Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold813

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5945
ACGTcount: A:0.21, C:0.15, G:0.17, T:0.25

Warning! 1342 characters in sequence are not A, C, G, or T


Found at i:2892 original size:13 final size:13

Alignment explanation


    Indices: 2874--2898  Score: 50
    Period size: 13  Copynumber: 1.9  Consensus size: 13

       2864 GGGGGTGAGG

                         
       2874 TGATTGAAGTCGA
          1 TGATTGAAGTCGA

                        
       2887 TGATTGAAGTCG
          1 TGATTGAAGTCG

       2899 GTGAGATATG


Statistics
Matches: 12,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   12  1.00

ACGTcount: A:0.28, C:0.08, G:0.32, T:0.32


Consensus pattern (13 bp):   
TGATTGAAGTCGA
Done.