Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold1144

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2589
ACGTcount: A:0.27, C:0.16, G:0.20, T:0.37


Found at i:884 original size:31 final size:30

Alignment explanation


    Indices: 795--891  Score: 95
    Period size: 31  Copynumber: 3.2  Consensus size: 30

        785 ATTCCAGACA

                     * *  *                
        795 GGGATATCCCATTCCAGGAATATCCCGGCTT
          1 GGGATATCCTACTCTAGG-ATATCCCGGCTT

             *                **          
        826 GAGATATCCTACTCTAGGGCATCCCGGCTT
          1 GGGATATCCTACTCTAGGATATCCCGGCTT

                    *  * *                 
        856 GGGATATCTTATTGTAGGTATATCCCGGCTT
          1 GGGATATCCTACTCTAGG-ATATCCCGGCTT

                 
        887 GGGAT
          1 GGGAT

        892 CTAGGGTTTG


Statistics
Matches: 53,  Mismatches: 12, Indels: 2
        0.79            0.18        0.03

Matches are distributed among these distances:
  30   24  0.45
  31   29  0.55

ACGTcount: A:0.21, C:0.24, G:0.26, T:0.30


Consensus pattern (30 bp):   
GGGATATCCTACTCTAGGATATCCCGGCTT
Done.