Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold1697

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 834

Length: 1390
ACGTcount: A:0.33, C:0.17, G:0.19, T:0.31


Found at i:750 original size:20 final size:20

Alignment explanation


    Indices: 725--765  Score: 64
    Period size: 20  Copynumber: 2.0  Consensus size: 20

        715 ACAAAAAATC

                      *    *    
        725 ATTTTTCATTGGAAATGACT
          1 ATTTTTCATTAGAAACGACT

                                
        745 ATTTTTCATTAGAAACGACT
          1 ATTTTTCATTAGAAACGACT

             
        765 A
          1 A

        766 ACCTCAGCCC


Statistics
Matches: 19,  Mismatches: 2, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  20   19  1.00

ACGTcount: A:0.34, C:0.12, G:0.12, T:0.41


Consensus pattern (20 bp):   
ATTTTTCATTAGAAACGACT
Done.