CTTATCTTCCCAAGGTAGTAGGGAAGCATATTTAAGCCACTAGCAT
Found at i:36178 original size:44 final size:44
Alignment explanation
Indices: 36113--36224 Score: 143
Period size: 44 Copynumber: 2.5 Consensus size: 44
36103 GCCACTAGCA
* * **
36113 TTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAGATTGTAAACC
1 TTATCTCCCTGAGCAGTAGTGGAGTAGGTTGAAAATTACAAACC
* * * *
36157 TTATCTCACTGAGCAGTAGTGGACTAGGTTGAAAATTACAGATC
1 TTATCTCCCTGAGCAGTAGTGGAGTAGGTTGAAAATTACAAACC
*
36201 TTATCTCCCTAAGCAGTAGTGGAG
1 TTATCTCCCTGAGCAGTAGTGGAG
36225 CAGATCGAAG
Statistics
Matches: 57, Mismatches: 11, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
44 57 1.00
ACGTcount: A:0.29, C:0.18, G:0.25, T:0.29
Consensus pattern (44 bp):
TTATCTCCCTGAGCAGTAGTGGAGTAGGTTGAAAATTACAAACC
Found at i:37037 original size:21 final size:19
Alignment explanation
Indices: 36991--37065 Score: 132
Period size: 19 Copynumber: 3.8 Consensus size: 19
36981 AATCTTCAAG
36991 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
37010 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
37029 GATATATGCAATCTTAGATAT
1 G--ATATGCAATCTTAGATAT
37050 GATATGCAATCTTAGA
1 GATATGCAATCTTAGA
37066 AGATATGATT
Statistics
Matches: 54, Mismatches: 0, Indels: 4
0.93 0.00 0.07
Matches are distributed among these distances:
19 35 0.65
21 19 0.35
ACGTcount: A:0.37, C:0.11, G:0.16, T:0.36
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:37087 original size:23 final size:22
Alignment explanation
Indices: 36991--37088 Score: 95
Period size: 19 Copynumber: 4.7 Consensus size: 22
36981 AATCTTCAAG
36991 GATATGCAATCTT---AGATAT
1 GATATGCAATCTTAGAAGATAT
*
37010 GATATGCAATCTTAG-ATATGAT
1 GATATGCAATCTTAGAAGAT-AT
37032 -ATATGCAATCTT---AGATAT
1 GATATGCAATCTTAGAAGATAT
37050 GATATGCAATCTTAGAAGATAT
1 GATATGCAATCTTAGAAGATAT
* *
37072 GATTTTGTAATCTTAGA
1 GA-TATGCAATCTTAGA
37089 GATTTAATTT
Statistics
Matches: 67, Mismatches: 4, Indels: 12
0.81 0.05 0.14
Matches are distributed among these distances:
18 2 0.03
19 28 0.42
21 15 0.22
22 10 0.15
23 12 0.18
ACGTcount: A:0.37, C:0.09, G:0.16, T:0.38
Consensus pattern (22 bp):
GATATGCAATCTTAGAAGATAT
Found at i:37808 original size:3 final size:3
Alignment explanation
Indices: 37802--37832 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
37792 TTATCTTTTC
37802 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
37833 GTGTTCAATT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
ATT
Found at i:42430 original size:104 final size:105
Alignment explanation
Indices: 42238--42455 Score: 330
Period size: 104 Copynumber: 2.1 Consensus size: 105
42228 ATGGATCTAC
42238 AATTTTACAAGTAAGACCTTTTAGTACCTTGTTTTAGTCTTTTACGCAATCACATTTTATAATTA
1 AATTTT-CAAGTAAGACCTTTTAGTACCTTGTTTTAGTCTTTTACGCAATCACATTTTATAATTA
* * *
42303 TTTTATAAAATTTTTATGCAATAGTCTCTATAGTCTTAATA
65 TATTATAAAATTTTTATGCAATAGTCACTATAGTCTAAATA
* * * *
42344 AATTTTCAA-TAAGACCTTTTATTACTTTGTTTTAGTCTTTTACGCACTCACATTTTATAATTCT
1 AATTTTCAAGTAAGACCTTTTAGTACCTTGTTTTAGTCTTTTACGCAATCACATTTTATAATTAT
* *
42408 ATTATAAATTTTTTATGTAATAGTCACTATAGTCTAAATA
66 ATTATAAAATTTTTATGCAATAGTCACTATAGTCTAAATA
*
42448 GATTTTCA
1 AATTTTCA
42456 GTACTATTTC
Statistics
Matches: 102, Mismatches: 10, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
104 93 0.91
105 3 0.03
106 6 0.06
ACGTcount: A:0.32, C:0.13, G:0.08, T:0.47
Consensus pattern (105 bp):
AATTTTCAAGTAAGACCTTTTAGTACCTTGTTTTAGTCTTTTACGCAATCACATTTTATAATTAT
ATTATAAAATTTTTATGCAATAGTCACTATAGTCTAAATA
Found at i:49038 original size:42 final size:43
Alignment explanation
Indices: 48954--49092 Score: 126
Period size: 42 Copynumber: 3.3 Consensus size: 43
48944 AGCAATCATG
* * *
48954 CTGGCACGTAAGTGTACCATC-AGATGTATCAAAGCAAATATA
1 CTGGCACGTAAGTGCACCATCGAGATATACCAAAGCAAATATA
*
48996 CTGGCACGTAAGTGCACCATCGA-ATATACCGAAG-AAATTATA
1 CTGGCACGTAAGTGCACCATCGAGATATACCAAAGCAAA-TATA
* * * **
49038 CTTGCACATAAGTGCATCATCG-GATA-ACTTGAAGCAAATATA
1 CTGGCACGTAAGTGCACCATCGAGATATAC-CAAAGCAAATATA
* *
49080 CTGGAACATAAGT
1 CTGGCACGTAAGT
49093 TCATCATCAG
Statistics
Matches: 82, Mismatches: 10, Indels: 10
0.80 0.10 0.10
Matches are distributed among these distances:
41 5 0.06
42 73 0.89
43 4 0.05
ACGTcount: A:0.38, C:0.19, G:0.19, T:0.24
Consensus pattern (43 bp):
CTGGCACGTAAGTGCACCATCGAGATATACCAAAGCAAATATA
Found at i:49098 original size:42 final size:42
Alignment explanation
Indices: 48985--49100 Score: 137
Period size: 42 Copynumber: 2.8 Consensus size: 42
48975 AGATGTATCA
* *
48985 AAGCAAATATACTGGCACGTAAGTGCACCATCGAATATACCG
1 AAGCAAATATACTGGCACATAAGTGCATCATCGAATATACCG
* * *
49027 AAG-AAATTATACTTGCACATAAGTGCATCATCGGATA-ACTTG
1 AAGCAAA-TATACTGGCACATAAGTGCATCATCGAATATAC-CG
* *
49069 AAGCAAATATACTGGAACATAAGTTCATCATC
1 AAGCAAATATACTGGCACATAAGTGCATCATC
49101 AGCTAAATTA
Statistics
Matches: 63, Mismatches: 8, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
41 5 0.08
42 55 0.87
43 3 0.05
ACGTcount: A:0.40, C:0.20, G:0.16, T:0.24
Consensus pattern (42 bp):
AAGCAAATATACTGGCACATAAGTGCATCATCGAATATACCG
Found at i:51626 original size:27 final size:27
Alignment explanation
Indices: 51583--51655 Score: 114
Period size: 27 Copynumber: 2.8 Consensus size: 27
51573 TTTTATCCCT
51583 ATTTTACCCC-AGT-AAATTTTTGATG
1 ATTTTACCCCTAGTAAAATTTTTGATG
*
51608 ATTTTACCCCTAATAAAATTTTTGATG
1 ATTTTACCCCTAGTAAAATTTTTGATG
*
51635 ATTTTACCCCTGGTAAAATTT
1 ATTTTACCCCTAGTAAAATTT
51656 CGAAAAAAAT
Statistics
Matches: 43, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
25 10 0.23
26 2 0.05
27 31 0.72
ACGTcount: A:0.30, C:0.16, G:0.10, T:0.44
Consensus pattern (27 bp):
ATTTTACCCCTAGTAAAATTTTTGATG
Found at i:52925 original size:18 final size:17
Alignment explanation
Indices: 52883--52926 Score: 52
Period size: 18 Copynumber: 2.5 Consensus size: 17
52873 TGTTGTTCGT
52883 TTTCAAAACATTATTCA
1 TTTCAAAACATTATTCA
* *
52900 TTTACAAATCGTTATTCAA
1 TTT-CAAAACATTATTC-A
52919 TTTCAAAA
1 TTTCAAAA
52927 TGTTTTCTTA
Statistics
Matches: 22, Mismatches: 3, Indels: 3
0.79 0.11 0.11
Matches are distributed among these distances:
17 3 0.14
18 15 0.68
19 4 0.18
ACGTcount: A:0.41, C:0.16, G:0.02, T:0.41
Consensus pattern (17 bp):
TTTCAAAACATTATTCA
Found at i:55820 original size:30 final size:30
Alignment explanation
Indices: 55781--55842 Score: 97
Period size: 30 Copynumber: 2.1 Consensus size: 30
55771 ACTTATTTTA
55781 TTGTAAATTTTGTTATTATTTTAAAGACAT
1 TTGTAAATTTTGTTATTATTTTAAAGACAT
* * *
55811 TTGTTAATTTTGTTATTATTTTAGAGGCAT
1 TTGTAAATTTTGTTATTATTTTAAAGACAT
55841 TT
1 TT
55843 TTTTATAAAG
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.27, C:0.03, G:0.13, T:0.56
Consensus pattern (30 bp):
TTGTAAATTTTGTTATTATTTTAAAGACAT
Found at i:55991 original size:12 final size:12
Alignment explanation
Indices: 55968--56001 Score: 61
Period size: 12 Copynumber: 2.9 Consensus size: 12
55958 TATATATTTT
55968 AAAATT-ATATA
1 AAAATTAATATA
55979 AAAATTAATATA
1 AAAATTAATATA
55991 AAAATTAATAT
1 AAAATTAATAT
56002 GGGCGGGCCA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
11 6 0.27
12 16 0.73
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (12 bp):
AAAATTAATATA
Found at i:69370 original size:17 final size:16
Alignment explanation
Indices: 69317--69395 Score: 80
Period size: 15 Copynumber: 5.2 Consensus size: 16
69307 TTGGTTCTTG
69317 ATAT-ATTTAAA-TTT
1 ATATAATTTAAATTTT
69331 A-A-AATTT-AATTTT
1 ATATAATTTAAATTTT
* *
69344 TTATATTTTAAATTTT
1 ATATAATTTAAATTTT
*
69360 AGTATAGTTTAAATTTT
1 A-TATAATTTAAATTTT
69377 -TATAATTTAAATTTT
1 ATATAATTTAAATTTT
69392 ATAT
1 ATAT
69396 TTTTATAATG
Statistics
Matches: 53, Mismatches: 5, Indels: 12
0.76 0.07 0.17
Matches are distributed among these distances:
12 2 0.04
13 8 0.15
14 2 0.04
15 18 0.34
16 9 0.17
17 14 0.26
ACGTcount: A:0.39, C:0.00, G:0.03, T:0.58
Consensus pattern (16 bp):
ATATAATTTAAATTTT
Found at i:72602 original size:18 final size:19
Alignment explanation
Indices: 72579--72617 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
72569 TCAATTTGAC
*
72579 AAAATA-GAAAATTTTAGA
1 AAAATATGAAAATTTGAGA
72597 AAAATATGAAAATTTGAGA
1 AAAATATGAAAATTTGAGA
72616 AA
1 AA
72618 TAGGGGTCAC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 6 0.32
19 13 0.68
ACGTcount: A:0.62, C:0.00, G:0.13, T:0.26
Consensus pattern (19 bp):
AAAATATGAAAATTTGAGA
Found at i:73921 original size:18 final size:17
Alignment explanation
Indices: 73898--73951 Score: 72
Period size: 18 Copynumber: 3.0 Consensus size: 17
73888 AAATTGTGTC
73898 ATTCATTTCCAAAACATT
1 ATTCATTT-CAAAACATT
*
73916 ATTCATTTACAAATCATT
1 ATTCATTT-CAAAACATT
73934 ATTCAATTTCAAAACATT
1 ATTC-ATTTCAAAACATT
73952 TTTTTCATTG
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
18 28 0.88
19 4 0.12
ACGTcount: A:0.41, C:0.19, G:0.00, T:0.41
Consensus pattern (17 bp):
ATTCATTTCAAAACATT
Found at i:82221 original size:12 final size:12
Alignment explanation
Indices: 82204--82231 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
82194 AAGTATTTTA
82204 GAGAGATATTAG
1 GAGAGATATTAG
82216 GAGAGATATTAG
1 GAGAGATATTAG
82228 GAGA
1 GAGA
82232 TTTAAGAGTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.43, C:0.00, G:0.36, T:0.21
Consensus pattern (12 bp):
GAGAGATATTAG
Found at i:83030 original size:46 final size:46
Alignment explanation
Indices: 82973--83064 Score: 175
Period size: 46 Copynumber: 2.0 Consensus size: 46
82963 AAGGGAAAAG
82973 TTAAAAGATAGAAAATATAAGTTTTCTTTTCATAGATATGCCTAGT
1 TTAAAAGATAGAAAATATAAGTTTTCTTTTCATAGATATGCCTAGT
*
83019 TTAATAGATAGAAAATATAAGTTTTCTTTTCATAGATATGCCTAGT
1 TTAAAAGATAGAAAATATAAGTTTTCTTTTCATAGATATGCCTAGT
83065 GGGAAAGTTG
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
46 45 1.00
ACGTcount: A:0.38, C:0.09, G:0.13, T:0.40
Consensus pattern (46 bp):
TTAAAAGATAGAAAATATAAGTTTTCTTTTCATAGATATGCCTAGT
Found at i:83289 original size:20 final size:20
Alignment explanation
Indices: 83257--83307 Score: 59
Period size: 20 Copynumber: 2.5 Consensus size: 20
83247 TTAATTTTTC
*
83257 AAAA-AAATTTTATGATATAT
1 AAAATAAATTATAT-ATATAT
*
83277 AAAAATAAATTATATTTATAT
1 -AAAATAAATTATATATATAT
83298 AAAATAAATT
1 AAAATAAATT
83308 TCGTATGTAT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
20 10 0.37
21 9 0.33
22 8 0.30
ACGTcount: A:0.59, C:0.00, G:0.02, T:0.39
Consensus pattern (20 bp):
AAAATAAATTATATATATAT
Found at i:83966 original size:15 final size:15
Alignment explanation
Indices: 83946--83975 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
83936 TAAGTCTCAA
83946 AATTCAAAATGAAAG
1 AATTCAAAATGAAAG
*
83961 AATTCAAATTGAAAG
1 AATTCAAAATGAAAG
83976 GTAACTAATC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.57, C:0.07, G:0.13, T:0.23
Consensus pattern (15 bp):
AATTCAAAATGAAAG
Found at i:96933 original size:15 final size:15
Alignment explanation
Indices: 96913--96948 Score: 72
Period size: 15 Copynumber: 2.4 Consensus size: 15
96903 CATAAATTAT
96913 ATTATTTTCATGTTA
1 ATTATTTTCATGTTA
96928 ATTATTTTCATGTTA
1 ATTATTTTCATGTTA
96943 ATTATT
1 ATTATT
96949 ATTATGCAGT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.28, C:0.06, G:0.06, T:0.61
Consensus pattern (15 bp):
ATTATTTTCATGTTA
Found at i:101130 original size:13 final size:13
Alignment explanation
Indices: 101114--101148 Score: 52
Period size: 13 Copynumber: 2.7 Consensus size: 13
101104 GTTTCCATGT
* *
101114 TATGTTTTTAAGC
1 TATGTTTTAAAGA
101127 TATGTTTTAAAGA
1 TATGTTTTAAAGA
101140 TATGTTTTA
1 TATGTTTTA
101149 TGCGTGCTCC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.29, C:0.03, G:0.14, T:0.54
Consensus pattern (13 bp):
TATGTTTTAAAGA
Found at i:111559 original size:19 final size:19
Alignment explanation
Indices: 111537--111574 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
111527 TCAATCATCC
111537 CTCATCCCATCA-TCTCTCA
1 CTCAT-CCATCATTCTCTCA
*
111556 CTCATTCATCATTCTCTCA
1 CTCATCCATCATTCTCTCA
111575 ACTCTTTTAG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 5 0.29
19 12 0.71
ACGTcount: A:0.21, C:0.42, G:0.00, T:0.37
Consensus pattern (19 bp):
CTCATCCATCATTCTCTCA
Found at i:114234 original size:27 final size:27
Alignment explanation
Indices: 114165--114218 Score: 108
Period size: 27 Copynumber: 2.0 Consensus size: 27
114155 TCCAGACATT
114165 GATATTTAATAAAAATCTCGTAAAAAC
1 GATATTTAATAAAAATCTCGTAAAAAC
114192 GATATTTAATAAAAATCTCGTAAAAAC
1 GATATTTAATAAAAATCTCGTAAAAAC
114219 AGAGTATTAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.52, C:0.11, G:0.07, T:0.30
Consensus pattern (27 bp):
GATATTTAATAAAAATCTCGTAAAAAC
Found at i:125708 original size:28 final size:28
Alignment explanation
Indices: 125676--125729 Score: 81
Period size: 28 Copynumber: 1.9 Consensus size: 28
125666 AAAATTTTAG
*
125676 GTGTTATTTGATAAACTGAGAAATTAAA
1 GTGTTATTTGATAAACTGAAAAATTAAA
* *
125704 GTGTTGTTTGATCAACTGAAAAATTA
1 GTGTTATTTGATAAACTGAAAAATTA
125730 CATGCTAAAT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 23 1.00
ACGTcount: A:0.39, C:0.06, G:0.19, T:0.37
Consensus pattern (28 bp):
GTGTTATTTGATAAACTGAAAAATTAAA
Found at i:126175 original size:134 final size:135
Alignment explanation
Indices: 126014--126288 Score: 534
Period size: 134 Copynumber: 2.0 Consensus size: 135
126004 ATGATAAATA
126014 ATTCATATCGGCCTATCATATTCTACACTTTATTATAGAAAAATTTTATCGGATTATTTTCAGTT
1 ATTCATATCGGCCTATCATATTCTACACTTTATTATAGAAAAATTTTATCGGATTATTTTCAGTT
126079 TCGATTATTAAACATGTGTAAAAAAATAATGACTTAAATGAAAATTTTACCTCTAAATTATAGGA
66 TCGATTATTAAACATGTGTAAAAAAATAATGACTTAAATGAAAATTTTACCTCTAAATTATAGGA
126144 TTTTT
131 TTTTT
126149 ATTCATATC-GCCTATCATATTCTACACTTTATTATAGAAAAATTTTATCGGATTATTTTCAGTT
1 ATTCATATCGGCCTATCATATTCTACACTTTATTATAGAAAAATTTTATCGGATTATTTTCAGTT
126213 TCGATTATTAAACATGTGTAAAAAAATAATGACTTAAATGAAAATTTTACCTCTAAATTATAGGA
66 TCGATTATTAAACATGTGTAAAAAAATAATGACTTAAATGAAAATTTTACCTCTAAATTATAGGA
126278 TTTTT
131 TTTTT
*
126283 TTTCAT
1 ATTCAT
126289 TTAGGTTCCT
Statistics
Matches: 139, Mismatches: 1, Indels: 1
0.99 0.01 0.01
Matches are distributed among these distances:
134 130 0.94
135 9 0.06
ACGTcount: A:0.37, C:0.12, G:0.09, T:0.42
Consensus pattern (135 bp):
ATTCATATCGGCCTATCATATTCTACACTTTATTATAGAAAAATTTTATCGGATTATTTTCAGTT
TCGATTATTAAACATGTGTAAAAAAATAATGACTTAAATGAAAATTTTACCTCTAAATTATAGGA
TTTTT
Found at i:129185 original size:12 final size:13
Alignment explanation
Indices: 129162--129186 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
129152 GGCCAGCACC
129162 TAAAATTTTTTTT
1 TAAAATTTTTTTT
129175 TAAAATTTTTTT
1 TAAAATTTTTTT
129187 GTATACTGAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (13 bp):
TAAAATTTTTTTT
Found at i:129256 original size:83 final size:86
Alignment explanation
Indices: 129168--129332 Score: 273
Period size: 83 Copynumber: 2.0 Consensus size: 86
129158 CACCTAAAAT
* * * *
129168 TTTTTTTTAAAATTTTTTTGTATACTGATATCTGATTCTGACACG-AAAATAAGAATTTTTTTTA
1 TTTTTTTTAAAAATTTTTCGTATACTGATATCTAATTCTGACACGAAAAAAAAGAATTTTTTTTA
129232 AA-T-TGTACTGGGTGCTGCA
66 AACTGTGTACTGGGTGCTGCA
129251 TTTTTTTTAAAAATTTTTCGTATACTGATATCTAATTCTGACACGAAAAAAAAGAATTTTTTTTA
1 TTTTTTTTAAAAATTTTTCGTATACTGATATCTAATTCTGACACGAAAAAAAAGAATTTTTTTTA
129316 AACTGTGTACTGGGTGC
66 AACTGTGTACTGGGTGC
129333 AGGCCATTGA
Statistics
Matches: 75, Mismatches: 4, Indels: 3
0.91 0.05 0.04
Matches are distributed among these distances:
83 42 0.56
84 20 0.27
85 1 0.01
86 12 0.16
ACGTcount: A:0.31, C:0.10, G:0.14, T:0.45
Consensus pattern (86 bp):
TTTTTTTTAAAAATTTTTCGTATACTGATATCTAATTCTGACACGAAAAAAAAGAATTTTTTTTA
AACTGTGTACTGGGTGCTGCA
Found at i:129542 original size:108 final size:107
Alignment explanation
Indices: 129264--129702 Score: 539
Period size: 112 Copynumber: 4.1 Consensus size: 107
129254 TTTTTAAAAA
** * * ***
129264 TTTTTCGTATACTGATATCTAATTCTGACACGAAAAAAAAG--AATTTTTTTTAAACTGTGT-AC
1 TTTTTCGTATTTTTATATCTGATTCTGACACGAAAAAAAAGAAAAAAATTTTT--ACTGT-TCAC
* *
129326 TGGGTGCAGGCCATTGACAGGCCAGCACCCAAATTTTTTTTA-TT
63 TGGGTGCCGGCCATTGACAGGCCAGCACCCAAAATTTTTTTATTT
* ***
129370 TTTTTCGTATTTTTATATCTGATTCTGATACGAAAAAAAAAGAAAATTTTTTTTACTGTTCACTG
1 TTTTTCGTATTTTTATATCTGATTCTGACACG-AAAAAAAAGAAAAAAATTTTTACTGTTCACTG
129435 GGTGCCGGCCATTGACAGGCCAGCACCCCAAAATTTTTTTATTT
65 GGTGCCGGCCATTGACAGGCCAGCA-CCCAAAATTTTTTTATTT
*
129479 TTTTTCGTATTTTTATATCTGATTCTGACACGAAAAAAAAGAAAAAAATTTTTATTGTTCACTGG
1 TTTTTCGTATTTTTATATCTGATTCTGACACGAAAAAAAAGAAAAAAATTTTTACTGTTCACTGG
*
129544 GTGCCGGCCATTGACAGGCCAGCACCCAAAAAAATTTTTTTTAAATT
66 GTGCCGGCCATTGACAGGCCAGCACCC---AAAA-TTTTTTT-ATTT
* * ** * *
129591 TTTTTCGTATTTTTATATCTGACTCAGACACGAAAAAAAAGAAAAAAAAATTTACTATTTACTGG
1 TTTTTCGTATTTTTATATCTGATTCTGACACGAAAAAAAAGAAAAAAATTTTTACTGTTCACTGG
*
129656 GTGCCGACCATTGACAGGCCAGCACCC-AAATTTTTTT-TTT
66 GTGCCGGCCATTGACAGGCCAGCACCCAAAATTTTTTTATTT
129696 CTTTTTC
1 -TTTTTC
129703 ATATATCAGT
Statistics
Matches: 299, Mismatches: 22, Indels: 24
0.87 0.06 0.07
Matches are distributed among these distances:
105 2 0.01
106 34 0.11
107 52 0.17
108 70 0.23
109 43 0.14
110 4 0.01
111 7 0.02
112 87 0.29
ACGTcount: A:0.31, C:0.17, G:0.14, T:0.37
Consensus pattern (107 bp):
TTTTTCGTATTTTTATATCTGATTCTGACACGAAAAAAAAGAAAAAAATTTTTACTGTTCACTGG
GTGCCGGCCATTGACAGGCCAGCACCCAAAATTTTTTTATTT
Found at i:130384 original size:2 final size:2
Alignment explanation
Indices: 130377--130404 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
130367 GATACGTAAG
130377 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
130405 TCAATTATTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:131367 original size:20 final size:20
Alignment explanation
Indices: 131314--131368 Score: 56
Period size: 20 Copynumber: 2.8 Consensus size: 20
131304 TAATAGAGTA
* * *
131314 GAGCAGAGCAGAGCATAACT
1 GAGCAGAGCAGAACAAAACG
* * *
131334 GAACTGAACAGAACAAAACG
1 GAGCAGAGCAGAACAAAACG
131354 GAGCAGAGCAGAACA
1 GAGCAGAGCAGAACA
131369 GAACATGTAT
Statistics
Matches: 26, Mismatches: 9, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.47, C:0.20, G:0.27, T:0.05
Consensus pattern (20 bp):
GAGCAGAGCAGAACAAAACG
Found at i:132431 original size:725 final size:716
Alignment explanation
Indices: 130814--132716 Score: 2537
Period size: 725 Copynumber: 2.6 Consensus size: 716
130804 GGATGCTTTG
* * * ** *
130814 TGTAACGCCCCAAACCCGACCTGGAAGTTTAAGCAGAAACTTAAACGAGTTACACCAA-GACAAT
1 TGTAACACCCCAAACCCGACCTGAAAGTTTAAGC-CAAACTTGGACGAGTTACA-CAATG-CATT
* * * ***
130878 AAAAATTGATTT-TTTTTGGGATTTTAATTTTGAAAAATAGAAATTTGGTTTTTTCGATTTAGGT
63 AAAAACTAATTTCTTTTTGGGATTTTAATTTTGAAACA-AGAAATTCATTTTTTTCGATTTAGGT
* * * *
130942 GA-TTCGTAGTTTCATGTTAGAAATTGACTGATACGAACGAGATTACCAAAAGGAAAGCAAGGCA
127 GATTTTGTAGTTTCGTGTTAGAAATTGATTGATACGGACGAGATTACCAAAA-GAAAGCAAGGCA
* *
131006 AATCCAAGACAATTTACAAACCCAAAAGATCAATTTGCAGTTATTTCAGGGTAAAACAATCCGAG
191 AATCCAAGACAATTTACAAACCCAAAAGATCAATTCGCAGTTATTTCAGTGTAAAACAATCCGAG
* * *
131071 CTCTCGTACGCTGTCCGATCCTAAATCAGATGTTTTCCTCAACAGATGAAGGTAAGAAAAAGGGT
256 CTCTCGTACGCTATCCGATCCTAAATCAGATGTTTTCCTGAACAGATGAAGGTAAGAAAAA-GTT
* *
131136 GAGTTACAAAGCACCGCGTATAACAAGGCTCAAATACAAATAAGTAGAGCATACTATATAACTCG
320 GAGTTACCAAGCACCGCGTATAACAAGGCTCAAATACAAATAAGAAGAGCATACTATATAACTCG
* * * *
131201 TAGTAACGCAAATAAATTATGAGCAATTGTATAACTAGTACGGAAAACTCTAGAGTATCATAGAG
385 TAGTAACACAAATAACTTATGAGCAGTTGTATAACTAGTACGGAAAACTCTAGAGTATCACAGAG
* * * * * *
131266 ATTTAATCAAATGTAGTACAACAGAACAAAGAAAAACATAATAGAGTAGAGCAGAGCAGAGCATA
450 ATTTAATCAAAGGTAGTACAACAGAACAAAGAAAAACATAATAGAGCAGAACAAAACAAAGCATA
* * * * * * *
131331 ACTGAACTGAACAGAACAAAACGGAGCAGAGCAGAACAGAACATGTATGTTTATGTAGATGTAGT
515 ACAGAACAGAACAGAACAAAACAGAACAAAGCAGAACAGAACATGTATATTTATGCAGATGTAGT
* * * *
131396 ATTTTTCAAACAGATCAGAATGTAGATTTATCAGAAACAGTCTTCTCAGACTCCGTTACACACAA
580 ATTTTTCAAACAGAACAAAATGAAGATTTATCAGAAACAGCCTTCTCAGACTCCGTTACACACAA
* * * *
131461 AAATAGAGTTTTTCCCCGAACTAATCCATCCAAAACTCACCAAGAAAGTCATCTCGAGTTGATAC
645 AAATAGAGTTCTCCCCCGAACTAATCCATCCAAAACACACCAAGAAAGTCATCCCGAGTTGATAC
131526 CACTAAA
710 CACTAAA
*** *
131533 TGTAACACCCCAAATTTGACCTGAAAGTTTAAGCCAAACTTGGACGAGATACACTAATGCATTAA
1 TGTAACACCCCAAACCCGACCTGAAAGTTTAAGCCAAACTTGGACGAGTTACAC-AATGCATTAA
* * *
131598 AAACTTATTTCTTTTCGGGATTTTAATTTTGAAAACCAGAAATTCATTTTTGTT-GATTTAGGTG
65 AAACTAATTTCTTTTTGGGATTTTAATTTTG-AAACAAGAAATTCATTTTT-TTCGATTTAGGTG
* *
131662 ATTTTGTAATTTCGTGTTAGAAATTGATTGATACGGACGAGATTATCAAAAGAAAAGCAAGGCAA
128 ATTTTGTAGTTTCGTGTTAGAAATTGATTGATACGGACGAGATTACCAAAAG-AAAGCAAGGCAA
* * * *
131727 ATACAAGACAATTTACAAACCCAAAAGATCAACTCGTAGTTATTAT-AGTGTAAAACAATCCAAG
192 ATCCAAGACAATTTACAAACCCAAAAGATCAATTCGCAGTTATT-TCAGTGTAAAACAATCCGAG
* * *
131791 CTCCCGTACGAC-ATCTGATCCTAAATCAGATGTTTTCCTGAACAGATAAAGGTAAGACAAAAGT
256 CTCTCGTACG-CTATCCGATCCTAAATCAGATGTTTTCCTGAACAGATGAAGGTAAGA-AAAAGT
* * *
131855 TGAGTTACCAAGCACCGTGTATGACCAGGCTCAAATACAAATAAGAAGAGCATACTATATAACTC
319 TGAGTTACCAAGCACCGCGTATAACAAGGCTCAAATACAAATAAGAAGAGCATACTATATAACTC
* *
131920 GAAGTAACACAAATAACTTATGAGCAGTTGTATAACTAGTACGGAAAACTCTAAAGTATCACAGA
384 GTAGTAACACAAATAACTTATGAGCAGTTGTATAACTAGTACGGAAAACTCTAGAGTATCACAGA
* *
131985 GATTTAATCAAAGGTAGTACAATAGAACAAAGCAAAACATAATAGAGCAGAACAAAACTAAATGG
449 GATTTAATCAAAGGTAGTACAACAGAACAAAGAAAAACATAATAGAGCAGAACAAAAC-AAA--G
* * * *
132050 TATAGAGCAGAGCAGAACAGAACAAAACAGAACAAAGCAGAGCAGAACATGTATATTTCTGCAGA
511 CATA-A-CAGAACAGAACAGAACAAAACAGAACAAAGCAGAACAGAACATGTATATTTATGCAGA
* * *
132115 TGTAGTTTTTTTCAAACAGAACAAAATGAAGATTTATTAGAAGCAGCCCTT-TCA-AGCTCCGTT
574 TGTAGTATTTTTCAAACAGAACAAAATGAAGATTTATCAGAAACAG-CCTTCTCAGA-CTCCGTT
* *
132178 ACGCACAAAAATAGAGTTCTCCCCCGAACTCATCCATCCAAAACACACCAAGAAAGTCATCCC-A
637 ACACACAAAAATAGAGTTCTCCCCCGAACTAATCCATCCAAAACACACCAAGAAAGTCATCCCGA
132242 GGTTGATACCACTAAA
702 -GTTGATACCACTAAA
* *
132258 TGTAACACCCTAAACCCGACCTGAAAGTTTAAGCCAAACTTGGACGAGTTACATCAATGCATTGA
1 TGTAACACCCCAAACCCGACCTGAAAGTTTAAGCCAAACTTGGACGAGTTACA-CAATGCATTAA
132323 AAACTAATTTCTTTTTGGGATTTTAATTTTGAAAGCAAGAAATTCATTTTTTTCGATTTAGGTGA
65 AAACTAATTTCTTTTTGGGATTTTAATTTTGAAA-CAAGAAATTCATTTTTTTCGATTTAGGTGA
* * *
132388 TTTTTTAGTTTTGTGTTAGAAATTGATTGATACGGATGAGATTACCAAAACGAAAGCAAGGCAAA
129 TTTTGTAGTTTCGTGTTAGAAATTGATTGATACGGACGAGATTACCAAAA-GAAAGCAAGGCAAA
* * * *
132453 TCCAAGACAATGTAAAAACCCAAAAGATCAATTCGCAGTTATTTCAGTGTAAAACAATCTGAGGT
193 TCCAAGACAATTTACAAACCCAAAAGATCAATTCGCAGTTATTTCAGTGTAAAACAATCCGAGCT
* * * * *
132518 CTCGTACGCTATCCGATTCTGAGTCAAATATTTTCCTGAACAGATGAAGGTAAGAAAAAAGTGTG
258 CTCGTACGCTATCCGATCCTAAATCAGATGTTTTCCTGAACAGATGAAGGTAAG-AAAAAGT-TG
* * * * * * **
132583 AGTTACCAAGCACCACGTATAACTAGGCTTAAATAGAAATATGCAGATTATACTATATAACTCGT
321 AGTTACCAAGCACCGCGTATAACAAGGCTCAAATACAAATAAGAAGAGCATACTATATAACTCGT
* * * * * *
132648 AGTAACACAAATAACTTAAGAGCAGTTGTATAACCAGTACAGACAACTCTAGAGCATCACAGATA
386 AGTAACACAAATAACTTATGAGCAGTTGTATAACTAGTACGGAAAACTCTAGAGTATCACAGAGA
132713 TTTA
451 TTTA
132717 GGACTAGTTT
Statistics
Matches: 1031, Mismatches: 127, Indels: 45
0.86 0.11 0.04
Matches are distributed among these distances:
717 1 0.00
718 30 0.03
719 72 0.07
720 337 0.33
721 8 0.01
723 4 0.00
724 10 0.01
725 445 0.43
726 124 0.12
ACGTcount: A:0.40, C:0.17, G:0.17, T:0.26
Consensus pattern (716 bp):
TGTAACACCCCAAACCCGACCTGAAAGTTTAAGCCAAACTTGGACGAGTTACACAATGCATTAAA
AACTAATTTCTTTTTGGGATTTTAATTTTGAAACAAGAAATTCATTTTTTTCGATTTAGGTGATT
TTGTAGTTTCGTGTTAGAAATTGATTGATACGGACGAGATTACCAAAAGAAAGCAAGGCAAATCC
AAGACAATTTACAAACCCAAAAGATCAATTCGCAGTTATTTCAGTGTAAAACAATCCGAGCTCTC
GTACGCTATCCGATCCTAAATCAGATGTTTTCCTGAACAGATGAAGGTAAGAAAAAGTTGAGTTA
CCAAGCACCGCGTATAACAAGGCTCAAATACAAATAAGAAGAGCATACTATATAACTCGTAGTAA
CACAAATAACTTATGAGCAGTTGTATAACTAGTACGGAAAACTCTAGAGTATCACAGAGATTTAA
TCAAAGGTAGTACAACAGAACAAAGAAAAACATAATAGAGCAGAACAAAACAAAGCATAACAGAA
CAGAACAGAACAAAACAGAACAAAGCAGAACAGAACATGTATATTTATGCAGATGTAGTATTTTT
CAAACAGAACAAAATGAAGATTTATCAGAAACAGCCTTCTCAGACTCCGTTACACACAAAAATAG
AGTTCTCCCCCGAACTAATCCATCCAAAACACACCAAGAAAGTCATCCCGAGTTGATACCACTAA
A
Found at i:132750 original size:13 final size:13
Alignment explanation
Indices: 132732--132797 Score: 96
Period size: 13 Copynumber: 5.1 Consensus size: 13
132722 AGTTTGGCAA
132732 TGCTTTTGAAAAG
1 TGCTTTTGAAAAG
132745 TGCTTTTGAAAAG
1 TGCTTTTGAAAAG
* *
132758 TGCTGTGGAAAAG
1 TGCTTTTGAAAAG
*
132771 TGCTTTTGAGAAG
1 TGCTTTTGAAAAG
*
132784 TGCTTTTAAAAAG
1 TGCTTTTGAAAAG
132797 T
1 T
132798 TTGGTTTAAA
Statistics
Matches: 46, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
13 46 1.00
ACGTcount: A:0.30, C:0.08, G:0.26, T:0.36
Consensus pattern (13 bp):
TGCTTTTGAAAAG
Found at i:133501 original size:20 final size:20
Alignment explanation
Indices: 133446--133501 Score: 58
Period size: 20 Copynumber: 2.8 Consensus size: 20
133436 ACCGAATGGT
*
133446 ACAGAGCAGAGCAGAACTAA
1 ACAGAGCAGAGCAGAACAAA
* * **
133466 ACATAACAGAATAGAACAAA
1 ACAGAGCAGAGCAGAACAAA
*
133486 ACGGAGCAGAGCAGAA
1 ACAGAGCAGAGCAGAA
133502 TAGAACATGT
Statistics
Matches: 26, Mismatches: 10, Indels: 0
0.72 0.28 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.54, C:0.18, G:0.23, T:0.05
Consensus pattern (20 bp):
ACAGAGCAGAGCAGAACAAA
Found at i:134682 original size:612 final size:615
Alignment explanation
Indices: 133465--134684 Score: 1728
Period size: 615 Copynumber: 2.0 Consensus size: 615
133455 AGCAGAACTA
* * * *
133465 AACATAACAGAATAGAACAAAACGGAGCAGAGCAGAATAGAACATGTATGTTTATGCAGATGCAA
1 AACAGAACAGAACAGAACAAAACGGAGCAGAGCAGAACAAAACATGTATGTTTATGCAGATGCAA
* * * * * *
133530 CATTTTTCAAACAGATTAGAATGTAGATTTATCAGAAACAGTCTTCCCGAACTTAGTTCCACACA
66 CATTTTTCAAACAGATCAGAACGTAGATTTATCAAAAACAGTCTTCCAGAACTCAGTTACACACA
* * * **
133595 AAAATAGAGTTCTCCCTCGAACTCATCCATCCGAAACACACCAAGAAAGTCATTCCGGGTTGATA
131 AAAATAGAGTTCTCCCTCGAACTCATCCATCCAAAACACACCAAGAAAGGCATCCCAAGTTGATA
*
133660 CCACTACATGTAACACCCCAAACACAACCTGAAAGTTTAACCCGAACTTGGACGAGTTACACAAA
196 CCACTACATGTAACACCCCAAACACAACCTGAAAGTTTAACACGAACTTGGACGAGTTACACAAA
* * * *
133725 TGCATTGAAAATTGATTTCTTTTTGGGATTTTAAATTTGTGAACCAGAAATTCTTTTTTGTCTAT
261 TGCAATGAAAACTGATTTCTTTTCGGGATTTTAAATTTGTGAACCAGAAATTCTTTTTTGTCGAT
* * *
133790 TTAGGTGATTTTCTAGTTTCATGTGAAAAATTGATCGATACGGACGAGATTATCAAATGGAAAGC
326 TTAGGTGATTTTCTAGTTTCATGTGAAAAATTGATCGATACGAACGAGATTACCAAAAGGAAAGC
* * *
133855 AAGGCAAATCCAAGACAATTTAACAACCCAAAATATCAATTTGCAGTTATTACAATGTAAAAGAA
391 AAGGCAAATCCAAGACAATTTAACAACCCAAAAGATCAATTCGCAGTTATTACAATGTAAAACAA
* * * *
133920 TCCGAGCTCTCGTACGCCGTCTGATCTTAAATCAGATGTTTTCCTGAACAGATGAAGGTAAGACA
456 TCCGAGCACTCGTACGCCGTCTGATCTTAAATCAGATATTTTCCTAAACAGATGAAGGTAAGAAA
* * *
133985 AAGGGTGAGTTATCAAGCATTGCGTATAACCAGGCTCAAATACAAATAAGTAGAGCATACTATAT
521 AAGGGTGAGTTATCAAGCACTGCGTATAACCAGACTCAAATAAAAATAAGTAGAGCATACTATAT
134050 AACTCGTAGTAACGAAGATAAGTAGAACAG
586 AACTCGTAGTAACGAAGATAAGTAGAACAG
* * *
134080 AACAGAACAGAACAGAATAAAACGGTGCAGAGCAGAACAAAACATGTATGTTTATGCAGATGCAG
1 AACAGAACAGAACAGAACAAAACGGAGCAGAGCAGAACAAAACATGTATGTTTATGCAGATGCAA
* * * * *
134145 TATTTTTCAAACAGATCGGAACGTATATTTATCAAAAATAGTCTTCCAGAACTCCGTTACACACA
66 CATTTTTCAAACAGATCAGAACGTAGATTTATCAAAAACAGTCTTCCAGAACTCAGTTACACACA
* *
134210 AAAATAGAGTTCTCTCTCGAACTCATCCATCCAAAACACATCAAGAAAGGCATCCCAAGTTGATA
131 AAAATAGAGTTCTCCCTCGAACTCATCCATCCAAAACACACCAAGAAAGGCATCCCAAGTTGATA
* * * * *
134275 CCACTGA-ATGTAACACCCCAAACCCAACCTGGAAGTTTAAGACGAGCTTGGACGAGTTACACCA
196 CCACT-ACATGTAACACCCCAAACACAACCTGAAAGTTTAACACGAACTTGGACGAGTTACACAA
*
134339 A-GACAATGAAAACTGATTTCTTTTCGGGA-TTT-AATTT-TGAAATCTAGAAATT-TTTTTT-T
260 ATG-CAATGAAAACTGATTTCTTTTCGGGATTTTAAATTTGTG-AA-CCAGAAATTCTTTTTTGT
* * *
134398 CGATTTAGGTGA-TTTCGTAGTTTCGTGTTAGAAATTGA-CTGATACGAACGAGATTACCAAAAG
322 CGATTTAGGTGATTTTC-TAGTTTCATGTGAAAAATTGATC-GATACGAACGAGATTACCAAAAG
* * *
134461 GAAAGCAAGGCAAATCCAAGACAATTT-ACAAACCCAAAAGATCAATTCGTAGTTATTTCAGTGT
385 GAAAGCAAGGCAAATCCAAGACAATTTAAC-AACCCAAAAGATCAATTCGCAGTTATTACAATGT
* * * *
134525 AAAACAATCTGATCACTCGTACGCTGTCTGAT-TCTAAATTAGATATTTTCCTAAACAGATGAAG
449 AAAACAATCCGAGCACTCGTACGCCGTCTGATCT-TAAATCAGATATTTTCCTAAACAGATGAAG
134589 GTAAGAAAAAGGGTGAGTTA-CACAGCACTGCGTATAA-CACGACTCAAATAAAAATAAGTAGAG
513 GTAAGAAAAAGGGTGAGTTATCA-AGCACTGCGTATAACCA-GACTCAAATAAAAATAAGTAGAG
134652 CATACTATATAACTCGTAGTAACGAAGATAAGT
576 CATACTATATAACTCGTAGTAACGAAGATAAGT
134685 TAAGAGCAGT
Statistics
Matches: 536, Mismatches: 59, Indels: 23
0.87 0.10 0.04
Matches are distributed among these distances:
611 12 0.02
612 248 0.46
613 13 0.02
614 12 0.02
615 250 0.47
616 1 0.00
ACGTcount: A:0.38, C:0.18, G:0.17, T:0.26
Consensus pattern (615 bp):
AACAGAACAGAACAGAACAAAACGGAGCAGAGCAGAACAAAACATGTATGTTTATGCAGATGCAA
CATTTTTCAAACAGATCAGAACGTAGATTTATCAAAAACAGTCTTCCAGAACTCAGTTACACACA
AAAATAGAGTTCTCCCTCGAACTCATCCATCCAAAACACACCAAGAAAGGCATCCCAAGTTGATA
CCACTACATGTAACACCCCAAACACAACCTGAAAGTTTAACACGAACTTGGACGAGTTACACAAA
TGCAATGAAAACTGATTTCTTTTCGGGATTTTAAATTTGTGAACCAGAAATTCTTTTTTGTCGAT
TTAGGTGATTTTCTAGTTTCATGTGAAAAATTGATCGATACGAACGAGATTACCAAAAGGAAAGC
AAGGCAAATCCAAGACAATTTAACAACCCAAAAGATCAATTCGCAGTTATTACAATGTAAAACAA
TCCGAGCACTCGTACGCCGTCTGATCTTAAATCAGATATTTTCCTAAACAGATGAAGGTAAGAAA
AAGGGTGAGTTATCAAGCACTGCGTATAACCAGACTCAAATAAAAATAAGTAGAGCATACTATAT
AACTCGTAGTAACGAAGATAAGTAGAACAG
Found at i:135940 original size:735 final size:733
Alignment explanation
Indices: 134084--142356 Score: 6760
Period size: 735 Copynumber: 11.2 Consensus size: 733
134074 GAACAGAACA
* * *
134084 GAACAGAACAGAATAAAACGGTGCAGAGCAGAACAA-AACATGTATGTTTATGCAGATGCAGTAT
1 GAACAGAACAAAACAAAACGGAGCAGAGCAGAA-AATAACATGTATGTTTATGCAGATGCAGTAT
* * * * *
134148 TTTTCAAACAGATCGGAACGTATATTTATCAAAAATAGTCTT-CCAGAACTCCGTTACACACAAA
65 TTTTCAAACAGATCAGAACGCAGATTTATCAGAAACAGTCTTCCCA-AACTCCGTTACACACAAA
* * **
134212 AATAGAGTTCTCTCTCGAACTCATCCATCCAAAACACATC-AAGAAAGGCATCCCAAGTTGATAC
129 AATAGAGTTCTC-CCCGAACTCATCCATCCAAAACACA-CAAAGAAAGTCATCCCGGGTTGATAC
* * * * *
134276 CACTGAATGTAACACCCCAAACCCAACCTGGAAGTTTAAGACGAGCTTGGACGAGTTACACCAA-
192 CACTAAATGTAACACCCCAAACCCGACCTAGAAGTTTAAGCCGAACTTGGACGAGTTACACCAAT
* * *
134340 GACAATGAAAACTGATTTCTTTTCGGGA-TTTAATTTTGAAATCTAGAAATTT-TTTTTTCGATT
257 G-CATTGAAAACTGATTTCTTTTCGGGATTTTAATTTTGAAAACCAGAAATTTATTTTTTCGATT
* * * * * * *
134403 TAGGTGATTTCGTAGTTTCGTGTTAGAAATTGACTGATACGAACGAGATTACCAAAAGGAAAGCA
321 TAGATGATTTTGTAGTTTCGTGTTAGAAATTTATTTATACGGACGAGATTATCAAAAGGAAAGCA
*
134468 AGGCAAATCCAAGACAATTTACAAACCCAAAAGATCAATTCGTAGTTATTTCAGTGTAAAACAAT
386 AGGCAAATCCAAGACAATTTACAAACCCAAAAGATCAATTCGCAGTTATTTCAGTGTAAAACAAT
* * * * ** * * * * *
134533 CTGATCACTCGTACGCTGTCTGATTCTAAATTAGATATTTTCCTAAACAGATGAAGGTAAGAAAA
451 CCGAGCTCTCGTACACCATCCGATCCTAAATCAGATATTTTCCTGAACAGATGAAGGTAAGACAA
* * *
134598 AGGGTGAGTTA-CACAGCACTGCGTATAA-CACGACTCAAATAAAAATAAGTAGAGCATACTATA
516 AGGGTGAGTTACCA-AGCACCGCGTATAACCA-GACTCAAATACAAATAAGCAGAGCATACTATA
* * * * * * *
134661 TAACTCGTAGTAACGAAGATAAGTTAAGAGCAGTTGTATAACTACTACGGGCGACTCTAAAGTAT
579 TAACTCGTAGTAACGAAAATAACTTAAGAGCAGTTGTATAACCAGTACGGACAACTCTAGAGTAT
* *
134726 CACAGAGATTTAATCAAAGGTAGTACAATAAAACAAAG-AAAATCATAATAGAGCAGAACAAAAT
644 CACAGAGATTTAATCAAAGGTAGTACAATAGAACAAAGCAAAA-CATAATAGAGCAGAACAAAGT
* * * * * *
134790 CGAATCGTACAGAGTAGAGCAGAACT
708 TGAATGGTACATAGCAAAGCATAACT
* * * * * * *
134816 GAACAAAACAGAACAAAATGGAGCAGAGTAGCACATAACATGTATGTTTATACAGAT-CTAGTAT
1 GAACAGAACAAAACAAAACGGAGCAGAGCAGAAAATAACATGTATGTTTATGCAGATGC-AGTAT
* *** *
134880 TTTTTAAACAGATCAGAAAATAGTTTTATCAG-AA-A-------C--A-------A-ACACAAAA
65 TTTTCAAACAGATCAGAACGCAGATTTATCAGAAACAGTCTTCCCAAACTCCGTTACACACAAAA
*
134926 ATAGAGTTCTCCCCAGATCTCATCCATCCAAAACACACAAAGAAAGTCATCCCAGGG-TGATACC
130 ATAGAGTTCTCCCC-GAACTCATCCATCCAAAACACACAAAGAAAGTCATCCC-GGGTTGATACC
* *
134990 ACTAAATGTAACACCCCAAACTCGACCTAGAAGTTTAAGCCGAACTTGGATGAGTTACACCAATG
193 ACTAAATGTAACACCCCAAACCCGACCTAGAAGTTTAAGCCGAACTTGGACGAGTTACACCAATG
* ** *
135055 CATT-TAAACAAATTTCTTTTCGGGATTTTAATTTTGAAAACCAGAAATTCATTTTTGTCGATTT
258 CATTGAAAACTGATTTCTTTTCGGGATTTTAATTTTGAAAACCAGAAATTTATTTTT-TCGATTT
* ** *
135119 AGATGATTTTGTAGTTTCGTGTTATAAATTTATTTATATAGACGAGATTATGAAAAGGAAAGCAA
322 AGATGATTTTGTAGTTTCGTGTTAGAAATTTATTTATACGGACGAGATTATCAAAAGGAAAGCAA
* * * *
135184 GGAAAATCCAAGACAATTTACAAATCCAAAAGATTAATTCGCAGTTATTTCAGAGTAAAACAATC
387 GGCAAATCCAAGACAATTTACAAACCCAAAAGATCAATTCGCAGTTATTTCAGTGTAAAACAATC
* * * *
135249 CGAGCTGTCGTACACCATCTGATCCTAAATCAGATGTTTTCCTGAATAGATGAAGGTAAGACAAA
452 CGAGCTCTCGTACACCATCCGATCCTAAATCAGATATTTTCCTGAACAGATGAAGGTAAGACAAA
* * * *
135314 GGGTGAGTTACCAAGCACCGTGTATAACCATG-CTCAAATATAAATAAGCCGTGCATACTATATA
517 GGGTGAGTTACCAAGCACCGCGTATAACCA-GACTCAAATACAAATAAGCAGAGCATACTATATA
* * * * *
135378 ACTCGTAGTAAC-ACAAATAATTTCAGAGCAGTTGTATAACAAGTACGGACAACTGTAGAGTGTC
581 ACTCGTAGTAACGA-AAATAACTTAAGAGCAGTTGTATAACCAGTACGGACAACTCTAGAGTATC
* * *
135442 ATAGGGATTTAATCAAAGGTAGTACAATAGAAGAAAGCAAAACATAATAGAGCAGAACAAAGTTG
645 ACAGAGATTTAATCAAAGGTAGTACAATAGAACAAAGCAAAACATAATAGAGCAGAACAAAGTTG
135507 AATGGTACATAGCAAAGCATAACT
710 AATGGTACATAGCAAAGCATAACT
* * ** * * *
135531 GAACAGAACAAAAGAAAATGGAATAGAGCAGAAAATATCTTGTTTGTTTATGCAGATGCAGTATT
1 GAACAGAACAAAACAAAACGGAGCAGAGCAGAAAATAACATGTATGTTTATGCAGATGCAGTATT
* * * *
135596 TTTCAAACATATCAAAATGCAGATTTATCAGAAACAGT-TTACCCAAACTTCGTTACACACAAAA
66 TTTCAAACAGATCAGAACGCAGATTTATCAGAAACAGTCTT-CCCAAACTCCGTTACACACAAAA
* * * *
135660 AAAGAGTTCTCCCCTAAGCTCATCCATCCAAAATACACCAAGAAAGTCATCCCGGGTTGATACCA
130 ATAGAGTTCTCCCCGAA-CTCATCCATCCAAAACACACAAAGAAAGTCATCCCGGGTTGATACCA
* * *
135725 CTAAATGTAACACCCCAAACCCGATCTGGAAGTTTAAGCCGATCTTGGACGAGTTACACCAATGC
194 CTAAATGTAACACCCCAAACCCGACCTAGAAGTTTAAGCCGAACTTGGACGAGTTACACCAATGC
* *
135790 ATTGAAAACTGATTTCTTCTCGGGATTTTAATTTTGAAAACCAGAAATTTATTTTTGTTGATTTA
259 ATTGAAAACTGATTTCTTTTCGGGATTTTAATTTTGAAAACCAGAAATTTATTTTT-TCGATTTA
* *
135855 GGTGATTTTGTAGTTTCGTGTTAGAAATTTATTTATACGGATGAGATTATCAAAAGGAAAGCAAG
323 GATGATTTTGTAGTTTCGTGTTAGAAATTTATTTATACGGACGAGATTATCAAAAGGAAAGCAAG
* *
135920 GCAAATCCAGGACAATTTACAAAACCAAAAGATCAATTCGCAGTTATTTCAGTGTAAAACAATCC
388 GCAAATCCAAGACAATTTACAAACCCAAAAGATCAATTCGCAGTTATTTCAGTGTAAAACAATCC
* * * *
135985 AAGCTCTCGTACACCATCCAATCCTAAATAAGATGTTTTCCTGAACAGATGAAGGTAAGACAAAG
453 GAGCTCTCGTACACCATCCGATCCTAAATCAGATATTTTCCTGAACAGATGAAGGTAAGACAAAG
* ** ** * *
136050 GGTGAGTTACCAGGCACTACGTATAACCAGGGTAAAATACAAATAAGCAGAGCATACTATATAGC
518 GGTGAGTTACCAAGCACCGCGTATAACCAGACTCAAATACAAATAAGCAGAGCATACTATATAAC
* * * * *
136115 TCGTAGTAACGAAAATAACTTCAGACCGGTTGTATAACCATTACGGACAACTCTAGAGTACCACA
583 TCGTAGTAACGAAAATAACTTAAGAGCAGTTGTATAACCAGTACGGACAACTCTAGAGTATCACA
* * * * * * *
136180 AAGAGTTAATCAAAGGTAGTACAATAGAGCAAAGCAAAACATAACAGAGGAGACCAAAACTT-AA
648 GAGATTTAATCAAAGGTAGTACAATAGAACAAAGCAAAACATAATAGAGCAGAAC-AAAGTTGAA
* *
136244 TGGTACAGAGCAGAACTGAACAGAGCAGAACAGAATTGAACA
712 TGGT----A-C---A-T------AGC--AA-AGCA-T-AACT
* ** * * *
136286 GAACAGAACAAAACAAAACGGTGCAGAGCAGAGCATAACATGTACGTTTATGCAGATGCAATTTT
1 GAACAGAACAAAACAAAACGGAGCAGAGCAGAAAATAACATGTATGTTTATGCAGATGCAGTATT
* * *
136351 TTTCAAACAGATTAGAACGCAGATTTATTAGAAACAGTCTTCCTAAACTCCGTTACACACAAAAA
66 TTTCAAACAGATCAGAACGCAGATTTATCAGAAACAGTCTTCCCAAACTCCGTTACACACAAAAA
* * * *
136416 TAGAGTTCTCCCTCGAACTCATCCATCCAAAACATAAAAAGAAAGTCATCCTGGGTTGAGACCAC
131 TAGAGTTCTCCC-CGAACTCATCCATCCAAAACACACAAAGAAAGTCATCCCGGGTTGATACCAC
* * *
136481 TAAATGTAACACCCCAAACCCGACTTAGAAGTTTAAGCCAAACTTGGATG-GATTACACCAATGC
195 TAAATGTAACACCCCAAACCCGACCTAGAAGTTTAAGCCGAACTTGGACGAG-TTACACCAATGC
* * * ** * *
136545 ATTGAAAACTGATTTCATTTCGGGATTTTAAGTTTGAAAATTC-GAAGTACATATTTTTTTCAAA
259 ATTGAAAACTGATTTCTTTTCGGGATTTTAATTTTGAAAA-CCAGAA--ATTTA-TTTTTTCGAT
* * * * *
136609 TTAGATGATTTTTTAGTTTCATTTTAGAAATTTATTTATATGGACGAGATAATCAAAAGGAAAGC
320 TTAGATGATTTTGTAGTTTCGTGTTAGAAATTTATTTATACGGACGAGATTATCAAAAGGAAAGC
*
136674 AAGGCAAATCCAAGACAATTTACAAACCCAAAAGATCAATTCGTAGTTATTTCAGTGTAAAACAA
385 AAGGCAAATCCAAGACAATTTACAAACCCAAAAGATCAATTCGCAGTTATTTCAGTGTAAAACAA
* * *** * * *
136739 TTCTAGCTCTCGTATTTCGTCCGATCCTAAATCAGATATTTTTCTGAATAGATGAAGGTAAGACA
450 TCCGAGCTCTCGTACACCATCCGATCCTAAATCAGATATTTTCCTGAACAGATGAAGGTAAGACA
* * *
136804 AAGGGTGAGTTACCAAGCACCGCTTATAACCAGTCTCAAATACAAATAAGCAGAGCATATTATAT
515 AAGGGTGAGTTACCAAGCACCGCGTATAACCAGACTCAAATACAAATAAGCAGAGCATACTATAT
* * * *
136869 AACTC-TAGTAACGTAAATAACATAACA-CTAGTTGTATAACCAGTACGGACGACTCTAGAGTAT
580 AACTCGTAGTAACGAAAATAACTTAAGAGC-AGTTGTATAACCAGTACGGACAACTCTAGAGTAT
* * * * * *
136932 CACAGAGATTTAACCAAAGGTAGTACAACAGAACAAA-AAAAACATAATAGAGTAGAA-TAAGAC
644 CACAGAGATTTAATCAAAGGTAGTACAATAGAACAAAGCAAAACATAATAGAGCAGAACAAAG-T
* * *
136995 TGAATGGTACAAAGAAAAGCAAAACT
708 TGAATGGTACATAGCAAAGCATAACT
* * * * **
137021 GAATAGAACAGAACAAAACGGAGCGGAGCAGAACAA-AACATGTATGTATATTAAGATGCAGTAT
1 GAACAGAACAAAACAAAACGGAGCAGAGCAGAA-AATAACATGTATGTTTATGCAGATGCAGTAT
* * *
137085 ATTTT-AAACAGATCAGAACGTAGATTTATCAGAAACAGTCTTCCAAAACTCCGTTGCACA-AAA
65 -TTTTCAAACAGATCAGAACGCAGATTTATCAGAAACAGTCTTCCCAAACTCCGTTACACACAAA
** ** * * * ** *
137148 AGA-A-AG-TCATCCTAG-GTTGATACCA-CTAAATGTAACACCCCAAATTTTAAGTCA-CACTT
129 A-ATAGAGTTC-TCCCCGAACTCAT-CCATC-CAA---AACA-CACAAA--GAAAGTCATC-C-C
* * * * *** * **** * *
137207 GGACTAGTTA-CAC-CAATG---CATTGCAAA-CTGA--T-TTCTTTTCAG--GATCTT--A--A
182 GG-GTTGATACCACTAAATGTAACACCCCAAACCCGACCTAGAAGTTTAAGCCGAACTTGGACGA
* ** ** * * * * * ****
137257 TTTGGA--AAACCA---AAAATTCATTTTTCTCGATTTAGGTGATTTTGTAGTTTCG--TGTTAG
246 GTTACACCAATGCATTGAAAACTGA--TTTCT---TTTCGG-GA-TTT-TAATTTTGAAAACCAG
* * * * *** ** * *** * * *
137315 AAATTTATTTATACGGA---CGA-GATTATG-A--AAAG-GAAAGCAAGGCA--AATCCAAGAC-
303 AAATTTATTTTTTC-GATTTAGATGATTTTGTAGTTTCGTGTTAGAAATTTATTTATAC-GGACG
*** * * ** **** * *
137369 A-ATT-T-ACAAACCCAA--AAGATCAATTCGC-AG-TTATTT-C--AGTGTAAA-A-CAGTCCG
366 AGATTATCA-AAAGGAAAGCAAG-GCAAATC-CAAGACAATTTACAAACCCAAAAGATCAATTCG
* ** ** * *
137422 -AG-T-TCTC---GT-ATGCCGTCCGA--TC-C-TAAATCA---G-------AT--G---TTTTC
428 CAGTTATTTCAGTGTAAAACAATCCGAGCTCTCGTACACCATCCGATCCTAAATCAGATATTTTC
* * * * * *
137461 ATGAACAGATGAAGGTAAGACAAAGGGTGAGTAACCAAGCACCACTTATAACCGGGCTCAAATAC
493 CTGAACAGATGAAGGTAAGACAAAGGGTGAGTTACCAAGCACCGCGTATAACCAGACTCAAATAC
* * *
137526 AAATAAGGAGAGCATACTATATAACTCGTAGTAACGCAAATAACTTAAGAGTAGTTGTATAACCA
558 AAATAAGCAGAGCATACTATATAACTCGTAGTAACGAAAATAACTTAAGAGCAGTTGTATAACCA
* * * * ** *
137591 GTACGGTCAACTCTAGAGTATCACAGAGATTTAAGCAAATGTAGTACAACAGAATGAAGTAAAAC
623 GTACGGACAACTCTAGAGTATCACAGAGATTTAATCAAAGGTAGTACAATAGAACAAAGCAAAAC
* * ** * * * *
137656 AGAATAGAGCATAACAAAACTGAATGGTACAGAGCAGAGCAGAACA
688 ATAATAGAGCAGAACAAAGTTGAATGGTACATAGCAAAGCATAACT
* * * * * * ** * *
137702 GAACTGAACAGAACTAAACGGAGTAGAGAAGAACAGGACATGTATGTTTATGCAAATACAGTATT
1 GAACAGAACAAAACAAAACGGAGCAGAGCAGAAAATAACATGTATGTTTATGCAGATGCAGTATT
*
137767 TTTCAAACAGATCAGAACGCAGATTTATCAGAAACAATCTTCCCAAACTCCGTTACACACAAAAA
66 TTTCAAACAGATCAGAACGCAGATTTATCAGAAACAGTCTTCCCAAACTCCGTTACACACAAAAA
* * * * **
137832 TAGAGTTCTCCCCTAAACTCATCCAT-AAGAAACTCACCAAGAAAGTCATCCTAGGTTGATACCA
131 TAGAGTTCTCCCC-GAACTCATCCATCCA-AAACACACAAAGAAAGTCATCCCGGGTTGATACCA
* * * *
137896 CTAAATGTAACACCTCAAACTCGACCTGGAAGTTTAA-CCTGAACTTGGACGAGCTACACCAATG
194 CTAAATGTAACACCCCAAACCCGACCTAGAAGTTTAAGCC-GAACTTGGACGAGTTACACCAATG
* ** * * * *
137960 CATTGAAAACTAATTTCTTTTCCAGATTTTAAATTTGTAAACAAGAAATTCATTTTTTCTGATTT
258 CATTGAAAACTGATTTCTTTTCGGGATTTTAATTTTGAAAACCAGAAATTTATTTTTTC-GATTT
* * * *** ** * *
138025 AGGTGATTTTTTAGTTTCGTGTTCA-AAATTGACCGATTTGGACGGGATTATGAAAAGGAAAGCA
322 AGATGATTTTGTAGTTTCGTGTT-AGAAATTTATTTATACGGACGAGATTATCAAAAGGAAAGCA
* * * *
138089 AGG-AAAACCTAAGACAATTTA-AAACCCAAAAGATCAA-TCTGTAGTTATTTAAGTGTAAAATA
386 AGGCAAATCC-AAGACAATTTACAAACCCAAAAGATCAATTC-GCAGTTATTTCAGTGTAAAACA
* * **
138151 ATTCGAGCTCTCGTACACCGTTTGATCCTAAATC----A----CCTGAACAGATGAAGGTAAGAC
449 ATCCGAGCTCTCGTACACCATCCGATCCTAAATCAGATATTTTCCTGAACAGATGAAGGTAAGAC
* ** * * *
138208 AAAGCGTGAGTTACCAAGCACCGCGTATAATTAGGCTTAAATACAAATAAGTAGAGCATACTATA
514 AAAGGGTGAGTTACCAAGCACCGCGTATAACCAGACTCAAATACAAATAAGCAGAGCATACTATA
* * * **
138273 TAACTCGTAATAACGTAAATAACTTAAAAGCAGTTGCGTAACCAGTACGGACAACTCTAGAGTAT
579 TAACTCGTAGTAACGAAAATAACTTAAGAGCAGTTGTATAACCAGTACGGACAACTCTAGAGTAT
* * * * * * ***
138338 CACAGAAATTTAATCAAAGGTACTGCAACAGAACAAAGCAAAACATAATAGATCAGAATAAAACC
644 CACAGAGATTTAATCAAAGGTAGTACAATAGAACAAAGCAAAACATAATAGAGCAGAACAAAGTT
* * * * *
138403 GAATGGTACAGAGCAGAGTAGAATT
709 GAATGGTACATAGCAAAGCATAACT
* * * * *
138428 GAACAAAACAGAAGAAAACGGAGCAGAGAAGAACAA-AACATGTATGTTTATGCAGAGGCAGTAT
1 GAACAGAACAAAACAAAACGGAGCAGAGCAGAA-AATAACATGTATGTTTATGCAGATGCAGTAT
* ** * * * * * *
138492 TTGTCAAGTAGATCATAACGCAGATGTATTAGGAACAATCTTCCCAATCTCCGTTACACAC-AAA
65 TTTTCAAACAGATCAGAACGCAGATTTATCAGAAACAGTCTTCCCAAACTCCGTTACACACAAAA
*** * * * *
138556 ATTTTGCTCTCCCCCAAACTCATCCATCCAAAACACACCAAGAAAGTCATCCCAGGTTGATACCA
130 ATAGAGTTCT-CCCCGAACTCATCCATCCAAAACACACAAAGAAAGTCATCCCGGGTTGATACCA
** ** * * *
138621 CTAAATGTAACACCTAAAACTTGACCTGGAAGTTTAAGTCGAACTTGGACGAGTTTCACCAATGC
194 CTAAATGTAACACCCCAAACCCGACCTAGAAGTTTAAGCCGAACTTGGACGAGTTACACCAATGC
* * **
138686 ATTGAAAACTGATTTCTTTTCGGGATTTTAATTTTGAAAACAACAAATCCATTTTTTTCGATTTA
259 ATTGAAAACTGATTTCTTTTCGGGATTTTAATTTTGAAAACCAGAAATTTA-TTTTTTCGATTTA
* * * * * *
138751 GGTGATTTCGTAGTTTCGTGTTAGAAATTGACTGATACGGACGAGATTATGAAAAGGAAAGCAAG
323 GATGATTTTGTAGTTTCGTGTTAGAAATTTATTTATACGGACGAGATTATCAAAAGGAAAGCAAG
* * *
138816 GCAAATCCAAGACAATTTACAAACCCAAAAGATCAA-TCTGTAATTATTTCAGTGTAAAAAAATC
388 GCAAATCCAAGACAATTTACAAACCCAAAAGATCAATTC-GCAGTTATTTCAGTGTAAAACAATC
* ** * * * * * * * *
138880 TGAGCTCTCGTATGCCGTTCAATCCTAAATCAGTTGTTTTTCTGAACAGAT-AATGGGAGGACAA
452 CGAGCTCTCGTACACCATCCGATCCTAAATCAGATATTTTCCTGAACAGATGAA-GGTAAGACAA
* * * * *
138944 AAGGTGAGTTACCAGGCACCGCGTCT-A--AG-CTTAAATACAAGTAAGCAGAGCATACTATATA
516 AGGGTGAGTTACCAAGCACCGCGTATAACCAGACTCAAATACAAATAAGCAGAGCATACTATATA
* * * * *
139005 ACTCATAATAACGCAAATAACTTAAAAGCAGTTGTATAACCAGTACGGACAACTCTGGAGTAATC
581 ACTCGTAGTAACGAAAATAACTTAAGAGCAGTTGTATAACCAGTACGGACAACTCTAGAGT-ATC
* * * * ****
139070 ACAGAAATTTAATCAAAGGTAGTACAACAGAACAAAGGAAAACATAAGAGAGCAGAACAAAACCA
645 ACAGAGATTTAATCAAAGGTAGTACAATAGAACAAAGCAAAACATAATAGAGCAGAACAAAGTTG
* * * *
139135 AATGGTACAGAGCAAAGTAGAAGT
710 AATGGTACATAGCAAAGCATAACT
* * * * * *
139159 AAACAGAATAGAACAGAATGGTATAG-AGGAAAGCA-AAACAAAACATGTATGTTTATGCAGATG
1 GAACAGAACAAAACAAAACGG---AGCA-G--AGCAGAAA-ATAACATGTATGTTTATGCAGATG
* * * * * * *
139222 TAGTTTTTTTCAAACAGAACAGAATGCAGATTTATTAGAAGCAGTCCTT-CCAAACTCCGTTACG
59 CAGTATTTTTCAAACAGATCAGAACGCAGATTTATCAGAAACAGT-CTTCCCAAACTCCGTTACA
* * * * * * * **
139286 CATAAGAATAAAGTTCTGTCCCGAACTCATCTATTCAAAACACACCAAA-AATGTCATCCCAAGT
123 CACAAAAATAGAGTTCT-CCCCGAACTCATCCATCCAAAACACA-CAAAGAAAGTCATCCCGGGT
** * * * * *
139350 TGATACCACTAAATGTAACACTGCAAACTCAACCT-GTAAGTTTAAGCTGAACATGGATGAGTTA
186 TGATACCACTAAATGTAACACCCCAAACCCGACCTAG-AAGTTTAAGCCGAACTTGGACGAGTTA
* * * * * *
139414 CACAAATGCATTGAAAACTGATTTTTTTTCAGGATTTTAAATTTGAAATCCAAAAATTCT-TTTT
250 CACCAATGCATTGAAAACTGATTTCTTTTCGGGATTTTAATTTTGAAAACCAGAAATT-TATTTT
* * * * * * * * *
139478 TGTAGATTTAGGTGATTTTGAAGTTTCATTTTAGAAATTGACTGATACGGACAAGAATT-T-AAA
314 T-TCGATTTAGATGATTTTGTAGTTTCGTGTTAGAAATTTATTTATACGGACGAG-ATTATCAAA
** ** *
139541 AGGAAAGCAAGGCAAATCCAAGACAATTTACAAACTTAAAAGATCAATTCATAGTTATTTTAGTG
377 AGGAAAGCAAGGCAAATCCAAGACAATTTACAAACCCAAAAGATCAATTCGCAGTTATTTCAGTG
* * * *
139606 TAAAACAATCTGAGCTCTC-T-CATGCCATCCTATCCTAAATCAGATGTTTTCCTTAACAGATGA
442 TAAAACAATCCGAGCTCTCGTACA--CCATCCGATCCTAAATCAGATATTTTCCTGAACAGATGA
* * * *
139669 AGGTAAGACAAAGTGTGAGTTACCAAGCAGCGCGTATAACCAGGCTCAAAGACAAATAAGCAGAG
505 AGGTAAGACAAAGGGTGAGTTACCAAGCACCGCGTATAACCAGACTCAAATACAAATAAGCAGAG
* *
139734 CATACTATATAACTCGTAGTAAC-ACAAATAAATTAAGAGCAGTTGTATAACTAGTACGGACAAC
570 CATACTATATAACTCGTAGTAACGA-AAATAACTTAAGAGCAGTTGTATAACCAGTACGGACAAC
* * * * * *
139798 TCTAGAGTATTACAGAGCTTTAATCAGAGGTAGTACAACATAACAAAGCATAACATAATAGAGCA
634 TCTAGAGTATCACAGAGATTTAATCAAAGGTAGTACAATAGAACAAAGCAAAACATAATAGAGCA
* * * * *
139863 GAAGAAAATTGAATGGTACAGAGCAGAGCAGAACT
699 GAACAAAGTTGAATGGTACATAGCAAAGCATAACT
* * *
139898 GAATAGAACATAACAAAACCGAATGATACAAGACAGAGCAGAATTGAATAGA-ATAGACCAAAAC
1 GAACAGAACAAAACAAAA-CG---G-----AG-CAGAGCAGAA---AATA-ACAT-G-----TA-
* *** * *
139962 GGAGCAGAGCAGAATAGAACATGTAGTTTTTTGCAGATGCAGTATTTGTCA-AACAGATCAGAAC
45 TGTTTA-TGCAG-AT-G--CA-GTA--TTTTT-CA-A-ACAG-A----TCAGAAC-G--CAG---
* * ** * *
140026 ACAGATTTATCAAAAATAGTCTATCCAAACTCCGTTACACACAAAATTAGAGTTCTCCCCCAAAC
88 --A--TTTATCAGAAACAGTCTTCCCAAACTCCGTTACACACAAAAATAGAGTTCT-CCCCGAAC
* * * *
140091 TCATCCATCCAAAGCACACCAAA-AAAGTCATCCCAGGTTGATACCACTAAATTTAACACCCTAA
148 TCATCCATCCAAAACACA-CAAAGAAAGTCATCCCGGGTTGATACCACTAAATGTAACACCCCAA
* ** *
140155 ACCCGACCTAGAAGTTTAAGCCAAACTTGGACGAGTTACACCAATGCATTGTGAATTGATTTCTT
212 ACCCGACCTAGAAGTTTAAGCCGAACTTGGACGAGTTACACCAATGCATTGAAAACTGATTTCTT
* * * * * *
140220 TTTGGTATTTTAATTTTGAAAACAAGAAATTCATTTTTGTTGATTTTG-TGATTTTGTAGTTTCG
277 TTCGGGATTTTAATTTTGAAAACCAGAAATTTATTTTT-TCGATTTAGATGATTTTGTAGTTTCG
* * * * * * *
140284 TATTAGAAATTGACTAATACGGATGA-ATTTATCAAAAAGACAGCAAGGCAAATCCAAGACAATT
341 TGTTAGAAATTTATTTATACGGACGAGA-TTATCAAAAGGAAAGCAAGGCAAATCCAAGACAATT
* *** * ** * * * *
140348 TACAAACCCAAAAGATCAATTCGTAGTTATTTTTCTGTAAAATAATCTAAGCTCTCATGCGCCGT
405 TACAAACCCAAAAGATCAATTCGCAGTTATTTCAGTGTAAAACAATCCGAGCTCTCGTACACCAT
* * * * * * *
140413 CTGATCCTAGATCAAATGTTTTCTTGGACAGATGAAGTTAAGACAAAGGGTGAGTTACCAAGCAC
470 CCGATCCTAAATCAGATATTTTCCTGAACAGATGAAGGTAAGACAAAGGGTGAGTTACCAAGCAC
* * * * * * * * *
140478 TGCATATATCCAGGCTCAAATACAAATAAGTAGAACGTACTATATAACTCGTAGTAATGCAAATA
535 CGCGTATAACCAGACTCAAATACAAATAAGCAGAGCATACTATATAACTCGTAGTAACGAAAATA
* * * * * *
140543 ACTTAAGAGTAG-TGTATAACCACTACGAATAACACTAGAGTATCACAGAGCTTTAATCAAAGGT
600 ACTTAAGAGCAGTTGTATAACCAGTACGGACAACTCTAGAGTATCACAGAGATTTAATCAAAGGT
* * ** * * * * *
140607 AGTTCAACAGAACAAAGCAAAACATAATAGAGCTTAACAAAATCGAATGGTACAGAGCAGAGCAG
665 AGTACAATAGAACAAAGCAAAACATAATAGAGCAGAACAAAGTTGAATGGTACATAGCAAAGCAT
140672 AACT
730 AACT
* * * * * * * *
140676 GAACAGAACATAACAAAATGGAGCAGAGCAGAACAGAACATGTATGTATATGTAGATGCAATACT
1 GAACAGAACAAAACAAAACGGAGCAGAGCAGAAAATAACATGTATGTTTATGCAGATGCAGTATT
* * *
140741 TTTCAAATAGATCAGAATGTAGATTTATCAGAAACAGTCTTCCCAAACTCCGTTACACTA-AAAA
66 TTTCAAACAGATCAGAACGCAGATTTATCAGAAACAGTCTTCCCAAACTCCGTTACAC-ACAAAA
** ** * *
140805 ATAGAGGCCTCCTTTGAACTCATCCATCCAAAACACACCAAA-AAAGTCATCCTGGGTTTATACC
130 ATAGAGTTCTCC-CCGAACTCATCCATCCAAAACACA-CAAAGAAAGTCATCCCGGGTTGATACC
* * * * *
140869 ACTACATCTAACACCCCAAACCTGACCT-GAAAGTTTAAGCCAAACTTGAACGAGTTACACCAAT
193 ACTAAATGTAACACCCCAAACCCGACCTAG-AAGTTTAAGCCGAACTTGGACGAGTTACACCAAT
* * *
140933 GCATTGAAAACTAATTTTTTTTCGGGATTTTAATTTTGAAAACCACAAA-TTAGTTTTTGTCGAT
257 GCATTGAAAACTGATTTCTTTTCGGGATTTTAATTTTGAAAACCAGAAATTTA-TTTTT-TCGAT
* * ** *
140997 TTAGGTGATTTTTTAGTTTCGTGTTAGAAATTTATTTATATAGACGAGATTATAAAAAGGAAAGC
320 TTAGATGATTTTGTAGTTTCGTGTTAGAAATTTATTTATACGGACGAGATTATCAAAAGGAAAGC
* * *
141062 AAGGCAAATCCAAGAAAATTTACAAACTCAAAAGATCAATTCGCAGTTATTTTAGTGTAAAACAA
385 AAGGCAAATCCAAGACAATTTACAAACCCAAAAGATCAATTCGCAGTTATTTCAGTGTAAAACAA
* * * ** * * * *
141127 TCTGAGCTCTCGTACGCCGTTGGATCCTAAATCAGCTGTTTTTCTGAACAGATGAAGGTAAGAAA
450 TCCGAGCTCTCGTACACCATCCGATCCTAAATCAGATATTTTCCTGAACAGATGAAGGTAAGACA
* * * *
141192 AAGGGTGAGTTACGAAGCACCGTGTATAACCAGGCTCAAATACAAATAAGTAGAGCATACTATAT
515 AAGGGTGAGTTACCAAGCACCGCGTATAACCAGACTCAAATACAAATAAGCAGAGCATACTATAT
* *
141257 AACTCGTAGTAAC-ACAAATAACTTAAGAGCAGTTGCATAACCAGTACGAACAACTCTAGAGTAT
580 AACTCGTAGTAACGA-AAATAACTTAAGAGCAGTTGTATAACCAGTACGGACAACTCTAGAGTAT
* * * * * *
141321 CACAGAGACTTAATCAAAGGTAGTACAACAGAACAAGGAAAAAAAGTATATAGA--AGAACAAAA
644 CACAGAGATTTAATCAAAGGTAGTACAATAGAACAAAGCAAAACA-TA-ATAGAGCAGAACAAAG
*** * * * * *
141384 CAAAATGGTACAGAGCAGAGTAGACCT
707 TTGAATGGTACATAGCAAAGCATAACT
* * * * * *
141411 GAACAGAACAGAACAAAACAGAGCAAAGCA-AAACAGAACATGTATGTTTATGCAGTTGAAGTAT
1 GAACAGAACAAAACAAAACGGAGCAGAGCAGAAA-ATAACATGTATGTTTATGCAGATGCAGTAT
* * * * * * * *
141475 TTTTCAAATAGATCAGAATGTAGATTTATCAGATACAGTCTTTCCAAACTCTGATACACATAAAA
65 TTTTCAAACAGATCAGAACGCAGATTTATCAGAAACAGTCTTCCCAAACTCCGTTACACACAAAA
* * ** * * ** *
141540 ATATAGTTTTATCTGAAAATCATCCATCCAAAACACACTGAGAAAGTCATCCCGGGTTGATGCCA
130 ATAGAGTTCTCCCCG-AACTCATCCATCCAAAACACACAAAGAAAGTCATCCCGGGTTGATACCA
* * * **
141605 CTAAATGTAACACACCAAATCCGACCT-GAAAGTTTAAGCCAAACTTGGACGAGTTACAATAATG
194 CTAAATGTAACACCCCAAACCCGACCTAG-AAGTTTAAGCCGAACTTGGACGAGTTACACCAATG
* *
141669 CATTGAAAACTGATTTCCTTTT-GGGATTTTAATTTTGAAAACTAGAAATTCATTTTTCTCGATT
258 CATTGAAAACTGATTT-CTTTTCGGGATTTTAATTTTGAAAACCAGAAATTTATTTTT-TCGATT
* * * * *
141733 TAGGA-AATTTTATAGTTTTGTGTTAGAAATTTATCTATACGAACGAGATTATCAAAAGGAAAGC
321 TA-GATGATTTTGTAGTTTCGTGTTAGAAATTTATTTATACGGACGAGATTATCAAAAGGAAAGC
* * * *
141797 AAGGCAAATCCAAGACAATTTACAAACCCTAAAGATCAATTCGTAATTATTTTAGTGTAAAACAA
385 AAGGCAAATCCAAGACAATTTACAAACCCAAAAGATCAATTCGCAGTTATTTCAGTGTAAAACAA
* ** * *
141862 TCCGAGCTCTCGTACACCGTTGGATCCTAAATCAGATGTTTTCCTGAACAGAAGAAGGTAAGACA
450 TCCGAGCTCTCGTACACCATCCGATCCTAAATCAGATATTTTCCTGAACAGATGAAGGTAAGACA
* * * * * * * *
141927 GAGGGTTAGTTACCCAA-CACCTCGTATAACTAGGCTCAAATACAAATAAGTAGGGAATACTATA
515 AAGGGTGAGTTA-CCAAGCACCGCGTATAACCAGACTCAAATACAAATAAGCAGAGCATACTATA
* ** ** *
141991 TAAGTCGTAGTAAC-ACAAATAACTTAAGAGCAGTTGTAGCACCAGTAAAGACAACTCTTGAGTA
579 TAACTCGTAGTAACGA-AAATAACTTAAGAGCAGTTGTATAACCAGTACGGACAACTCTAGAGTA
* * * * * *
142055 TAACAGGGATTTAATCAAATGTAGTACAATAGAACAAAGCAAAAAATAATGGAGTAGAACAAAAC
643 TCACAGAGATTTAATCAAAGGTAGTACAATAGAACAAAGCAAAACATAATAGAGCAGAAC-AAA-
* * * * *
142120 TGAATGTTATAGAGTAGAACAGAACAGAACAAAACTGAATGATACAAAACAGAGCA
706 -G-TTG-AAT-G-GT---AC---ATAG--C---A---AA-G---C---ATA-A-CT
* *
142176 GAACAGAACAAAACAGAACAAAGCGGA-CTAGAGCAGAACATAACATGTCTGTTTATGCAGATGC
1 GAACAGAACAAAAC---A-AAA-CGGAGC-AGAGCAGAAAATAACATGTATGTTTATGCAGATGC
* * * ** * *
142240 GGTATTTTTTAAACAGATCAGAATGCAGATTTATCAGGTACAGTCTTCCCAAACTCTGTTATACA
60 AGTATTTTTCAAACAGATCAGAACGCAGATTTATCAGAAACAGTCTTCCCAAACTCCGTTACACA
*
142305 CAAAAATAGAGTTCTCCCCCGAACTCATCCATCCAAAACACACCAAGAAAGT
125 CAAAAATAGAGTTCT-CCCCGAACTCATCCATCCAAAACACACAAAGAAAGT
142357 TGTAACAGCC
Statistics
Matches: 6122, Mismatches: 1076, Indels: 648
0.78 0.14 0.08
Matches are distributed among these distances:
676 4 0.00
677 5 0.00
678 11 0.00
679 89 0.01
680 93 0.02
681 148 0.02
682 10 0.00
683 7 0.00
684 9 0.00
685 7 0.00
687 5 0.00
688 5 0.00
689 4 0.00
690 17 0.00
691 7 0.00
693 5 0.00
694 14 0.00
695 2 0.00
696 8 0.00
697 1 0.00
698 9 0.00
699 6 0.00
700 2 0.00
701 4 0.00
702 12 0.00
703 4 0.00
704 9 0.00
705 5 0.00
706 5 0.00
707 6 0.00
708 3 0.00
709 3 0.00
710 8 0.00
711 10 0.00
712 28 0.00
713 142 0.02
714 14 0.00
715 431 0.07
716 17 0.00
717 3 0.00
718 1 0.00
719 5 0.00
720 11 0.00
721 3 0.00
722 5 0.00
723 9 0.00
724 7 0.00
725 240 0.04
726 404 0.07
727 5 0.00
728 5 0.00
729 6 0.00
730 87 0.01
731 113 0.02
732 91 0.01
733 214 0.03
734 432 0.07
735 1193 0.19
736 245 0.04
737 210 0.03
738 19 0.00
739 99 0.02
740 93 0.02
741 1 0.00
742 6 0.00
743 4 0.00
744 5 0.00
745 6 0.00
746 2 0.00
747 8 0.00
748 7 0.00
749 2 0.00
750 9 0.00
751 1 0.00
752 4 0.00
753 9 0.00
754 5 0.00
755 287 0.05
756 91 0.01
757 245 0.04
758 7 0.00
759 2 0.00
760 2 0.00
762 5 0.00
763 4 0.00
764 3 0.00
765 21 0.00
766 1 0.00
768 11 0.00
769 8 0.00
770 129 0.02
771 4 0.00
772 3 0.00
774 1 0.00
776 1 0.00
777 4 0.00
778 163 0.03
779 389 0.06
780 2 0.00
781 1 0.00
ACGTcount: A:0.40, C:0.18, G:0.17, T:0.25
Consensus pattern (733 bp):
GAACAGAACAAAACAAAACGGAGCAGAGCAGAAAATAACATGTATGTTTATGCAGATGCAGTATT
TTTCAAACAGATCAGAACGCAGATTTATCAGAAACAGTCTTCCCAAACTCCGTTACACACAAAAA
TAGAGTTCTCCCCGAACTCATCCATCCAAAACACACAAAGAAAGTCATCCCGGGTTGATACCACT
AAATGTAACACCCCAAACCCGACCTAGAAGTTTAAGCCGAACTTGGACGAGTTACACCAATGCAT
TGAAAACTGATTTCTTTTCGGGATTTTAATTTTGAAAACCAGAAATTTATTTTTTCGATTTAGAT
GATTTTGTAGTTTCGTGTTAGAAATTTATTTATACGGACGAGATTATCAAAAGGAAAGCAAGGCA
AATCCAAGACAATTTACAAACCCAAAAGATCAATTCGCAGTTATTTCAGTGTAAAACAATCCGAG
CTCTCGTACACCATCCGATCCTAAATCAGATATTTTCCTGAACAGATGAAGGTAAGACAAAGGGT
GAGTTACCAAGCACCGCGTATAACCAGACTCAAATACAAATAAGCAGAGCATACTATATAACTCG
TAGTAACGAAAATAACTTAAGAGCAGTTGTATAACCAGTACGGACAACTCTAGAGTATCACAGAG
ATTTAATCAAAGGTAGTACAATAGAACAAAGCAAAACATAATAGAGCAGAACAAAGTTGAATGGT
ACATAGCAAAGCATAACT
Found at i:136272 original size:5 final size:5
Alignment explanation
Indices: 136248--136300 Score: 52
Period size: 5 Copynumber: 10.6 Consensus size: 5
136238 ACTTAATGGT
* * * ** *
136248 ACAGA GCAGA ACTGA ACAGA GCAGA ACAGA ATTGA ACAGA ACAGA ACAAA
1 ACAGA ACAGA ACAGA ACAGA ACAGA ACAGA ACAGA ACAGA ACAGA ACAGA
136298 ACA
1 ACA
136301 AAACGGTGCA
Statistics
Matches: 37, Mismatches: 11, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
5 37 1.00
ACGTcount: A:0.55, C:0.19, G:0.21, T:0.06
Consensus pattern (5 bp):
ACAGA
Found at i:139903 original size:45 final size:45
Alignment explanation
Indices: 139854--139961 Score: 119
Period size: 45 Copynumber: 2.4 Consensus size: 45
139844 AGCATAACAT
* * ** *
139854 AATAGAGCAGAAGAAAATTGAATGGTAC-AGAGCAGAGCAGAACTG
1 AATAGAACAGAACAAAACCGAATGATACAAGA-CAGAGCAGAACTG
* *
139899 AATAGAACATAACAAAACCGAATGATACAAGACAGAGCAGAATTG
1 AATAGAACAGAACAAAACCGAATGATACAAGACAGAGCAGAACTG
* *
139944 AATAGAATAGACCAAAAC
1 AATAGAACAGAACAAAAC
139962 GGAGCAGAGC
Statistics
Matches: 52, Mismatches: 10, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
45 49 0.94
46 3 0.06
ACGTcount: A:0.52, C:0.14, G:0.21, T:0.13
Consensus pattern (45 bp):
AATAGAACAGAACAAAACCGAATGATACAAGACAGAGCAGAACTG
Found at i:141430 original size:15 final size:15
Alignment explanation
Indices: 141412--141450 Score: 53
Period size: 15 Copynumber: 2.6 Consensus size: 15
141402 AGTAGACCTG
141412 AACAGAACAGAA-CAA
1 AACAGAACA-AAGCAA
*
141427 AACAGAGCAAAGCAA
1 AACAGAACAAAGCAA
141442 AACAGAACA
1 AACAGAACA
141451 TGTATGTTTA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
14 2 0.10
15 19 0.90
ACGTcount: A:0.64, C:0.21, G:0.15, T:0.00
Consensus pattern (15 bp):
AACAGAACAAAGCAA
Found at i:142143 original size:5 final size:5
Alignment explanation
Indices: 142135--142195 Score: 52
Period size: 5 Copynumber: 12.2 Consensus size: 5
142125 GTTATAGAGT
* * * * *
142135 AGAAC AGAAC AGAAC AAAAC TGAA- TGATAC AAAAC AGAGC AGAAC AGAAC
1 AGAAC AGAAC AGAAC AGAAC AGAAC AGA-AC AGAAC AGAAC AGAAC AGAAC
*
142185 AAAAC AGAAC A
1 AGAAC AGAAC A
142196 AAGCGGACTA
Statistics
Matches: 44, Mismatches: 10, Indels: 4
0.76 0.17 0.07
Matches are distributed among these distances:
4 3 0.07
5 40 0.91
6 1 0.02
ACGTcount: A:0.61, C:0.18, G:0.16, T:0.05
Consensus pattern (5 bp):
AGAAC
Found at i:142156 original size:35 final size:35
Alignment explanation
Indices: 142110--142189 Score: 106
Period size: 35 Copynumber: 2.3 Consensus size: 35
142100 ATAATGGAGT
* * * **
142110 AGAACAAAACTGAATGTTATAGAGTAGAACAGAAC
1 AGAACAAAACTGAATGATACAAAACAGAACAGAAC
*
142145 AGAACAAAACTGAATGATACAAAACAGAGCAGAAC
1 AGAACAAAACTGAATGATACAAAACAGAACAGAAC
142180 AGAACAAAAC
1 AGAACAAAAC
142190 AGAACAAAGC
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
35 39 1.00
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.11
Consensus pattern (35 bp):
AGAACAAAACTGAATGATACAAAACAGAACAGAAC
Found at i:142185 original size:15 final size:15
Alignment explanation
Indices: 142137--142197 Score: 61
Period size: 15 Copynumber: 4.1 Consensus size: 15
142127 TATAGAGTAG
142137 AACAGAACAGAACAA
1 AACAGAACAGAACAA
* *
142152 AACTGAA-TGATACAA
1 AACAGAACAGA-ACAA
* *
142167 AACAGAGCAGAACAG
1 AACAGAACAGAACAA
*
142182 AACAAAACAGAACAA
1 AACAGAACAGAACAA
142197 A
1 A
142198 GCGGACTAGA
Statistics
Matches: 35, Mismatches: 9, Indels: 4
0.73 0.19 0.08
Matches are distributed among these distances:
14 2 0.06
15 31 0.89
16 2 0.06
ACGTcount: A:0.62, C:0.18, G:0.15, T:0.05
Consensus pattern (15 bp):
AACAGAACAGAACAA
Found at i:144719 original size:104 final size:104
Alignment explanation
Indices: 144580--144806 Score: 328
Period size: 104 Copynumber: 2.2 Consensus size: 104
144570 ATGACCTGGG
** * * **
144580 CACACGCCCATGTCCTTGCCTGTATGGCACACACGGTCTAGGCACATGCTTATGTCCCTGGCCGT
1 CACACGCCCATGTCCTTGCCCATATGGCACACACGGCCTAAGCACATGCCCATGTCCCTGGCCGT
144645 GTGGTCTTAAATCATAAATAGTGAGTTACACAGCCTCGA
66 GTGGTCTTAAATCATAAATAGTGAGTTACACAGCCTCGA
* * * *
144684 CACACGCTCATGTCCTTGCCCATATGGCCCACACGGCCTAAGCATATGCCCATGTCCCTGGTCGT
1 CACACGCCCATGTCCTTGCCCATATGGCACACACGGCCTAAGCACATGCCCATGTCCCTGGCCGT
** * *
144749 GTGGTCTTAAATCATAAATAGTGAGTTACATGGTCTGGA
66 GTGGTCTTAAATCATAAATAGTGAGTTACACAGCCTCGA
144788 CACACGCCCATGTCCTTGC
1 CACACGCCCATGTCCTTGC
144807 TCATGTGAGT
Statistics
Matches: 108, Mismatches: 15, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
104 108 1.00
ACGTcount: A:0.22, C:0.30, G:0.22, T:0.26
Consensus pattern (104 bp):
CACACGCCCATGTCCTTGCCCATATGGCACACACGGCCTAAGCACATGCCCATGTCCCTGGCCGT
GTGGTCTTAAATCATAAATAGTGAGTTACACAGCCTCGA
Found at i:156525 original size:174 final size:174
Alignment explanation
Indices: 156195--156540 Score: 387
Period size: 174 Copynumber: 2.0 Consensus size: 174
156185 CAGCAAGACT
* * * * * **
156195 TGATGCAATCTGCTCTACTGCCACTTTAGAGAGATAAGATCCATCATTTTGATTCGCTCCACTGC
1 TGATGCAATCCGCTCTACTGCAACTTCAGAGAGATAAGATCCATCATTTTAATCCGCTCCACTAA
* * **
156260 AACCTCAGGGAGATAGGATTGGTCAACTTCGATCTGCCCCACTGCAAATTCAGGGGTATAAGACC
66 AACCTCAGGGAGATAGGATTGATCAACTTCAATCTGCCCCACTGCAAACACAGGGGTATAAGACC
* * * **
156325 TGCTTACTCAGTCTGCTCTGCTGCAACTTCAGGGAGATAAGATC
131 TGCATACTCAGTCTACCCCACTGCAACTTCAGGGAGATAAGATC
* * * *
156369 TGATGCGATCCGCTCTACTGTAACTTCAGAGAGATAAGATCTATTATTTTAATCCGCTCCACTAA
1 TGATGCAATCCGCTCTACTGCAACTTCAGAGAGATAAGATCCATCATTTTAATCCGCTCCACTAA
* * *
156434 AACTTCAGGGAGATAGGATT-ATCAGA-TTCAATCTGCTCCACTGCAACCACAGGGAG-ATAAGA
66 AACCTCAGGGAGATAGGATTGATCA-ACTTCAATCTGCCCCACTGCAAACACAGGG-GTATAAGA
* *
156496 CCTGCCAT-CTTC-GATTTACCCCACTGCAACTTCAGGGGGATAAGA
129 CCTG-CATAC-TCAG-TCTACCCCACTGCAACTTCAGGGAGATAAGA
156541 CCTGCTTACT
Statistics
Matches: 142, Mismatches: 25, Indels: 10
0.80 0.14 0.06
Matches are distributed among these distances:
173 38 0.27
174 104 0.73
ACGTcount: A:0.28, C:0.25, G:0.20, T:0.27
Consensus pattern (174 bp):
TGATGCAATCCGCTCTACTGCAACTTCAGAGAGATAAGATCCATCATTTTAATCCGCTCCACTAA
AACCTCAGGGAGATAGGATTGATCAACTTCAATCTGCCCCACTGCAAACACAGGGGTATAAGACC
TGCATACTCAGTCTACCCCACTGCAACTTCAGGGAGATAAGATC
Found at i:156582 original size:44 final size:45
Alignment explanation
Indices: 156467--156585 Score: 145
Period size: 44 Copynumber: 2.7 Consensus size: 45
156457 AGATTCAATC
*
156467 TGCTCCACTGCAACCACAGGGAGATAAGACCTGCCATCTTCGATT
1 TGCTCCACTGCAACCTCAGGGAGATAAGACCTGCCATCTTCGATT
* * * * *
156512 TACCCCACTGCAACTTCAGGGGGATAAGACCTG-CTTAC-TC-AGTT
1 TGCTCCACTGCAACCTCAGGGAGATAAGACCTGCCAT-CTTCGA-TT
156556 TGCTCCACTGCAACCTCAGGGAGATAAGAC
1 TGCTCCACTGCAACCTCAGGGAGATAAGAC
156586 TCGGTGGCTT
Statistics
Matches: 62, Mismatches: 10, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
43 1 0.02
44 32 0.52
45 29 0.47
ACGTcount: A:0.27, C:0.30, G:0.21, T:0.22
Consensus pattern (45 bp):
TGCTCCACTGCAACCTCAGGGAGATAAGACCTGCCATCTTCGATT
Found at i:158046 original size:7 final size:7
Alignment explanation
Indices: 158027--158068 Score: 52
Period size: 7 Copynumber: 6.0 Consensus size: 7
158017 TTAGCCTCTC
158027 CATTTTT
1 CATTTTT
158034 -ACTTTTT
1 CA-TTTTT
158041 CATTTTT
1 CATTTTT
158048 CA-TTTT
1 CATTTTT
158054 CATTTTT
1 CATTTTT
158061 CATCTTTT
1 CAT-TTTT
158069 TTTTTGGAAT
Statistics
Matches: 31, Mismatches: 0, Indels: 7
0.82 0.00 0.18
Matches are distributed among these distances:
6 7 0.23
7 19 0.61
8 5 0.16
ACGTcount: A:0.14, C:0.17, G:0.00, T:0.69
Consensus pattern (7 bp):
CATTTTT
Found at i:158073 original size:13 final size:13
Alignment explanation
Indices: 158027--158063 Score: 56
Period size: 13 Copynumber: 2.8 Consensus size: 13
158017 TTAGCCTCTC
*
158027 CATTTTTACTTTTT
1 CATTTTT-CATTTT
158041 CATTTTTCATTTT
1 CATTTTTCATTTT
158054 CATTTTTCAT
1 CATTTTTCAT
158064 CTTTTTTTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
13 15 0.68
14 7 0.32
ACGTcount: A:0.16, C:0.16, G:0.00, T:0.68
Consensus pattern (13 bp):
CATTTTTCATTTT
Found at i:165187 original size:21 final size:21
Alignment explanation
Indices: 165157--165205 Score: 80
Period size: 21 Copynumber: 2.3 Consensus size: 21
165147 GCAGGTGTAG
*
165157 TCGTATGAGGGTGGACGTGGC
1 TCGTACGAGGGTGGACGTGGC
165178 TCGTACGAGGGTGGACGTGGC
1 TCGTACGAGGGTGGACGTGGC
*
165199 ACGTACG
1 TCGTACG
165206 GATGTGCTCG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.16, C:0.18, G:0.45, T:0.20
Consensus pattern (21 bp):
TCGTACGAGGGTGGACGTGGC
Found at i:174625 original size:25 final size:25
Alignment explanation
Indices: 174597--174661 Score: 87
Period size: 25 Copynumber: 2.6 Consensus size: 25
174587 CTGTACATGT
* *
174597 ATGCTCAC-TCGAGTTGTAAATTAGA
1 ATGCTCACAT-GAGCTGTAAATCAGA
174622 ATGCTCACATGAGCTGTAAATCAGA
1 ATGCTCACATGAGCTGTAAATCAGA
*
174647 ATGCTTACATGAGCT
1 ATGCTCACATGAGCT
174662 ATGAAAATGG
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
25 35 0.97
26 1 0.03
ACGTcount: A:0.32, C:0.18, G:0.20, T:0.29
Consensus pattern (25 bp):
ATGCTCACATGAGCTGTAAATCAGA
Found at i:175625 original size:76 final size:76
Alignment explanation
Indices: 175535--175690 Score: 276
Period size: 76 Copynumber: 2.1 Consensus size: 76
175525 TCTCAAAAAC
* *
175535 ATAAAAATTATTAAAAGTAGGGCCAAAATCACTTACCATTATTGTCCGATTGATGAAGAAGAAAA
1 ATAAAAATTATTAAAAATAGGGCCAAAATCACTTACCATTATTGTCCAATTGATGAAGAAGAAAA
*
175600 CTAAAAAGATG
66 CTAAAAAGAGG
*
175611 ATAAAAATTATTAAAAATAGGGCCAAAATCACTTACCATTATTGTCCAATTGATGAAGCAGAAAA
1 ATAAAAATTATTAAAAATAGGGCCAAAATCACTTACCATTATTGTCCAATTGATGAAGAAGAAAA
175676 CTAAAAAGAGG
66 CTAAAAAGAGG
175687 ATAA
1 ATAA
175691 CCAATTAACC
Statistics
Matches: 76, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
76 76 1.00
ACGTcount: A:0.49, C:0.12, G:0.15, T:0.24
Consensus pattern (76 bp):
ATAAAAATTATTAAAAATAGGGCCAAAATCACTTACCATTATTGTCCAATTGATGAAGAAGAAAA
CTAAAAAGAGG
Found at i:179767 original size:16 final size:15
Alignment explanation
Indices: 179746--179775 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
179736 CAAACATGCT
179746 TTAACACATTATCAAA
1 TTAACACATT-TCAAA
179762 TTAACACATTTCAA
1 TTAACACATTTCAA
179776 CAAGGCACCA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 4 0.29
16 10 0.71
ACGTcount: A:0.47, C:0.20, G:0.00, T:0.33
Consensus pattern (15 bp):
TTAACACATTTCAAA
Found at i:180925 original size:25 final size:25
Alignment explanation
Indices: 180895--180957 Score: 108
Period size: 25 Copynumber: 2.5 Consensus size: 25
180885 TTGTACATGT
*
180895 ATGCTCACATGAGTTGTAAATTAGA
1 ATGCTCACATGAGTTATAAATTAGA
180920 ATGCTCACATGAGTTATAAATTAGA
1 ATGCTCACATGAGTTATAAATTAGA
*
180945 ATGCTCATATGAG
1 ATGCTCACATGAG
180958 CTGTGAAAAT
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
25 36 1.00
ACGTcount: A:0.37, C:0.13, G:0.19, T:0.32
Consensus pattern (25 bp):
ATGCTCACATGAGTTATAAATTAGA
Found at i:190601 original size:40 final size:40
Alignment explanation
Indices: 190519--190601 Score: 123
Period size: 40 Copynumber: 2.1 Consensus size: 40
190509 TTCCCAGGAA
* *
190519 ATTTAAACTTGGTAGATGGTATAAGGTTCTTTTCCTTAGG
1 ATTTAAACTTGGTAGATGGTATAAGGTTCCTTTCCTCAGG
*
190559 ATTTAAACTTGGTAGATGGTATAAGG-TCCTTTCCATCGGG
1 ATTTAAACTTGGTAGATGGTATAAGGTTCCTTTCC-TCAGG
190599 ATT
1 ATT
190602 CAACCTTGAA
Statistics
Matches: 39, Mismatches: 3, Indels: 2
0.89 0.07 0.05
Matches are distributed among these distances:
39 7 0.18
40 32 0.82
ACGTcount: A:0.25, C:0.12, G:0.23, T:0.40
Consensus pattern (40 bp):
ATTTAAACTTGGTAGATGGTATAAGGTTCCTTTCCTCAGG
Found at i:191855 original size:61 final size:61
Alignment explanation
Indices: 191760--191881 Score: 235
Period size: 61 Copynumber: 2.0 Consensus size: 61
191750 AGGCACACAT
191760 GACTGAGTTTCCTCATCTTGCTCCAACCTCGACAGATGATCAACTATTTGATTTTCGACAC
1 GACTGAGTTTCCTCATCTTGCTCCAACCTCGACAGATGATCAACTATTTGATTTTCGACAC
*
191821 GACTGAGTTTCCTCATCTTGCTCCAACCTCGACAGATGATCAACTATTTGATTTTTGACAC
1 GACTGAGTTTCCTCATCTTGCTCCAACCTCGACAGATGATCAACTATTTGATTTTCGACAC
191882 CTTTTCTATC
Statistics
Matches: 60, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
61 60 1.00
ACGTcount: A:0.25, C:0.27, G:0.15, T:0.34
Consensus pattern (61 bp):
GACTGAGTTTCCTCATCTTGCTCCAACCTCGACAGATGATCAACTATTTGATTTTCGACAC
Found at i:198261 original size:37 final size:37
Alignment explanation
Indices: 198215--198295 Score: 135
Period size: 37 Copynumber: 2.2 Consensus size: 37
198205 CTATTCTCAG
* *
198215 TAGAATTCTAAATAAATAAAAAATGGTTCGAGTTATA
1 TAGACTTCTAAATAAATAAAAAATGGTTCAAGTTATA
*
198252 TAGACTTCTAAATAAATAAAAAATGGTTCAAGTTTTA
1 TAGACTTCTAAATAAATAAAAAATGGTTCAAGTTATA
198289 TAGACTT
1 TAGACTT
198296 GTTCAACAAA
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 41 1.00
ACGTcount: A:0.46, C:0.07, G:0.12, T:0.35
Consensus pattern (37 bp):
TAGACTTCTAAATAAATAAAAAATGGTTCAAGTTATA
Found at i:224288 original size:88 final size:88
Alignment explanation
Indices: 224162--229321 Score: 8891
Period size: 88 Copynumber: 58.7 Consensus size: 88
224152 GTCAGTACAA
* * * * * **
224162 GAAGGCAAGA-CT-TGTTTCTTCAACCAACTCCGCTACAACCGAGAGAGGCAACATTTGTGTCTT
1 GAAGGCAAGATCTAT-TGTCTTCAACCAGCTCCACCACAACCGAGGGAGGCAAGGTTTGTGTCTT
* *
224225 TGACCTGCTTCGCTGTCAATGCAG
65 CGATCTGCTTCGCTGTCAATGCAG
224249 GAAGGCAAGATCTATTGTCTTCAACCAGCTCCACCACAACCGAGGGAGGCAAGGTTTGTGTCTTC
1 GAAGGCAAGATCTATTGTCTTCAACCAGCTCCACCACAACCGAGGGAGGCAAGGTTTGTGTCTTC
* *
224314 GAACTGCTTCGCTGTCAATGTAG
66 GATCTGCTTCGCTGTCAATGCAG
* * * * *
224337 GAAGGTAAGATATTTTGTCTTCAACCAGCTCCATCACAACCGAGAGAGGCAAGGTTTGTGTCTTC
1 GAAGGCAAGATCTATTGTCTTCAACCAGCTCCACCACAACCGAGGGAGGCAAGGTTTGTGTCTTC
* *
224402 GACCTGCTTCGCTGTCAATACAG
66 GATCTGCTTCGCTGTCAATGCAG
*
224425 GAAGGCAAGATCTGTTGTCTTCAACCAGCTCCACCACAACCGAGGGAGGCAAGGTTTGTGTCTTC
1 GAAGGCAAGATCTATTGTCTTCAACCAGCTCCACCACAACCGAGGGAGGCAAGGTTTGTGTCTTC
224490 GATCTGCTTCGCTGTCAATGCAG
66 GATCTGCTTCGCTGTCAATGCAG
224513 GAAGGCAAGATCTATTGTCTTCAACCAGCTCCACCACAACCGAGGGAGGCAAGGTTTGTGTCTTC
1 GAAGGCAAGATCTATTGTCTTCAACCAGCTCCACCACAACCGAGGGAGGCAAGGTTTGTGTCTTC
224578 GATCTGCTTCGCTGTCAATGCAG
66 GATCTGCTTCGCTGTCAATGCAG
224601 GAAGGCAAGATCTATTGTCTTCAACCAGCTCCACCACAACCGAGGGAGGCAAGGTTTGTGTCTTC
1 GAAGGCAAGATCTATTGTCTTCAACCAGCTCCACCACAACCGAGGGAGGCAAGGTTTGTGTCTTC
224666 GATCTGCTTCGCTGTCAATGCAG
66 GATCTGCTTCGCTGTCAATGCAG
224689 GAAGGCAAGATCTATTGTCTTCAACCAGCTCCACCACAACCGAGGGAGGCAAGGTTTGTGTCTTC
1 GAAGGCAAGATCTATTGTCTTCAACCAGCTCCACCACAACCGAGGGAGGCAAGGTTTGTGTCTTC
224754 GATCTGCTTCGCTGTCAATGCAG
66 GATCTGCTTCGCTGTCAATGCAG
224777 GAAGGCAAGATCTATTGTCTTCAACCAGCTCCACCACAACCGAGGGAGGCAAGGTTTGTGTCTTC
1 GAAGGCAAGATCTATTGTCTTCAACCAGCTCCACCACAACCGAGGGAGGCAAGGTTTGTGTCTTC
224842 GATCTGCTTCGCTGTCAATGCAG
66 GATCTGCTTCGCTGTCAATGCAG
224865 GAAGGCAAGATCTATTGTCTTCAACCAGCTCCACCACAACCGAGGGAGGCAAGGTTTGTGTCTTC
1 GAAGGCAAGATCTATTGTCTTCAACCAGCTCCACCACAACCGAGGGAGGCAAGGTTTGTGTCTTC
224930 GATCTGCTTCGCTGTCAATGCAG
66 GATCTGCTTCGCTGTCAATGCAG
224953 GAAGGCAAGATCTATTGTCTTCAACCAGCTCCACCACAACCGAGGGAGGCAAGGTTTGTGTCTTC
1 GAAGGCAAGATCTATTGTCTTCAACCAGCTCCACCACAACCGAGGGAGGCAAGGTTTGTGTCTTC
225018 GATCTGCTTCGCTGTCAATGCAG
66 GATCTGCTTCGCTGTCAATGCAG
225041 GAAGGCAAGATCTATTGTCTTCAACCAGCTCCACCACAACCGAGGGAGGCAAGGTTTGTGTCTTC
1 GAAGGCAAGATCTATTGTCTTCAACCAGCTCCACCACAACCGAGGGAGGCAAGGTTTGTGTCTTC
225106 GATCTGCTTCGCTGTCAATGCAG
66 GATCTGCTTCGCTGTCAATGCAG
225129 GAAGGCAAGATCTATTGTCTTCAACCAGCTCCACCACAACCGAGGGAGGCAAGGTTTGTGTCTTC
1 GAAGGCAAGATCTATTGTCTTCAACCAGCTCCACCACAACCGAGGGAGGCAAGGTTTGTGTCTTC
225194 GATCTGCTTCGCTGTCAATGCAG
66 GATCTGCTTCGCTGTCAATGCAG
225217 GAAGGCAAGATCTATTGTCTTCAACCAGCTCCACCACAACCGAGGGAGGCAAGGTTTGTGTCTTC
1 GAAGGCAAGATCTATTGTCTTCAACCAGCTCCACCACAACCGAGGGAGGCAAGGTTTGTGTCTTC
225282 GATCTGCTTCGCTGTCAATGCAG
66 GATCTGCTTCGCTGTCAATGCAG
225305 GAAGGCAAGATCTATTGTCTTCAACCAGCTCCACCACAACCGAGGGAGGCAAGGTTTGTGTCTTC
1 GAAGGCAAGATCTATTGTCTTCAACCAGCTCCACCACAACCGAGGGAGGCAAGGTTTGTGTCTTC
225370 GATCTGCTTCGCTGTCAATGCAG
66 GATCTGCTTCGCTGTCAATGCAG
225393 GAAGGCAAGATCTATTGTCTTCAACCAGCTCCACCACAACCGAGGGAGGCAAGGTTTGTGTCTTC
1 GAAGGCAAGATCTATTGTCTTCAACCAGCTCCACCACAACCGAGGGAGGCAAGGTTTGTGTCTTC
225458 GATCTGCTTCGCTGTCAATGCAG
66 GATCTGCTTCGCTGTCAATGCAG
225481 GAAGGCAAGATCTATTGTCTTCAACCAGCTCCACCACAACCGAGGGAGGCAAGGTTTGTGTCTTC
1 GAAGGCAAGATCTATTGTCTTCAACCAGCTCCACCACAACCGAGGGAGGCAAGGTTTGTGTCTTC
225546 GATCTGCTTCGCTGTCAATGCAG
66 GATCTGCTTCGCTGTCAATGCAG
225569 GAAGGCAAGATCTATTGTCTTCAACCAGCTCCACCACAACCGAGGGAGGCAAGGTTTGTGTCTTC
1 GAAGGCAAGATCTATTGTCTTCAACCAGCTCCACCACAACCGAGGGAGGCAAGGTTTGTGTCTTC
225634 GATCTGCTTCGCTGTCAATGCAG
66 GATCTGCTTCGCTGTCAATGCAG
225657 GAAGGCAAGATCTATTGTCTTCAACCAGCTCCACCACAACCGAGGGAGGCAAGGTTTGTGTCTTC
1 GAAGGCAAGATCTATTGTCTTCAACCAGCTCCACCACAACCGAGGGAGGCAAGGTTTGTGTCTTC
225722 GATCTGCTTCGCTGTCAATGCAG
66 GATCTGCTTCGCTGTCAATGCAG
225745 GAAGGCAAGATCTATTGTCTTCAACCAGCTCCACCACAACCGAGGGAGGCAAGGTTTGTGTCTTC
1 GAAGGCAAGATCTATTGTCTTCAACCAGCTCCACCACAACCGAGGGAGGCAAGGTTTGTGTCTTC
225810 GATCTGCTTCGCTGTCAATGCAG
66 GATCTGCTTCGCTGTCAATGCAG
225833 GAAGGCAAGATCTATTGTCTTCAACCAGCTCCACCACAACCGAGGGAGGCAAGGTTTGTGTCTTC
1 GAAGGCAAGATCTATTGTCTTCAACCAGCTCCACCACAACCGAGGGAGGCAAGGTTTGTGTCTTC
225898 GATCTGCTTCGCTGTCAATGCAG
66 GATCTGCTTCGCTGTCAATGCAG
225921 GAAGGCAAGATCTATTGTCTTCAACCAGCTCCACCACAACCGAGGGAGGCAAGGTTTGTGTCTTC
1 GAAGGCAAGATCTATTGTCTTCAACCAGCTCCACCACAACCGAGGGAGGCAAGGTTTGTGTCTTC
225986 GATCTGCTTCGCTGTCAATGCAG
66 GATCTGCTTCGCTGTCAATGCAG
226009 GAAGGCAAGATCTATTGTCTTCAACCAGCTCCACCACAACCGAGGGAGGCAAGGTTTGTGTCTTC
1 GAAGGCAAGATCTATTGTCTTCAACCAGCTCCACCACAACCGAGGGAGGCAAGGTTTGTGTCTTC
226074 GATCTGCTTCGCTGTCAATGCAG
66 GATCTGCTTCGCTGTCAATGCAG
226097 GAAGGCAAGATCTATTGTCTTCAACCAGCTCCACCACAACCGAGGGAGGCAAGGTTTGTGTCTTC
1 GAAGGCAAGATCTATTGTCTTCAACCAGCTCCACCACAACCGAGGGAGGCAAGGTTTGTGTCTTC
226162 GATCTGCTTCGCTGTCAATGCAG
66 GATCTGCTTCGCTGTCAATGCAG
226185 GAAGGCAAGATCTATTGTCTTCAACCAGCTCCACCACAACCGAGGGAGGCAAGGTTTGTGTCTTC
1 GAAGGCAAGATCTATTGTCTTCAACCAGCTCCACCACAACCGAGGGAGGCAAGGTTTGTGTCTTC
226250 GATCTGCTTCGCTGTCAATGCAG
66 GATCTGCTTCGCTGTCAATGCAG
226273 GAAGGCAAGATCTATTGTCTTCAACCAGCTCCACCACAACCGAGGGAGGCAAGGTTTGTGTCTTC
1 GAAGGCAAGATCTATTGTCTTCAACCAGCTCCACCACAACCGAGGGAGGCAAGGTTTGTGTCTTC
226338 GATCTGCTTCGCTGTCAATGCAG
66 GATCTGCTTCGCTGTCAATGCAG
226361 GAAGGCAAGATCTATTGTCTTCAACCAGCTCCACCACAACCGAGGGAGGCAAGGTTTGTGTCTTC
1 GAAGGCAAGATCTATTGTCTTCAACCAGCTCCACCACAACCGAGGGAGGCAAGGTTTGTGTCTTC
226426 GATCTGCTTCGCTGTCAATGCAG
66 GATCTGCTTCGCTGTCAATGCAG
226449 GAAGGCAAGATCTATTGTCTTCAACCAGCTCCACCACAACCGAGGGAGGCAAGGTTTGTGTCTTC
1 GAAGGCAAGATCTATTGTCTTCAACCAGCTCCACCACAACCGAGGGAGGCAAGGTTTGTGTCTTC
226514 GATCTGCTTCGCTGTCAATGCAG
66 GATCTGCTTCGCTGTCAATGCAG
226537 GAAGGCAAGATCTATTGTCTTCAACCAGCTCCACCACAACCGAGGGAGGCAAGGTTTGTGTCTTC
1 GAAGGCAAGATCTATTGTCTTCAACCAGCTCCACCACAACCGAGGGAGGCAAGGTTTGTGTCTTC
226602 GATCTGCTTCGCTGTCAATGCAG
66 GATCTGCTTCGCTGTCAATGCAG
226625 GAAGGCAAGATCTATTGTCTTCAACCAGCTCCACCACAACCGAGGGAGGCAAGGTTTGTGTCTTC
1 GAAGGCAAGATCTATTGTCTTCAACCAGCTCCACCACAACCGAGGGAGGCAAGGTTTGTGTCTTC
226690 GATCTGCTTCGCTGTCAATGCAG
66 GATCTGCTTCGCTGTCAATGCAG
226713 GAAGGCAAGATCTATTGTCTTCAACCAGCTCCACCACAACCGAGGGAGGCAAGGTTTGTGTCTTC
1 GAAGGCAAGATCTATTGTCTTCAACCAGCTCCACCACAACCGAGGGAGGCAAGGTTTGTGTCTTC
226778 GATCTGCTTCGCTGTCAATGCAG
66 GATCTGCTTCGCTGTCAATGCAG
226801 GAAGGCAAGATCTATTGTCTTCAACCAGCTCCACCACAACCGAGGGAGGCAAGGTTTGTGTCTTC
1 GAAGGCAAGATCTATTGTCTTCAACCAGCTCCACCACAACCGAGGGAGGCAAGGTTTGTGTCTTC
226866 GATCTGCTTCGCTGTCAATGCAG
66 GATCTGCTTCGCTGTCAATGCAG
226889 GAAGGCAAGATCTATTGTCTTCAACCAGCTCCACCACAACCGAGGGAGGCAAGGTTTGTGTCTTC
1 GAAGGCAAGATCTATTGTCTTCAACCAGCTCCACCACAACCGAGGGAGGCAAGGTTTGTGTCTTC
226954 GATCTGCTTCGCTGTCAATGCAG
66 GATCTGCTTCGCTGTCAATGCAG
226977 GAAGGCAAGATCTATTGTCTTCAACCAGCTCCACCACAACCGAGGGAGGCAAGGTTTGTGTCTTC
1 GAAGGCAAGATCTATTGTCTTCAACCAGCTCCACCACAACCGAGGGAGGCAAGGTTTGTGTCTTC
227042 GATCTGCTTCGCTGTCAATGCAG
66 GATCTGCTTCGCTGTCAATGCAG
227065 GAAGGCAAGATCTATTGTCTTCAACCAGCTCCACCACAACCGAGGGAGGCAAGGTTTGTGTCTTC
1 GAAGGCAAGATCTATTGTCTTCAACCAGCTCCACCACAACCGAGGGAGGCAAGGTTTGTGTCTTC
227130 GATCTGCTTCGCTGTCAATGCAG
66 GATCTGCTTCGCTGTCAATGCAG
227153 GAAGGCAAGATCTATTGTCTTCAACCAGCTCCACCACAACCGAGGGAGGCAAGGTTTGTGTCTTC
1 GAAGGCAAGATCTATTGTCTTCAACCAGCTCCACCACAACCGAGGGAGGCAAGGTTTGTGTCTTC
227218 GATCTGCTTCGCTGTCAATGCAG
66 GATCTGCTTCGCTGTCAATGCAG
227241 GAAGGCAAGATCTATTGTCTTCAACCAGCTCCACCACAACCGAGGGAGGCAAGGTTTGTGTCTTC
1 GAAGGCAAGATCTATTGTCTTCAACCAGCTCCACCACAACCGAGGGAGGCAAGGTTTGTGTCTTC
227306 GATCTGCTTCGCTGTCAATGCAG
66 GATCTGCTTCGCTGTCAATGCAG
227329 GAAGGCAAGATCTATTGTCTTCAACCAGCTCCACCACAACCGAGGGAGGCAAGGTTTGTGTCTTC
1 GAAGGCAAGATCTATTGTCTTCAACCAGCTCCACCACAACCGAGGGAGGCAAGGTTTGTGTCTTC
227394 GATCTGCTTCGCTGTCAATGCAG
66 GATCTGCTTCGCTGTCAATGCAG
227417 GAAGGCAAGATCTATTGTCTTCAACCAGCTCCACCACAACCGAGGGAGGCAAGGTTTGTGTCTTC
1 GAAGGCAAGATCTATTGTCTTCAACCAGCTCCACCACAACCGAGGGAGGCAAGGTTTGTGTCTTC
227482 GATCTGCTTCGCTGTCAATGCAG
66 GATCTGCTTCGCTGTCAATGCAG
227505 GAAGGCAAGATCTATTGTCTTCAACCAGCTCCACCACAACCGAGGGAGGCAAGGTTTGTGTCTTC
1 GAAGGCAAGATCTATTGTCTTCAACCAGCTCCACCACAACCGAGGGAGGCAAGGTTTGTGTCTTC
227570 GATCTGCTTCGCTGTCAATGCAG
66 GATCTGCTTCGCTGTCAATGCAG
227593 GAAGGCAAGATCTATTGTCTTCAACCAGCTCCACCACAACCGAGGGAGGCAAGGTTTGTGTCTTC
1 GAAGGCAAGATCTATTGTCTTCAACCAGCTCCACCACAACCGAGGGAGGCAAGGTTTGTGTCTTC
227658 GATCTGCTTCGCTGTCAATGCAG
66 GATCTGCTTCGCTGTCAATGCAG
227681 GAAGGCAAGATCTATTGTCTTCAACCAGCTCCACCACAACCGAGGGAGGCAAGGTTTGTGTCTTC
1 GAAGGCAAGATCTATTGTCTTCAACCAGCTCCACCACAACCGAGGGAGGCAAGGTTTGTGTCTTC
227746 GATCTGCTTCGCTGTCAATGCAG
66 GATCTGCTTCGCTGTCAATGCAG
227769 GAAGGCAAGATCTATTGTCTTCAACCAGCTCCACCACAACCGAGGGAGGCAAGGTTTGTGTCTTC
1 GAAGGCAAGATCTATTGTCTTCAACCAGCTCCACCACAACCGAGGGAGGCAAGGTTTGTGTCTTC
227834 GATCTGCTTCGCTGTCAATGCAG
66 GATCTGCTTCGCTGTCAATGCAG
227857 GAAGGCAAGATCTATTGTCTTCAACCAGCTCCACCACAACCGAGGGAGGCAAGGTTTGTGTCTTC
1 GAAGGCAAGATCTATTGTCTTCAACCAGCTCCACCACAACCGAGGGAGGCAAGGTTTGTGTCTTC
227922 GATCTGCTTCGCTGTCAATGCAG
66 GATCTGCTTCGCTGTCAATGCAG
227945 GAAGGCAAGATCTATTGTCTTCAACCAGCTCCACCACAACCGAGGGAGGCAAGGTTTGTGTCTTC
1 GAAGGCAAGATCTATTGTCTTCAACCAGCTCCACCACAACCGAGGGAGGCAAGGTTTGTGTCTTC
228010 GATCTGCTTCGCTGTCAATGCAG
66 GATCTGCTTCGCTGTCAATGCAG
228033 GAAGGCAAGATCTATTGTCTTCAACCAGCTCCACCACAACCGAGGGAGGCAAGGTTTGTGTCTTC
1 GAAGGCAAGATCTATTGTCTTCAACCAGCTCCACCACAACCGAGGGAGGCAAGGTTTGTGTCTTC
228098 GATCTGCTTCGCTGTCAATGCAG
66 GATCTGCTTCGCTGTCAATGCAG
* * * * *
228121 GAAGGCAAGATCTGTTGTCTTCATCCGGCTCCATCACAACCGAGGGAGGCAAGGTTGGTGTCTTC
1 GAAGGCAAGATCTATTGTCTTCAACCAGCTCCACCACAACCGAGGGAGGCAAGGTTTGTGTCTTC
* * * **
228186 GATTTGATTCGCTATCAATGTTG
66 GATCTGCTTCGCTGTCAATGCAG
* * * * *
228209 GACGGCAAGGTCTTTTGTCTTCAACCAGCTCCATCACAACCGAGGGACGCAAGGTTTGTGTCTTC
1 GAAGGCAAGATCTATTGTCTTCAACCAGCTCCACCACAACCGAGGGAGGCAAGGTTTGTGTCTTC
* *
228274 GATCTGCTTTGCTGTTAATGCAG
66 GATCTGCTTCGCTGTCAATGCAG
* ** *
228297 GAAGGCAAGATCGT-TTGTCTTCAACCAGCTTCATAACAACCGAGAGAGGCAAGGTTTGTGTCTT
1 GAAGGCAAGATC-TATTGTCTTCAACCAGCTCCACCACAACCGAGGGAGGCAAGGTTTGTGTCTT
* *
228361 CGACCTGCTTCGCTGACAATGCAG
65 CGATCTGCTTCGCTGTCAATGCAG
* * * *
228385 GAAGGCAAGATCTTTTGTCTTCAACCAACTCTATCACAACCGAGGGAGGCAAGGTTTGTGTCTTC
1 GAAGGCAAGATCTATTGTCTTCAACCAGCTCCACCACAACCGAGGGAGGCAAGGTTTGTGTCTTC
* *
228450 GATCTACTTTGCTGTCAATGCCA-
66 GATCTGCTTCGCTGTCAATG-CAG
* * * ** * *
228473 GAAGGCCAGATCTTTTGTCTTCAACCCGCT-CATTACAACCGAGAGAGGTAAGGTTTGTGTCTTC
1 GAAGGCAAGATCTATTGTCTTCAACCAGCTCCACCACAACCGAGGGAGGCAAGGTTTGTGTCTTC
* *
228537 GATCTACTTTGCTGTCAATGCCA-
66 GATCTGCTTCGCTGTCAATG-CAG
* * * ** * *
228560 GAAGGCCAGATCTTTTGTCTTCAACCCGCT-CATTACAACCGAGAGAGGTAAGGTTTGTGTCTTC
1 GAAGGCAAGATCTATTGTCTTCAACCAGCTCCACCACAACCGAGGGAGGCAAGGTTTGTGTCTTC
* *
228624 GATCTACTTTGCTGTCAATGCCA-
66 GATCTGCTTCGCTGTCAATG-CAG
* * * ** * *
228647 GAAGGCCAGATCTTTTGTCTTCAACCCGCT-CATTACAACCGAGAGAGGTAAGGTTTGTGTCTTC
1 GAAGGCAAGATCTATTGTCTTCAACCAGCTCCACCACAACCGAGGGAGGCAAGGTTTGTGTCTTC
* *
228711 GATCTACTTTGCTGTCAATGCCA-
66 GATCTGCTTCGCTGTCAATG-CAG
* * * ** * *
228734 GAAGGCCAGATCTTTTGTCTTCAACCCGCT-CATTACAACCGAGAGAGGTAAGGTTTGTGTCTTC
1 GAAGGCAAGATCTATTGTCTTCAACCAGCTCCACCACAACCGAGGGAGGCAAGGTTTGTGTCTTC
* *
228798 GATCTACTTTGCTGTCAATGCCA-
66 GATCTGCTTCGCTGTCAATG-CAG
* * * ** * *
228821 GAAGGCCAGATCTTTTGTCTTCAACCCGCT-CATTACAACCGAGAGAGGTAAGGTTTGTGTCTTC
1 GAAGGCAAGATCTATTGTCTTCAACCAGCTCCACCACAACCGAGGGAGGCAAGGTTTGTGTCTTC
* *
228885 GATCTACTTTGCTGTCAATGCCA-
66 GATCTGCTTCGCTGTCAATG-CAG
* * * ** * *
228908 GAAGGCCAGATCTTTTGTCTTCAACCCGCT-CATTACAACCGAGAGAGGTAAGGTTTGTGTCTTC
1 GAAGGCAAGATCTATTGTCTTCAACCAGCTCCACCACAACCGAGGGAGGCAAGGTTTGTGTCTTC
* *
228972 GATCTACTTTGCTGTCAATGCCA-
66 GATCTGCTTCGCTGTCAATG-CAG
* * * ** *
228995 GAAGGCCAGATCTTTTGTCTTCAACCCGCT-CATTACAACCGAGAGAGGCAAGGTTTGTGTCTTC
1 GAAGGCAAGATCTATTGTCTTCAACCAGCTCCACCACAACCGAGGGAGGCAAGGTTTGTGTCTTC
* * *
229059 GATCTGATTCGCTGTCCATACAG
66 GATCTGCTTCGCTGTCAATGCAG
* * * * * * * *
229082 GATGGCATGATATTTTATCTTCAACCAGCTCCATCACAACCGAGGGAGGCAGGGTTGGTGTCTTC
1 GAAGGCAAGATCTATTGTCTTCAACCAGCTCCACCACAACCGAGGGAGGCAAGGTTTGTGTCTTC
* * *
229147 GATTTGATTCGCTGTCAATGTTA-
66 GATCTGCTTCGCTGTCAATG-CAG
** * * * *
229170 GCCGGCAAGGTCTTTTGTCTTCAACCAGCTCCATCACAACCGAGGGAGGAAAGGTTTGTGTCTTC
1 GAAGGCAAGATCTATTGTCTTCAACCAGCTCCACCACAACCGAGGGAGGCAAGGTTTGTGTCTTC
* *
229235 GATCTACTTTGCTGTCAATGCCA-
66 GATCTGCTTCGCTGTCAATG-CAG
* * *
229258 GAAGGCAAGATCTTTTGTCTTCAACCAGCTCTATCACAACCGAGGGAGGCAAGGTTTGTGTCTT
1 GAAGGCAAGATCTATTGTCTTCAACCAGCTCCACCACAACCGAGGGAGGCAAGGTTTGTGTCTT
229322 NNNNNNNNNN
Statistics
Matches: 4949, Mismatches: 116, Indels: 15
0.97 0.02 0.00
Matches are distributed among these distances:
86 2 0.00
87 601 0.12
88 4341 0.88
89 5 0.00
ACGTcount: A:0.24, C:0.26, G:0.25, T:0.26
Consensus pattern (88 bp):
GAAGGCAAGATCTATTGTCTTCAACCAGCTCCACCACAACCGAGGGAGGCAAGGTTTGTGTCTTC
GATCTGCTTCGCTGTCAATGCAG
Found at i:229310 original size:44 final size:44
Alignment explanation
Indices: 229173--229321 Score: 121
Period size: 44 Copynumber: 3.4 Consensus size: 44
229163 AATGTTAGCC
*
229173 GGCAAGGTCTTTTGTCTTCAACCAGCTCCATCACAACCGAGGGA
1 GGCAAGGTCTTTTGTCTTCAACCAGCTCTATCACAACCGAGGGA
* * * * * * *
229217 GGAAAGGT-TTGTGTCTTCGATCTA-CTTTGCTGTCA-ATGCC-A-GAA
1 GGCAAGGTCTTTTGTCTTC-AACCAGC--T-CTATCACA-ACCGAGGGA
*
229261 GGCAAGATCTTTTGTCTTCAACCAGCTCTATCACAACCGAGGGA
1 GGCAAGGTCTTTTGTCTTCAACCAGCTCTATCACAACCGAGGGA
*
229305 GGCAAGGT-TTGTGTCTT
1 GGCAAGGTCTTTTGTCTT
229322 NNNNNNNNNN
Statistics
Matches: 77, Mismatches: 18, Indels: 21
0.66 0.16 0.18
Matches are distributed among these distances:
42 7 0.09
43 21 0.27
44 30 0.39
45 13 0.17
46 6 0.08
ACGTcount: A:0.23, C:0.23, G:0.24, T:0.29
Consensus pattern (44 bp):
GGCAAGGTCTTTTGTCTTCAACCAGCTCTATCACAACCGAGGGA
Found at i:229766 original size:88 final size:88
Alignment explanation
Indices: 229616--229949 Score: 508
Period size: 88 Copynumber: 3.8 Consensus size: 88
229606 NNNNNNNNNN
* * *
229616 TTGTCTTCAATCAGCTCCATCACAACCGAGGGAGGCAAGGTTTGTGTCTTTGACCTGCTTCGCTG
1 TTGTCTTCAACCAGCTCCATCACAACCGAGGGAGGCAAGGTTTGTGTCTTCGACCTGATTCGCTG
* *
229681 TCAATGCAGGAAGGAAAGATCTG
66 TCAATGCAGGAAGGCAAGATCTT
* *
229704 TTGTCTTCAACCAGCTCCATCAGAACCGAGGGAGGCAAGGTTTGTGTCTTCGATCTGATTCGCTG
1 TTGTCTTCAACCAGCTCCATCACAACCGAGGGAGGCAAGGTTTGTGTCTTCGACCTGATTCGCTG
229769 TCAATGCAGGAAGGCAAGATCTT
66 TCAATGCAGGAAGGCAAGATCTT
* * * **
229792 TTGTCTTCAACCAGCTCCATCACAACCGAGGGAAGCAGGGTTGGTGTCTTCGATTTGATTCGCTG
1 TTGTCTTCAACCAGCTCCATCACAACCGAGGGAGGCAAGGTTTGTGTCTTCGACCTGATTCGCTG
* * *
229857 TCAATGTTA-GACGGCAAGGTCTT
66 TCAATG-CAGGAAGGCAAGATCTT
*
229880 TTGTCTTCAACCAGCTCCATCACAACCGAGGGAGGCAAGGTTTGTGTCTTCGACCTGCTTCGCTG
1 TTGTCTTCAACCAGCTCCATCACAACCGAGGGAGGCAAGGTTTGTGTCTTCGACCTGATTCGCTG
229945 TCAAT
66 TCAAT
229950 NNNNNNNNNN
Statistics
Matches: 224, Mismatches: 21, Indels: 2
0.91 0.09 0.01
Matches are distributed among these distances:
88 223 1.00
89 1 0.00
ACGTcount: A:0.22, C:0.24, G:0.25, T:0.28
Consensus pattern (88 bp):
TTGTCTTCAACCAGCTCCATCACAACCGAGGGAGGCAAGGTTTGTGTCTTCGACCTGATTCGCTG
TCAATGCAGGAAGGCAAGATCTT
Found at i:229786 original size:44 final size:43
Alignment explanation
Indices: 229648--229786 Score: 111
Period size: 44 Copynumber: 3.2 Consensus size: 43
229638 CAACCGAGGG
*
229648 AGGCAAGGTTTGTGTCTTTGACCTGCTTCGCTGTCAATGCAGGA
1 AGGCAAGGTTTGTGTCTTCGACCTG-TTCGCTGTCAATGCAGGA
* * * * * * * ** *
229692 AGGAAAGATCTGTTGTCTTCAACCAGCTC-C-ATCAGAACCGAGGG
1 AGGCAAGGTTTG-TGTCTTCGACCTGTTCGCTGTCA-ATGC-AGGA
*
229736 AGGCAAGGTTTGTGTCTTCGATCTGATTCGCTGTCAATGCAGGA
1 AGGCAAGGTTTGTGTCTTCGACCTG-TTCGCTGTCAATGCAGGA
229780 AGGCAAG
1 AGGCAAG
229787 ATCTTTTGTC
Statistics
Matches: 67, Mismatches: 22, Indels: 12
0.66 0.22 0.12
Matches are distributed among these distances:
42 3 0.04
43 13 0.19
44 35 0.52
45 13 0.19
46 3 0.04
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.27
Consensus pattern (43 bp):
AGGCAAGGTTTGTGTCTTCGACCTGTTCGCTGTCAATGCAGGA
Found at i:230345 original size:88 final size:88
Alignment explanation
Indices: 230187--230525 Score: 480
Period size: 88 Copynumber: 3.9 Consensus size: 88
230177 NNNNNNNNNN
* * *
230187 GCTGTCAATGCAGGAAGGCAAGATCTTTTGTCTTCAACCAGCTCCATCACAACCGAGAGAGGAAA
1 GCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGGGAGGCAA
*
230252 TGTTTGTGTCTTTGACCTGCTTC
66 GGTTTGTGTCTTTGACCTGCTTC
* * * *
230275 GTTGTCAATGCAGGAAGGCAGGATCTGTTGTCTTCAACTAGCTCCATCACAACTGAGGGAGGCAA
1 GCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGGGAGGCAA
* ** **
230340 GGTTTGTGTCTTCGATTTAATTC
66 GGTTTGTGTCTTTGACCTGCTTC
* * * *
230363 CCTGTCAATGCAGGAAGGCAAGATCTTTTGTCTTCAATCAGCTGCATCACAACCGAGGGAGGCAA
1 GCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGGGAGGCAA
*
230428 GGTTTGTATCTTTGACCTGCTTC
66 GGTTTGTGTCTTTGACCTGCTTC
* * * *
230451 GCTGTCAATACAGGAAGGAAAGATCTGTTGTCTCCAACCAGCTCCATCAGAACCGAGGGAGGCAA
1 GCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGGGAGGCAA
230516 GGTTTGTGTC
66 GGTTTGTGTC
Statistics
Matches: 215, Mismatches: 36, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
88 215 1.00
ACGTcount: A:0.25, C:0.22, G:0.25, T:0.27
Consensus pattern (88 bp):
GCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGGGAGGCAA
GGTTTGTGTCTTTGACCTGCTTC
Found at i:230397 original size:45 final size:44
Alignment explanation
Indices: 230277--230399 Score: 106
Period size: 44 Copynumber: 2.8 Consensus size: 44
230267 CCTGCTTCGT
* * *
230277 TGTCAATGCAGGAAGGCAGGATCTGTTGTCTTCAACTAGCTCCA
1 TGTCAATGCAGGAAGGCAAGATCTTTTGTCTTCAACTAACTCCA
** * * * ** * *
230321 TCACAACTG-AGGGAGGCAAGGT-TTGTGTCTTCGATTTAATTCCC
1 TGTCAA-TGCAGGAAGGCAAGATCTTTTGTCTTC-AACTAACTCCA
230365 TGTCAATGCAGGAAGGCAAGATCTTTTGTCTTCAA
1 TGTCAATGCAGGAAGGCAAGATCTTTTGTCTTCAA
230400 TCAGCTGCAT
Statistics
Matches: 57, Mismatches: 18, Indels: 8
0.69 0.22 0.10
Matches are distributed among these distances:
43 10 0.18
44 36 0.63
45 11 0.19
ACGTcount: A:0.25, C:0.20, G:0.24, T:0.30
Consensus pattern (44 bp):
TGTCAATGCAGGAAGGCAAGATCTTTTGTCTTCAACTAACTCCA
Found at i:230482 original size:176 final size:176
Alignment explanation
Indices: 230188--230525 Score: 550
Period size: 176 Copynumber: 1.9 Consensus size: 176
230178 NNNNNNNNNG
*
230188 CTGTCAATGCAGGAAGGCAAGATCTTTTGTCTTCAACCAGCTCCATCACAACCGAGAGAGGAAAT
1 CTGTCAATGCAGGAAGGCAAGATCTTTTGTCTTCAACCAGCTCCATCACAACCGAGAGAGGAAAG
* * * * * * *
230253 GTTTGTGTCTTTGACCTGCTTCGTTGTCAATGCAGGAAGGCAGGATCTGTTGTCTTCAACTAGCT
66 GTTTGTATCTTTGACCTGCTTCGCTGTCAATACAGGAAGGAAAGATCTGTTGTCTCCAACCAGCT
*
230318 CCATCACAACTGAGGGAGGCAAGGTTTGTGTCTTCGATTTAATTCC
131 CCATCACAACCGAGGGAGGCAAGGTTTGTGTCTTCGATTTAATTCC
* * * *
230364 CTGTCAATGCAGGAAGGCAAGATCTTTTGTCTTCAATCAGCTGCATCACAACCGAGGGAGGCAAG
1 CTGTCAATGCAGGAAGGCAAGATCTTTTGTCTTCAACCAGCTCCATCACAACCGAGAGAGGAAAG
230429 GTTTGTATCTTTGACCTGCTTCGCTGTCAATACAGGAAGGAAAGATCTGTTGTCTCCAACCAGCT
66 GTTTGTATCTTTGACCTGCTTCGCTGTCAATACAGGAAGGAAAGATCTGTTGTCTCCAACCAGCT
*
230494 CCATCAGAACCGAGGGAGGCAAGGTTTGTGTC
131 CCATCACAACCGAGGGAGGCAAGGTTTGTGTC
Statistics
Matches: 148, Mismatches: 14, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
176 148 1.00
ACGTcount: A:0.25, C:0.22, G:0.25, T:0.28
Consensus pattern (176 bp):
CTGTCAATGCAGGAAGGCAAGATCTTTTGTCTTCAACCAGCTCCATCACAACCGAGAGAGGAAAG
GTTTGTATCTTTGACCTGCTTCGCTGTCAATACAGGAAGGAAAGATCTGTTGTCTCCAACCAGCT
CCATCACAACCGAGGGAGGCAAGGTTTGTGTCTTCGATTTAATTCC
Done.